Results for 'Justin Preece'

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  1. Ontologies as Integrative Tools for Plant Science.Ramona Walls, Balaji Athreya, Laurel Cooper, Justin Elser, Maria A. Gandolfo, Pankaj Jaiswal, Christopher J. Mungall, Justin Preece, Stefan Rensing, Barry Smith & Dennis W. Stevenson - 2012 - American Journal of Botany 99 (8):1263–1275.
    Bio-ontologies are essential tools for accessing and analyzing the rapidly growing pool of plant genomic and phenomic data. Ontologies provide structured vocabularies to support consistent aggregation of data and a semantic framework for automated analyses and reasoning. They are a key component of the Semantic Web. This paper provides background on what bio-ontologies are, why they are relevant to botany, and the principles of ontology development. It includes an overview of ontologies and related resources that are relevant to plant science, (...)
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  2. The Plant Ontology as a tool for comparative plant anatomy and genomic analyses.Cooper Laurel, Walls Ramona, L. Elser, Justin Gandolfo, A. Maria, Stevenson Dennis, W. Smith, Barry Preece, Justin Athreya, Balaji Mungall, J. Christopher, Rensing Stefan & Others - 2012 - Plant and Cell Physiology.
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  3. The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.Laurel Cooper, Austin Meier, Marie-Angélique Laporte, Justin L. Elser, Chris Mungall, Brandon T. Sinn, Dario Cavaliere, Seth Carbon, Nathan A. Dunn, Barry Smith, Botong Qu, Justin Preece, Eugene Zhang, Sinisa Todorovic, Georgios Gkoutos, John H. Doonan, Dennis W. Stevenson, Elizabeth Arnaud & Pankaj Jaiswal - 2018 - Nucleic Acids Research 46 (D1):D1168–D1180.
    The Planteome project provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics data. The reference ontologies include the Plant Ontology, Plant Trait Ontology, and the Plant Experimental Conditions Ontology developed by the Planteome project, along with the Gene Ontology, Chemical Entities of Biological Interest, Phenotype and Attribute Ontology, and others. The project also provides (...)
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  4. Moral Grandstanding.Justin Tosi & Brandon Warmke - 2016 - Philosophy and Public Affairs 44 (3):197-217.
    Moral grandstanding is a pervasive feature of public discourse. Many of us can likely recognize that we have engaged in grandstanding at one time or another. While there is nothing new about the phenomenon of grandstanding, we think that it has not received the philosophical attention it deserves. In this essay, we provide an account of moral grandstanding as the use of public discourse for moral self-promotion. We then show that our account, with support from some standard theses of social (...)
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  5. A Critical Overview of Biological Functions.Justin Garson - 2016 - Dordrecht: Springer.
    This book is a critical survey of and guidebook to the literature on biological functions. It ties in with current debates and developments, and at the same time, it looks back on the state of discourse in naturalized teleology prior to the 1970s. It also presents three significant new proposals. First, it describes the generalized selected effects theory, which is one version of the selected effects theory, maintaining that the function of a trait consists in the activity that led to (...)
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  6. Frankfurt cases: the fine-grained response revisited.Justin A. Capes & Philip Swenson - 2017 - Philosophical Studies 174 (4):967-981.
    Frankfurt cases are supposed to provide us with counterexamples to the principle of alternative possibilities. Among the most well known responses to these cases is what John Fischer has dubbed the flicker of freedom strategy. Here we revisit a version of this strategy, which we refer to as the fine-grained response. Although a number of philosophers, including some who are otherwise unsympathetic to Frankfurt’s argument, have dismissed the fine grained response, we believe there is a good deal to be said (...)
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  7.  44
    The Meaning of "If".Justin Khoo - 2022 - New York, USA: Oxford University Press.
    Despite its small stature, "if" occupies a central place both in everyday language and the philosophical lexicon. In allowing us to talk about hypothetical situations, "if" raises a host of thorny philosophical puzzles about language and logic. Addressing them requires tools from linguistics, logic, probability theory, and metaphysics. Justin Khoo uses these tools to navigate a maze of interconnected issues about conditionals, some of which include: the nature of linguistic communication, the relationship between logical and natural languages, and the (...)
