Results for 'Justin Preece'

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  1. The Plant Ontology as a tool for comparative plant anatomy and genomic analyses.Cooper Laurel, Walls Ramona, L. Elser, Justin Gandolfo, A. Maria, Stevenson Dennis, W. Smith, Barry Preece, Justin Athreya, Balaji Mungall, J. Christopher, Rensing Stefan & Others - 2012 - Plant and Cell Physiology.
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  2. Ontologies as Integrative Tools for Plant Science.Ramona Walls, Balaji Athreya, Laurel Cooper, Justin Elser, Maria A. Gandolfo, Pankaj Jaiswal, Christopher J. Mungall, Justin Preece, Stefan Rensing, Barry Smith & Dennis W. Stevenson - 2012 - American Journal of Botany 99 (8):1263–1275.
    Bio-ontologies are essential tools for accessing and analyzing the rapidly growing pool of plant genomic and phenomic data. Ontologies provide structured vocabularies to support consistent aggregation of data and a semantic framework for automated analyses and reasoning. They are a key component of the Semantic Web. This paper provides background on what bio-ontologies are, why they are relevant to botany, and the principles of ontology development. It includes an overview of ontologies and related resources that are relevant to plant science, (...)
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  3. The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.Laurel Cooper, Austin Meier, Marie-Angélique Laporte, Justin L. Elser, Chris Mungall, Brandon T. Sinn, Dario Cavaliere, Seth Carbon, Nathan A. Dunn, Barry Smith, Botong Qu, Justin Preece, Eugene Zhang, Sinisa Todorovic, Georgios Gkoutos, John H. Doonan, Dennis W. Stevenson, Elizabeth Arnaud & Pankaj Jaiswal - 2018 - Nucleic Acids Research 46 (D1):D1168–D1180.
    The Planteome project provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics data. The reference ontologies include the Plant Ontology, Plant Trait Ontology, and the Plant Experimental Conditions Ontology developed by the Planteome project, along with the Gene Ontology, Chemical Entities of Biological Interest, Phenotype and Attribute Ontology, and others. The project also provides (...)
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    Awe for the tiger, love for the lamb: a chronicle of sensibility to animals.Rod Preece (ed.) - 2002 - Vancouver: UBC Press.
    From the myths of the ancient world to the Middle Ages to Darwin and beyond, Preece captures the most telling and fascinating accounts of humankind's ...
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  5.  28
    Darwinism, Christianity, and the Great Vivisection Debate.Rod Preece - 2003 - Journal of the History of Ideas 64 (3):399-419.
    The reputation of the Christian tradition has fared poorly in the literature on the history of attitudes to nonhuman animals. This is more a consequence of secularist prejudice than objective scholarship. The idea of "dominion" and the understanding of animal souls are almost universally misrepresented. There has been no firmer conclusion than that Charles Darwin's theory of evolution had a profoundly beneficial impact on the recognition of our similarities to, kinship with, and consequent moral obligations to, other species. In reality, (...)
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  6. The Disagreement Challenge to Contextualism.Justin Khoo - 2017 - In Jonathan Jenkins Ichikawa (ed.), The Routledge Handbook of Epistemic Contextualism. New York: Routledge.
    I articulate the challenge disagreement poses for epistemic contextualism, and then discuss several possible replies on behalf of the contextualist.
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  7.  12
    Epistemicism without metalinguistic safety.Justin Khoo - 2023 - In Abrol Fairweather & Carlos Montemayor (eds.), Linguistic Luck: Safeguards and Threats to Linguistic Communication. Oxford, GB: Oxford University Press.
    Epistemicists claim that vague predicates have precise but unknow- able cutoffs. I argue against against the standard, Williamsonian, answer, that appeals to metalinguistic safety: we can know that p even if our true belief that p is metalinguistically lucky. I then propose that epistemicists should be diagonalized epistemicists and show how this alternative formulation of the view avoids the chal- lenge. However, in an M. Night Shyamalan-style twist, I then argue we should not be diagonalized epistemicists either.
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  8.  20
    Indian Inscriptions on the Fire Temple at BākuIndian Inscriptions on the Fire Temple at Baku.Justin E. Abbott - 1908 - Journal of the American Oriental Society 29:299.