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  8.  84
    Grandstanding: The Use and Abuse of Moral Talk.Justin Tosi & Brandon Warmke - 2020 - New York: Oxford University Press. Edited by Brandon Warmke.
    We are all guilty of it. We call people terrible names in conversation or online. We vilify those with whom we disagree, and make bolder claims than we could defend. We want to be seen as taking the moral high ground not just to make a point, or move a debate forward, but to look a certain way--incensed, or compassionate, or committed to a cause. We exaggerate. In other words, we grandstand. Nowhere is this more evident than in public discourse (...)
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  9. Physicalism Requires Functionalism: A New Formulation and Defense of the Via Negativa.Justin Tiehen - 2016 - Philosophy and Phenomenological Research 93 (1):3-24.
    How should ‘the physical’ be defined for the purpose of formulating physicalism? In this paper I defend a version of the via negativa according to which a property is physical just in case it is neither fundamentally mental nor possibly realized by a fundamentally mental property. The guiding idea is that physicalism requires functionalism, and thus that being a type identity theorist requires being a realizer-functionalist. In §1 I motivate my approach partly by arguing against Jessica Wilson's no fundamental mentality (...)
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  10. Making Ecological Values Make Sense: Toward More Operationalizable Ecological Legislation.Justin Donhauser - 2016 - Ethics and the Environment 21 (2):1-25.
    Value claims about ecological entities, their functionality, and properties take center stage in so-called “ecological” ethical and aesthetic theories. For example, the claim that the biodiversity in an old-growth forest imbues it with “value in and for itself” is an explicit value claim about an ecological property. And the claim that one can study “the aesthetics of nature, including natural objects...such as ecosystems” presupposes that natural instances of a type of ecological entity exist and can be regarded as more or (...)
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  11. Theoretical ecology as etiological from the start.Justin Donhauser - 2016 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 60:67-76.
    The world’s leading environmental advisory institutions look to ecological theory and research as an objective guide for policy and resource management decision-making. In addition to various theoretical merits of doing so, it is therefore crucially important to clear up confusions about ecology’s conceptual foundations and to make plain the basic workings of inferential methods used in the science. Through discussion of key moments in the genesis of the theoretical branch of ecology, this essay elucidates a general heuristic role of teleological (...)
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  12.  74
    Xunzi Among the Chinese Neo-Confucians.Justin Tiwald - 2016 - In Eric L. Hutton (ed.), Dao Companion to the Philosophy of Xunzi. Dordrecht: Springer. pp. 435-473.
    This chapter explains how Xunzi's text and views helped shape the thought of the Neo-Confucian philosophers, noting and explicating some areas of influence long overlooked in modern scholarship. It begins with a general overview of Xunzi’s changing position in the tradition (“Xunzi’s Status in Neo-Confucian Thought”), in which I discuss Xunzi’s status in three general periods of Neo-Confucian era: the early period, in which Neo-Confucian views of Xunzi were varied and somewhat ambiguous, the “mature” period, in which a broad consensus (...)
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  13. The Blackwell Companion to The Problem of Evil.Justin P. McBrayer & Daniel Howard-Snyder (eds.) - 2014 - Wiley.
    This volume has a two-fold purpose: reference and research. As a work of reference, it is designed to provide accessible, objective, and accurate summaries of contemporary developments within the problem of evil. As a work of research, it is designed to advance the dialectic within the problem of evil by offering novel insights, criticisms and responses from top scholars in the field. As such, the volume will serve as a guide to both specialists within the philosophy of religion and nonspecialists (...)
  14. The Greeks on pleasure.Justin Cyril Bertrand Gosling & Christopher Charles Whiston Taylor - 1982 - New York: Oxford University Press. Edited by C. C. W. Taylor.
    Provides a critical and analytical history of ancient Greek theories on the nature of pleasure, and of its value and rolein human lfie, from the ealriest times down to the period of Epicurus and the early Stoics.
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  15. The Possibility of a Fair Play Account of Legitimacy.Justin Tosi - 2015 - Ratio 30 (1):88-99.
    The philosophical literature on state legitimacy has recently seen a significant conceptual revision. Several philosophers have argued that the state's right to rule is better characterized not as a claim right to obedience, but as a power right. There have been few attempts to show that traditional justifications for the claim right might also be used to justify a power right, and there have been no such attempts involving the principle of fair play, which is widely regarded as the most (...)
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  16. The Strength of Knowledge in Plato’s Protagoras.Justin Clark - 2012 - Ancient Philosophy 32 (2):237-255.
  17. Schizophrenia and the Dysfunctional Brain.Justin Garson - 2010 - Journal of Cognitive Science 11:215-246.
    Scientists, philosophers, and even the lay public commonly accept that schizophrenia stems from a biological or internal ‘dysfunction.’ However, this assessment is typically accompanied neither by well-defined criteria for determining that something is dysfunctional nor empirical evidence that schizophrenia satisfies those criteria. In the following, a concept of biological function is developed and applied to a neurobiological model of schizophrenia. It concludes that current evidence does not warrant the claim that schizophrenia stems from a biological dysfunction, and, in fact, that (...)
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  18. Naturalism, Causality, and Nietzsche’s Conception of Science.Justin Remhof - 2015 - Journal of Nietzsche Studies 46 (1):110-119.
    ABSTRACT There is a disagreement over how to understand Nietzsche's view of science. According to what I call the Negative View, Nietzsche thinks science should be reconceived or superseded by another discourse, such as art, because it is nihilistic. By contrast, what I call the Positive View holds that Nietzsche does not think science is nihilistic, so he denies that it should be reinterpreted or overcome. Interestingly, defenders of each position can appeal to Nietzsche's understanding of naturalism to support their (...)
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  19. Skeptical theism.Justin P. McBrayer - 2010 - Philosophy Compass 5 (7):611-623.
    Most a posteriori arguments against the existence of God take the following form: (1) If God exists, the world would not be like this (where 'this' picks out some feature of the world like the existence of evil, etc.) (2) But the world is like this . (3) Therefore, God does not exist. Skeptical theists are theists who are skeptical of our ability to make judgments of the sort expressed by premise (1). According to skeptical theism, if there were a (...)
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  20. A Right of Rebellion in the Mengzi?Justin Tiwald - 2008 - Dao: A Journal of Comparative Philosophy 7 (3):269-282.
    Mengzi believed that tyrannical rulers can be justifiably deposed, and many contemporary scholars see this as evidence that that Mengzi endorsed a right of popular rebellion. I argue that the text of the Mengzi reveals a more mixed view, and does so in two respects. First, it suggests that the people are sometimes permitted to participate in a rebellion but not permitted to decide for themselves when rebellion is warranted. Second, it gives appropriate moral weight not to the people’s judgments (...)
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  21. Invisible disagreement: an inverted qualia argument for realism.Justin Donhauser - 2017 - Philosophical Studies 174 (3):593-606.
    Scientific realists argue that a good track record of multi-agent, and multiple method, validation of empirical claims is itself evidence that those claims, at least partially and approximately, reflect ways nature actually is independent of the ways we conceptualize it. Constructivists contend that successes in validating empirical claims only suffice to establish that our ways of modelling the world, our “constructions,” are useful and adequate for beings like us. This essay presents a thought experiment in which beings like us intersubjectively (...)
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  22.  15
    (1 other version)Towards Modeling False Memory With Computational Knowledge Bases.Justin Li & Emma Kohanyi - 2016 - Topics in Cognitive Science 8 (4).
    One challenge to creating realistic cognitive models of memory is the inability to account for the vast common–sense knowledge of human participants. Large computational knowledge bases such as WordNet and DBpedia may offer a solution to this problem but may pose other challenges. This paper explores some of these difficulties through a semantic network spreading activation model of the Deese–Roediger–McDermott false memory task. In three experiments, we show that these knowledge bases only capture a subset of human associations, while irrelevant (...)
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  23. After the end of legal thought.Justin Desautels-Stein - 2017 - In Justin Desautels-Stein & Christopher Tomlins (eds.), Searching for Contemporary Legal Thought. Cambridge, United Kingdom: Cambridge University Press.
     
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  24.  71
    Realism and sociology: anti-foundationalism, ontology, and social research.Justin Cruickshank - 2003 - New York: Routledge.
    In recent years methodological debates in the social sciences have increasingly focused on issues relating to epistemology. Realism and Sociology makes an original contribution to the debate, charting a middle ground between postmodernism and positivism.