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    Oscillator-based memory for serial order.Gordon D. A. Brown, Tim Preece & Charles Hulme - 2000 - Psychological Review 107 (1):127-181.
  10. Should CSR Give Atheists Epistemic Assurance? On Beer-Goggles, BFFs, and Skepticism Regarding Religious Beliefs.Justin L. Barrett & Ian M. Church - 2013 - The Monist 96 (3):311-324.
    Recent work in cognitive science of religion (CSR) is beginning to converge on a very interesting thesis—that, given the ordinary features of human minds operating in typical human environments, we are naturally disposed to believe in the existence of gods, among other religious ideas (e.g., seeAtran [2002], Barrett [2004; 2012], Bering [2011], Boyer [2001], Guthrie [1993], McCauley [2011], Pyysiäinen [2004; 2009]). In this paper, we explore whether such a discovery ultimately helps or hurts the atheist position—whether, for example, it lends (...)
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  11. Epistemic Corruption and Manufactured Doubt: The Case of Climate Science.Justin B. Biddle, Anna Leuschner & Ian James Kidd - 2017 - Public Affairs Quarterly 31 (3):165-187.
    Criticism plays an essential role in the growth of scientific knowledge. In some cases, however, criticism can have detrimental effects; for example, it can be used to ‘manufacture doubt’ for the purpose of impeding public policy making on issues such as tobacco consumption and greenhouse gas emissions (e.g., Oreskes & Conway 2010). In this paper, we build on previous work by Biddle and Leuschner (2015) who argue that criticism that meets certain conditions can be epistemically detrimental. We extend and refine (...)
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  12. Value judgements and the estimation of uncertainty in climate modeling.Justin Biddle & Eric Winsberg - 2009 - In P. D. Magnus & Jacob Busch (eds.), New Waves in Philosophy of Science. Palgrave-Macmillan. pp. 172--197.
  13. Reformed Epistemology and the Cognitive Science of Religion.Justin L. Barrett - 2010 - Faith and Philosophy 27 (2):174-189.
    Reformed epistemology and cognitive science have remarkably converged on belief in God. Reformed epistemology holds that belief in God is basic—that is, belief in God is a natural, non-inferential belief that is immediately produced by a cognitive faculty. Cognitive science of religion also holds that belief in gods is (often) non-reflectively and instinctively produced—that is, non-inferentially and automatically produced by a cognitive faculty or system. But there are differences. In this paper, we will show some remarkable points of convergence, and (...)
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  14. All in the Family: The History and Philosophy of Experimental Philosophy.Justin Sytsma, Joseph Ulatowski & Chad Gonnerman - 2023 - In Alexander Max Bauer & Stephan Kornmesser (eds.), The Compact Compendium of Experimental Philosophy. Berlin and Boston: De Gruyter.
    Experimental philosophy (or “x-phi”) is a way of doing philosophy. It is “traditional” philosophy, but with a little something extra: In addition to the expected philosophical arguments and engagement, x-phi involves the use of empirical methods to test the empirical claims that arise. This extra bit strikes some as a new, perhaps radical, addition to philosophical practice. We don’t think so. As this chapter will show, empirical claims have been common across the history of Western philosophy, as have appeals to (...)
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  15.  56
    Advances in Experimental Philosophy of Mind.Justin Sytsma (ed.) - 2014 - New York: Bloomsbury.
    Leading researchers in the philosophy of mind present and explore cutting edge research in the exciting new field of experimental philosophy.
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  16.  37
    Two Origin Stories for Experimental Philosophy.Justin Sytsma - unknown
    Both advocates and critics of experimental philosophy often describe it in narrow terms as being the empirical study of people’s intuitions about philosophical cases. This conception corresponds with a narrow origin story for the field—it grew out of a dissatisfaction with the uncritical use of philosophers’ own intuitions as evidence for philosophical claims. In contrast, a growing number of experimental philosophers have explicitly embraced a broad conception of the sub-discipline, which treats it as simply the use of empirical methods to (...)
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  17. On Predicting Recidivism: Epistemic Risk, Tradeoffs, and Values in Machine Learning.Justin B. Biddle - 2022 - Canadian Journal of Philosophy 52 (3):321-341.
    Recent scholarship in philosophy of science and technology has shown that scientific and technological decision making are laden with values, including values of a social, political, and/or ethical character. This paper examines the role of value judgments in the design of machine-learning systems generally and in recidivism-prediction algorithms specifically. Drawing on work on inductive and epistemic risk, the paper argues that ML systems are value laden in ways similar to human decision making, because the development and design of ML systems (...)
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  18. The essence of grounding.Justin Zylstra - 2019 - Synthese 196 (12):5137-5152.
    I develop a reduction of grounding to essence. My approach is to think about the relation between grounding and essence on the model of a certain conceptof existential dependence. I extend this concept of existential dependence in a coupleof ways and argue that these extensions provide a reduction of grounding to essenceif we use sorted variables that range over facts and take it that for a fact to obtain is forit to exist. I then use the account to resolve various (...)
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  19. Collective Essence and Monotonicity.Justin Zylstra - 2019 - Erkenntnis 84 (5):1087-1101.
    This paper focuses on the concept of collective essence: that some truths are essential to many items taken together. For example, that it is essential to conjunction and negation that they are truth-functionally complete. The concept of collective essence is one of the main innovations of recent work on the theory of essence. In a sense, this innovation is natural, since we make all sorts of plural predications. It stands to reason that there should be a distinction between essential and (...)
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  20.  36
    An Expected Error: An Essay in Defence of Moral Emotionism.Justin J. Bartlett - 2022 - Axiomathes 32 (2):271-289.
    This work draws an analogical defence of strong emotionism—the metaethical claim that moral properties and concepts consist in the propensity of actions to elicit emotional responses from divergent emotional perspectives. I offer a theory that is in line with that of Prinz. I build an analogy between moral properties and what I call emotion-dispositional properties. These properties are picked out by predicates such as ‘annoying’, ‘frightening’ or ‘deplorable’ and appear to be uncontroversial and frequent cases of attribution error—the attributing of (...)
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  21. Climate skepticism and the manufacture of doubt: can dissent in science be epistemically detrimental?Justin B. Biddle & Anna Leuschner - 2015 - European Journal for Philosophy of Science 5 (3):261-278.
    The aim of this paper is to address the neglected but important problem of differentiating between epistemically beneficial and epistemically detrimental dissent. By “dissent,” we refer to the act of objecting to a particular conclusion, especially one that is widely held. While dissent in science can clearly be beneficial, there might be some instances of dissent that not only fail to contribute to scientific progress, but actually impede it. Potential examples of this include the tobacco industry’s funding of studies that (...)
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  22. State of the field: Transient underdetermination and values in science.Justin Biddle - 2013 - Studies in History and Philosophy of Science Part A 44 (1):124-133.
    This paper examines the state of the field of “science and values”—particularly regarding the implications of the thesis of transient underdetermination for the ideal of value-free science, or what I call the “ideal of epistemic purity.” I do this by discussing some of the main arguments in the literature, both for and against the ideal. I examine a preliminary argument from transient underdetermination against the ideal of epistemic purity, and I discuss two different formulations of an objection to this argument—an (...)
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  23. The autonomy of colour.Justin Broackes - 1992 - In K. Lennon & D. Charles (eds.), Reduction, Explanation, and Realism. Oxford University Press. pp. 191-225.
    This essay* takes two notions of autonomy and two notions of explanation and argues that colours occur in explanations that fall under all of them. The claim that colours can be used to explain anything at all may seem to some people an outrage. But their pessimism is unjustified and the orthodox dispositional view which may seem to support it, I shall argue, itself has difficulties. In broad terms, Section 2 shows that there exist good straight scientific laws of colour, (...)
     
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  24.  52
    Why Santa Claus is Not a God.Justin Barrett - 2008 - Journal of Cognition and Culture 8 (1-2):149-161.