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  25. The Introduction of Information into Neurobiology.Justin Garson - 2003 - Philosophy of Science 70 (5):926-936.
    The first use of the term "information" to describe the content of nervous impulse occurs 20 years prior to Shannon`s (1948) work, in Edgar Adrian`s The Basis of Sensation (1928). Although, at least throughout the 1920s and early 30s, the term "information" does not appear in Adrian`s scientific writings to describe the content of nervous impulse, the notion that the structure of nervous impulse constitutes a type of message subject to certain constraints plays an important role in all of his (...)
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  26. The Hiddenness of Psychological Symptom Amplification: Some Historical Observations.Justin Garson - 2015 - In Daniel D. Moseley & Gary Gala (eds.), Philosophy and Psychiatry: Problems, Intersections and New Perspectives. Routledge. pp. 29-35.
    This book chapter is a short response to a paper by the psychiatrist Nicholas Kontos, on the phenomenon of psychological symptom amplification (PSA). PSA takes place when patients present symptoms to clinicians that they do not actually have, or, perhaps more commonly, they exaggerate symptoms they do have. Kontos argues that, because of modern medical training, it is very difficult for clinicians to recognize that the patient's presented symptoms are exaggerated or nonexistent. I argue that the hiddenness of PSA is (...)
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  27. Phenomenological obviousness and the new science of consciousness.Justin Sytsma - 2009 - Philosophy of Science 76 (5):958-969.
    Is phenomenal consciousness a problem for the brain sciences? An increasing number of researchers hold not only that it is but that its very existence is a deep mystery. That this problematic phenomenon exists is generally taken for granted: It is asserted that phenomenal consciousness is just phenomenologically obvious. In contrast, I hold that there is no such phenomenon and, thus, that it does not pose a problem for the brain sciences. For this denial to be plausible, however, I need (...)
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  28.  13
    An Invitation To Cognitive Science.Justin Leiber - 1991 - Cambridge: Blackwell.
    Professor Leiber's exuberant but incisive book illuminates the inquiry's beginnings in Plato, in the physiology and psychology of Descartes, in the formal work of Russell and Gödel, and in Wittgenstein's critique of folk psychology.
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  29. The Fate of Embodiment.David Justin Hodge - 2000 - Dissertation, Vanderbilt University
    The claim of this work is that philosophy is a kind of autobiographical practice. To investigate and defend this claim I look to three notable occasions in the life and work of Ralph Waldo Emerson in which the philosophical is, I argue, a translation of the autobiographical. ;There are three parts of this work, each of which aims to illuminate the autobiographical nature of philosophical tasks and problems. For special consideration, I investigate Emerson's experience of the death of others, the (...)
     
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  30.  79
    If Market Socialism is So Great, Why Doesn’t It Exist?Justin Schwartz - 1995 - Radical Philosophy Review of Books 11 (11):6-16.
  31. Does simulation theory really involve simulation?Justin C. Fisher - 2006 - Philosophical Psychology 19 (4):417 – 432.
    This paper contributes to an ongoing debate regarding the cognitive processes involved when one person predicts a target person's behavior and/or attributes a mental state to that target person. According to simulation theory, a person typically performs these tasks by employing some part of her brain as a simulation of what is going on in a corresponding part of the brain of the target person. I propose a general intuitive analysis of what 'simulation' means. Simulation is a particular way of (...)
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  32.  39
    The Image of Thought.Justin Beplate - 2005 - Symposium: Canadian Journal of Continental Philosophy/Revue canadienne de philosophie continentale 9 (1):11-30.
  33.  65
    Deadly Medicines and Organised Crime: How Big Pharma has Corrupted Healthcare by Peter Gøtzsche.Justin B. Biddle - 2016 - Kennedy Institute of Ethics Journal 26 (2):40-43.
    From the title, Deadly Medicines and Organised Crime: How Big Pharma has Corrupted Healthcare, Peter Gøtzsche makes the thesis of his book very clear. Not only does the pharmaceutical industry contribute to detrimental health outcomes through biased research, deceptive marketing, and disease mongering, but the industry’s business model meets the criteria of an organized criminal operation. Gøtzsche argues for this in two parts. First, he defines organized crime by drawing upon the United States Organized Crime Control Act of 1970, the (...)