    Through the lenses of cognitive science of religion, successful god concepts must possess a number of features. God concepts must be counterintuitive, an intentional agent, possessing strategic information, able to act in the human world in detectable ways and capable of motivating behaviors that reinforce belief. That Santa Claus appears to be only inconsistently represented as having all five requisite features Santa has failed to develop a community of true believers and cult. Nevertheless, Santa concepts approximate a successful god concept (...)
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  25. Modal Objectivity.Clarke-Doane Justin - 2019 - Noûs 53:266-295.
    It is widely agreed that the intelligibility of modal metaphysics has been vindicated. Quine's arguments to the contrary supposedly confused analyticity with metaphysical necessity, and rigid with non-rigid designators.2 But even if modal metaphysics is intelligible, it could be misconceived. It could be that metaphysical necessity is not absolute necessity – the strictest real notion of necessity – and that no proposition of traditional metaphysical interest is necessary in every real sense. If there were nothing otherwise “uniquely metaphysically significant” about (...)
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  26. Essence, necessity, and definition.Justin Zylstra - 2019 - Philosophical Studies 176 (2):339-350.
    What is it for something to be essential to an item? For some time, it was standard to think that the concept of necessity alone can provide an answer: for something to be essential to an item is for it to be strictly implied by the existence of that item. We now tend to think that this view fails because its analysans is insufficient for its analysandum. In response, some argue that we can supplement the analysis in terms of necessity (...)
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  27. Well-Being and Daoism.Justin Tiwald - 2015 - In Guy Fletcher (ed.), The Routledge Handbook of Philosophy of Well-Being. Routledge. pp. 56-69.
    In this chapter, I explicate several general views and arguments that bear on the notion and contemporary theories of human welfare, as found in two foundational Daoist texts, the Daodejing and the Zhuangzi. Ideas drawn from the Daodejing include its objections to desire theories of human welfare and its distinction between natural and acquired desires. Insights drawn from the Zhuangzi include its arguments against the view that death is bad for the dead, its attempt to develop a workable theory of (...)
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  28. What Biological Functions Are and Why They Matter.Justin Garson - 2019 - New York: Cambridge University Press.
    The biological functions debate is a perennial topic in the philosophy of science. In the first full-length account of the nature and importance of biological functions for many years, Justin Garson presents an innovative new theory, the 'generalized selected effects theory of function', which seamlessly integrates evolutionary and developmental perspectives on biological functions. He develops the implications of the theory for contemporary debates in the philosophy of mind, the philosophy of medicine and psychiatry, the philosophy of biology, and biology (...)
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  29. Making semantics for essence.Justin Zylstra - 2019 - Inquiry: An Interdisciplinary Journal of Philosophy 62 (8):859-876.
    ABSTRACTIn this paper, I develop a truthmaker semantics for essence and use the semantics to investigate the explanatory role of essence.
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  30. Early Christian philosophers: Justin, Irenaeus, Clement of alexandria, tertullian Eric osborn1.Irenaeus Justin - 2009 - In Graham Oppy & Nick Trakakis (eds.), Medieval Philosophy of Religion: The History of Western Philosophy of Religion, Volume 2. Routledge. pp. 3--187.
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  31.  93
    A Critical Overview of Biological Functions.Justin Garson - 2016 - Dordrecht: Springer.
    This book is a critical survey of and guidebook to the literature on biological functions. It ties in with current debates and developments, and at the same time, it looks back on the state of discourse in naturalized teleology prior to the 1970s. It also presents three significant new proposals. First, it describes the generalized selected effects theory, which is one version of the selected effects theory, maintaining that the function of a trait consists in the activity that led to (...)
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  32. Is the problem of evil a deontological problem?Justin Mooney - 2017 - Analysis 77 (1):79-87.
    Recently, some authors have argued that experiences of poignant evils provide non-inferential support for crucial premisses in arguments from evil. Careful scrutiny of these experiences suggests that the impermissibility of permitting a horrendous evil might be characterized by a deontological insensitivity to consequences. This has significant implications for the project of theodicy.
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  33.  78
    The Robots of the Dawn of Experimental Philosophy of Mind.Justin Sytsma - unknown
    In this chapter, I consider two hypotheses that have informed recent work in experimental philosophy of mind. The first is a positive hypothesis put forward by Fiala, Arico, and Nichols : Categorization of an entity as an agent through fast, automatic, and domain-specific processing produces a disposition to ascribe a wide range of mental states to that entity. The second is a negative hypothesis put forward by Sytsma and Machery: The existence of phenomenally conscious mental states is not obvious from (...)
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  34.  32
    Counterintuitiveness in Folktales: Finding the Cognitive Optimum.Justin Barrett, Emily Reed Burdett & Tenelle Porter - 2009 - Journal of Cognition and Culture 9 (3-4):271-287.
    The present study sought to determine whether Barrett's counterintuitiveness coding and quantifying scheme could be applied to cultural materials with sufficient intercoder reliability, provide evidence concerning just how counterintuitive is too counterintuitive for a concept to be a recurrent cultural idea, and test whether counterintuitive intentional agent concepts are more common in folktales than other classes of counterintuitive concepts. Seventy-three folktales from around the world were sampled from larger collections. Using Barrett's CI-Scheme, two independent coders identified 116 counterintuitive objects and (...)
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  35. Explaining Loss of Standing to Blame.Justin Snedegar - forthcoming - Journal of Moral Philosophy:1-29.
    Both in everyday life and in moral philosophy, many think that our own past wrongdoing can undermine our standing to indignantly blame others for similar wrongdoing. In recent literature on the ethics of blame, we find two different kinds of explanation for this. Relative moral status accounts hold that to have standing to blame, you must be better than the person you are blaming, in terms of compliance with the norm. Fault-based accounts hold that those who blame others for things (...)
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  36.  3
    Review of Conwy Lloyd Morgan: The Interpretation of Nature[REVIEW]C. T. Preece - 1906 - International Journal of Ethics 16 (4):517-518.
  37. Inductive Risk, Epistemic Risk, and Overdiagnosis of Disease.Justin B. Biddle - 2016 - Perspectives on Science 24 (2):192-205.
    . Recent philosophers of science have not only revived the classical argument from inductive risk but extended it. I argue that some of the purported extensions do not fit cleanly within the schema of the original argument, and I discuss the problem of overdiagnosis of disease due to expanded disease definitions in order to show that there are some risks in the research process that are important and that very clearly fall outside of the domain of inductive risk. Finally, I (...)
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  38.  41
    Minority (dis)advantage in population games.Justin P. Bruner - 2019 - Synthese 196 (1):413-427.
    We identify a novel ‘cultural red king effect’ that, in many cases, results in stable arrangements which are to the detriment of minority groups. In particular, we show inequalities disadvantaging minority groups can naturally arise under an adaptive process when minority and majority members must routinely determine how to divide resources amongst themselves. We contend that these results show how inequalities disadvantaging minorities can likely arise by dint of their relative size and need not be a result of either explicit (...)
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  39. Power, Bargaining, and Collaboration.Justin Bruner & Cailin O'Connor - 2017 - In Thomas Boyer-Kassem, Conor Mayo-Wilson & Michael Weisberg (eds.), Scientific Collaboration and Collective Knowledge. New York, USA: Oxford University Press.
    Collaboration is increasingly popular across academia. Collaborative work raises certain ethical questions, however. How will the fruits of collaboration be divided? How will the work for the collaborative project be split? In this paper, we consider the following question in particular. Are there ways in which these divisions systematically disadvantage certain groups? -/- We use evolutionary game theoretic models to address this question. First, we discuss results from O'Connor and Bruner (unpublished). In this paper, we show that underrepresented groups in (...)
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  40.  14
    The landing zone – Ground for model transfer in chemistry.Justin Price - 2019 - Studies in History and Philosophy of Science Part A 77:21-28.
  41. Moral Disagreement and Moral Semantics.Justin Khoo & Joshua Knobe - 2016 - Noûs:109-143.
    When speakers utter conflicting moral sentences, it seems clear that they disagree. It has often been suggested that the fact that the speakers disagree gives us evidence for a claim about the semantics of the sentences they are uttering. Specifically, it has been suggested that the existence of the disagreement gives us reason to infer that there must be an incompatibility between the contents of these sentences. This inference then plays a key role in a now-standard argument against certain theories (...)