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  34.  26
    Naming the Mind: How Psychology Found Its Language. Kurt Danziger.Justin Leiber - 1999 - Isis 90 (3):625-626.
  35.  54
    In Praise of Ambivalence.D. Justin Coates - 2022 - New York, NY, USA: Oxford University Press.
    Ambivalence is a form of inner volitional conflict that we experience as being irresolvable without significant cost. Because of this, very few of us relish feelings of ambivalence. Yet for many in the Western philosophical tradition, ambivalence is not simply an unappealing experience that's hard to manage. According to Unificationists--whose view finds its historical roots in Plato and Augustine and is ably defended by contemporary philosophers such as Harry Frankfurt and Christine Korsgaard--ambivalence is a failure of well-functioning agency. The reasons (...)
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  36. What's wrong with exploitation?Justin Schwartz - 1995 - Noûs 29 (2):158-188.
    Marx thinks that capitalism is exploitative, and that is a major basis for his objections to it. But what's wrong with exploitation, as Marx sees it? (The paper is exegetical in character: my object is to understand what Marx believed,) The received view, held by Norman Geras, G.A. Cohen, and others, is that Marx thought that capitalism was unjust, because in the crudest sense, capitalists robbed labor of property that was rightfully the workers' because the workers and not the capitalists (...)
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  37. Black and white and the inverted spectrum.Justin Broackes - 2007 - Philosophical Quarterly 57 (227):161-175.
    To the familiar idea of an undetectable spectrum inversion some have added the idea of inverted earth. This new combination of ideas is even harder to make coherent, particularly as it applies to a supposed inversion of black and white counteracted by an environmental switch of these. Black and white exhibit asymmetries in their connections with illumination, shadow and visibility, which rule out their being reversed. And since the most saturated yellow is light and the most saturated blue dark, yellow (...)
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  38.  17
    Ultimate ambiguities: investigating death and liminality.Peter Berger & Justin E. A. Kroesen (eds.) - 2016 - New York: Berghahn Books.
    Periods of transition are often symbolically associated with death, making the latter the paradigm of liminality. Yet, many volumes on death in the social sciences and humanities do not specifically address liminality. This book investigates these "ultimate ambiguities," assuming they can pose a threat to social relationships because of the disintegrating forces of death, but they are also crucial periods of creativity, change, and emergent aspects of social and religious life. Contributors explore death and liminality from an interdisciplinary perspective and (...)
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  39. Spinoza on Civil Liberation.Justin Steinberg - 2008 - Journal of the History of Philosophy 47 (1):pp. 35-58.
    In the final chapter of the Tractactus Theologico-Politicus , Spinoza declares that “the purpose of the state is, in reality, freedom.” While this remark obviously purports to tell us something important about Spinoza’s conception of the civitas , it is not clear exactly what is revealed. Recently, a number of scholars have interpreted this passage in a way that supports the view that Spinoza was a liberal for whom civic norms are rather more modest than the freedom of the Ethics (...)
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  40. Metacognition is prior.Justin J. Couchman, Mariana V. C. Coutinho, Michael J. Beran & J. David Smith - 2009 - Behavioral and Brain Sciences 32 (2):142-142.
    We agree with Carruthers that evidence for metacognition in species lacking mindreading provides dramatic evidence in favor of the metacognition-is-prior account and against the mindreading-is-prior account. We discuss this existing evidence and explain why an evolutionary perspective favors the former account and poses serious problems for the latter account.
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  41.  92
    Descartes's conceptual distinction and its ontological import.Justin Skirry - 2004 - Journal of the History of Philosophy 42 (2):121-144.
    : Descartes' conceptual distinction (or distinctio rationis) is commonly understood to be a distinction created by the mind's activity without a foundation in re. This paper challenges this understanding partially based on a letter to an unknown correspondent in which Descartes claims not to admit distinctions without a foundation. He goes on to claim that his conceptual distinction is not a distinctio rationis ratiocinantis (i.e. a distinction of reasoning reason) but is something like a formal distinction or, more precisely, a (...)
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  42. Belief de re and de dicto.Justin Broackes - 1986 - Philosophical Quarterly 36 (144):374-383.
  43. From sensory processes to conscious perception.Justin S. Feinstein, Murray B. Stein, Gabriel N. Castillo & Martin P. Paulus - 2004 - Consciousness and Cognition 13 (2):323-335.
    In recent years, cognitive neuroscientists have began to explore the process of how sensory information gains access to awareness. To further probe this process, event-related functional magnetic resonance imaging was used while testing subjects with a paradigm known as the “attentional blink.” In this paradigm, visually presented information sporadically fails to reach awareness. It was found that the magnitude and time course of activation within the anterior cingulate , medial prefrontal cortex , and frontopolar cortex predicted whether or not information (...)
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  44.  85
    Norms and the Agency of Justice.Justin Weinberg - 2009 - Analyse & Kritik 31 (2):319-338.
    In this paper I argue that when thinking about justice, political philosophers should pay more attention to social norms, not just the usual subjects of basic principles, rights, laws, and policies. I identify two widely-endorsed ideas about political philosophy that interfere with recognizing the importance of social norms—ideas I dub ‘compulsoriness’ and ‘institutionalism’—and argue for their rejection. I do this largely by focusing on questions about who can and should be an agent of justice. I argue that careful reflection on (...)
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  45. Ethics and corporate governance: banking on scandal.Justin O'Brien - 2006 - International Journal of Business Governance and Ethics 2 (1):183-196.
     
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  46.  14
    Psychoanalysis is an Antiphilosophy.Justin Clemens - 2013 - Edinburgh: Edinburgh University Press.
    Love, hate, slavery, torture, addiction and death - as this book shows, only psychoanalysis can speak well of such matters. Psychoanalysis was the most important intellectual development of the 20th century, which left no practice from psychiatry to philosophy to politics untouched. Yet it was also in many ways an untouchable project, caught between science and poetry, medicine and hermeneutics. This unsettled, unsettling status has recently induced the philosopher Alain Badiou to characterise psychoanalysis as an 'antiphilosophy', that is, as a (...)
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  47. Functional explanation and metaphysical individualism.Justin Schwartz - 1993 - Philosophy of Science 60 (2):278-301.
    G. A. Cohen defends and Jon Elster criticizes Marxist use of functional explanation. But Elster's mechanical conception of explanation is, contrary to Elster's claims, a better basis for vindication of functional explanation than Cohen's nomological conception, which cannot provide an adequate account of functional explanation. Elster also objects that functional explanation commits us to metaphysically bizarre collective subjects, but his argument requires an implausible reading of methodological individualism which involves an unattractive eliminativism about social phenomena.
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  48.  14
    Irrationality: A History of the Dark Side of Reason.Justin E. H. Smith - 2019 - Princeton: Princeton University Press.
    From sex and music to religion and politics, a history of irrationality and the ways in which it has always been with us—and always will be In this sweeping account of irrationality from antiquity to the rise of Twitter mobs and the election of Donald Trump, Justin Smith argues that irrationality makes up the greater part of human life and history. Ranging across philosophy, politics, and current events, he shows that, throughout history, every triumph of reason has been temporary (...)
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  49.  9
    The Leibniz-Stahl Controversy.François Duchesneau & Justin E. H. Smith (eds.) - 2016 - Yale University Press.
    _The first unabridged English translation of the correspondence between Gottfried Wilhelm Leibniz and Georg Ernst Stahl detailing their opposing philosophies_ The correspondence between the eighteenth-century mathematician and philosopher G. W. Leibniz and G. E. Stahl, a chemist and physician at the court of King Friedrich Wilhelm I of Prussia, known as the Leibniz-Stahl Controversy, is one of the most important intellectual contributions on theoretical issues concerning pre-biological thinking. Editors François Duchesneau and Justin E. H. Smith offer readers the first (...)
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  50.  11
    Problem-Solving and the Challenges to Democracy: Dialogues on the Philosophy and Politics of Knowledge.Raphael Sassower & Justin Cruickshank (eds.) - 2017 - Lanham: Rowman & Littlefield International.
    This timely volume explores pressing questions that relate to democracy and the politics of knowledge, in a dialogue based on developing and applying philosophies that stress the importance of dialogue, democracy and criticism.
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