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  42. When Obstinacy is a Better Policy.Justin Dallmann - 2017 - Philosophers' Imprint 17.
    For epistemic subjects like us, updating our credences incurs epistemic costs. Expending our limited processing power and working memory to properly update our credences by some information can come at the cost of not responding to other available information. It is thus desirable to flesh out and compare alternative ways of taking information into account in light of cognitive shortcomings like our own. This paper is a preliminary attempt to do so. I argue that it is better, in a range (...)
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  43. Lessons from the vioxx debacle: What the privatization of science can teach us about social epistemology.Justin Biddle - 2007 - Social Epistemology 21 (1):21 – 39.
    Since the early 1980s, private, for-profit corporations have become increasingly involved in all aspects of scientific research, especially of biomedical research. In this essay, I argue that there are dangerous epistemic consequences of this trend, which should be more thoroughly examined by social epistemologists. In support of this claim, I discuss a recent episode of pharmaceutical research involving the painkiller Vioxx. I argue that the research on Vioxx was epistemically problematic and that the primary cause of these inadequacies was faulty (...)
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  44. Purgatory and the Dilemma of Sanctification.Justin D. Barnard - 2007 - Faith and Philosophy 24 (3):311-330.
    Christian Protestants typically affirm both the essential moral perfection of heaven and the sufficiency of saving faith. Yet these two commitments generatean apparently self-destructive dilemma—one I call the dilemma of sanctification. The prima facie puzzle can be resolved in at least three ways. In this paper, I articulate the dilemma of sanctification in some detail and offer an argument against a widely-held Protestant solution I call provisionism. This constitutes indirect support for the solution I find most promising, namely, a doctrine (...)
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  45. The W-Defense Defended.Justin A. Capes - 2024 - Ergo: An Open Access Journal of Philosophy 11.
    The W-defense is among the most prominent arguments for the principle of alternative possibilities (PAP). Here I offer some considerations in support of the W-defense and respond to what I see as the most forceful objections to it to date. My response to these objections invokes the well-known flicker of freedom response to Frankfurt cases. I argue that the W-defense and the flicker response are mutually reinforcing and together yield a compelling defense of PAP.
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    Wittgenstein and the theory of perception.Justin Good - 2006 - New York: Continuum.
    A philosphical exploration of perception explores Wittgenstein's work on visual meaning and his analysis of the concept of "seeing.".
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  47.  5
    Deconstruction machines: writing in the age of cyberwar.Justin Joque - 2018 - Minneapolis: University of Minnesota Press.
    Root kit -- Buffer overflow: the space and time of cyberwar -- Injection attack: writing and the information catastrophe -- Distributed denial of service: cybernetic sovereignty -- Spear phishing: nodal subjects -- Firmware vulnerabilities.
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  48. Zhu Xi on Self-Focused vs. Other-Focused Empathy.Justin Tiwald - 2020 - In Kai-Chiu Ng & Yong Huang (eds.), Dao Companion to Zhu Xi’s Philosophy. Springer. pp. 963-980.
    This chapter is about issues in ethics and moral psychology that have been little explored by contemporary philosophers, ones that concern the advantages and disadvantages of two different kinds of empathy. Roughly, first type is what is sometimes called “other-focused” empathy, in which one reconstructs the thoughts and feelings that someone else has or would have. The second type, “self-focused” empathy, is the sort of emotional attitude someone adopts when she imagines how she would think or feel were she in (...)
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    History and Philosophy of Experimental Philosophy: All in the Family.Justin Sytsma, Joseph Ulatowski & Chad Gonnerman - 2023 - In Alexander Max Bauer & Stephan Kornmesser (eds.), The Compact Compendium of Experimental Philosophy. Berlin and Boston: De Gruyter. pp. 9-38.
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    Realism and sociology: anti-foundationalism, ontology, and social research.Justin Cruickshank - 2003 - New York: Routledge.
    In recent years methodological debates in the social sciences have increasingly focused on issues relating to epistemology. Realism and Sociology makes an original contribution to the debate, charting a middle ground between postmodernism and positivism.
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