Modeling Practices

This paper was written for and presented at a symposium on Multiple Realizability at the Central Division of the APA in 2022. It's in somewhat rough shape, especially the later parts. I hope to be in a position soon to post a revised and more carefully worked out version. The basic argument of the first half is this: Realization of the interesting sort (and thus MR of the interesting sort) requires tidy separation of levels (with realizers being at a lower (...) level than that which they realize). The success of mixed-scale, mixed-resource (i.e., multi-grain) modeling strongly suggests that such a tidy separation of levels is not in the cards. Thus, MR is (likely) not a widespread phenomenon in our universe. The second half of the paper develops a relation of "multiple explainability" that is meant to play the role, in many contexts, of MR, while being metaphysically and methodologically messier than MR. (shrink)

This paper constitutes a radical departure from the existing philosophical literature on models, modeling-practices, and model-based science. I argue that the various entities and practices called 'models' and 'modeling-practices' are too diverse, too context-sensitive, and serve too many scientific purposes and roles, as to allow for a general philosophical analysis. From this recognition an alternative view emerges that I shall dub model anarchism.

In this paper, I shall provide a novel response to the argument from context-sensitivity against truth-conditional semantics. It is often argued that the contextual influences on truth-conditions outstrip the resources of standard truth-conditional accounts, and so truth-conditional semantics rests on a mistake. The argument assumes that truth-conditional semantics is legitimate if and only if natural language sentences have truth-conditions. I shall argue that this assumption is mistaken. Truth-conditional analyses should be viewed as idealised approximations of the complexities of natural language (...) meaning. From this perspective, disparity between the scientific model and its real-world target is to be expected. I elaborate on what such an approach to semantics would look like. (shrink)

The philosophical literatures on models and thought experiments have been developing exponentially, and independently, for decades. This independence is surprising, given how similar models and thought experiments are. They each have “lives of their own,” they sit between theory and experience, they are important for both pedagogy and cutting-edge science, they galvanize conceptual changes and paradigm shifts, and they involve entertaining imaginary scenarios and working out what happens. Recently, philosophers have begun to highlight these similarities. This entry aims at taking (...) the idea further, by trying to systematically identify places where insights from one literature can be taken up in the other. Along the way, important differences will also be highlighted. (shrink)

From Plato to the present day, political theorists have used models of idealistic societies to think about politics. How can these idealistic models inform our thinking about political life in our non-ideal world? Not, as many political theorists have hoped, by providing normative guidance -- by showing us how things should be or where we should go. Even still, we can use these models to interpret the concepts we depend on to explain and evaluate political behavior and institutions, thereby sharpening (...) our explanations of how things work and our estimations of how to make things better. Seeing idealistic models in this light reveals a promising route to a form of political inquiry that integrates our explanatory aims and our normative aspirations. -/- (Updated: October 2024. The book is in production for publication by Oxford University Press, to appear in the Philosophy, Politics, and Economics series. I have uploaded the table of contents, chapter 1, and the bibliography.). (shrink)

When it originated in the late 19th century, psychometrics was a field with both a scientific and a social mission: psychometrics provided new methods for research into individual differences, and at the same time, these psychometric instruments were considered a means to create a new social order. In contrast, contemporary psychometrics - due to its highly technical nature and its limited involvement in substantive psychological research - has created the impression of being a value-free discipline. In this article, we develop (...) a contrasting characterization of contemporary psychometrics as a value-laden discipline. We expose four such values: that individual differences are quantitative (rather than qualitative), that measurement should be objective in a specific sense, that test items should be fair, and that utility of a model is more important than its truth. Our goal is not to criticize psychometrics for employing these values, but rather to bring them into the open and to show that these values are not inevitable and are in need of systematic evaluation. (shrink)

According to a widely held view, scientific modelling consists in entertaining a set of model descriptions that specify a model. Rather than studying the phenomenon of interest directly, scientists investigate the phenomenon indirectly via a model in the hope of learning about some of the phenomenon’s features. I call this view the description-driven modelling (DDM) account. I argue that although an accurate description of much of scientific research, the DDM account is found wanting as regards the mechanistic modelling found in (...) many branches of biology. By analysing research practices in cancer immunology concerning the development of mechanistic models of the process of cancer metastasis, this paper presents and argues for a complementary account of scientific modelling, herein called the experimentation-driven modelling (EDM) account. In EDM, scientists investigate a set of experimental systems and then integrate the results obtained from experiments into a mechanistic model. While EDM shares some key features with DDM, the two are epistemically very different approaches to research. (shrink)

Mitchell & Gronenborn ( 2017 ) propose that we account for the presence of multiple models of protein structure, each produced in different contexts, through the framework of integrative pluralism. I argue that two interpretations of this framework are available, neither of which captures the relationship between a model and the protein structure it represents or between multiple models of protein structure. Further, it inclines us toward concluding prematurely that models of protein structure are right in their contexts and makes (...) extrapolation of findings from one context to another seem unwarranted. Instead, protein structure determination ought to be understood as _modestly monistic_. There is one model for every protein in each physicochemical context, and models of the same protein produced in different contexts are compatible with one another. ‘Integrating’ multiple models amounts to extrapolating from one context to another; this is possible because the effect of context on protein folding is relatively weak and predictable. Modest monism better describes the practice of protein structure determination than integrative pluralism and enables greater attention to how context affects protein folding. (shrink)

A conspicuous feature of contemporary modelling practices is the use of the same mathematical forms and modelling methods across different scientific domains. This model transfer raises many philosophical questions concerning, for example, the exact object of transfer, the relationship between the model and the target domain, the specific challenges such transfer confronts, and the ways in which model transfer relates to scientific progress. While the interest in studying model transfer has increased among philosophers of science in recent years, the phenomenon (...) has not yet received its due attention. The literature is scattered and much of it has addressed questions around the factors that might explain model transfer, such as whether the different target phenomena to which a model is applied eventually prove to be structurally and dynamically similar, or whether they have to share more fundamental ontological features that explain the interdisciplinary success of distinct models. This chapter surveys the existing literature on model transfer with the main goal of highlighting the main findings of existing discussions and pointing out open issues whose discussion would improve our understanding of this highly relevant phenomenon in science. (shrink)

The digitalization of human society continues at a relentless rate. However, to develop modern information technologies, the increasing complexity of the real-world must be modeled, suggesting the general need to reconsider how to carry out conceptual modeling. This research proposes that the often-overlooked notion of ‘‘system’’ should be a separate, and core, conceptual modeling construct and argues for incorporating it and related concepts, such as emergence, into existing approaches to conceptual modeling. The work conducts a synthesis of the ontology of (...) systems and general systems theory. These modeling foundations are then used to propose a CESM+ template for conducing systems-grounded conceptual modeling. Several new conceptual modeling notations are introduced. The systemist modeling is then applied to a case study on the development of a citizen science platform. The case demonstrates the potential contributions of the systemist approach and identifies specific implications of explicit modeling with systems for theory and practice. The paper provides recommendations for how to incorporate systems into existing projects and suggests fruitful opportunities for future conceptual modeling research. (shrink)

This paper argues that investigations into how to best make something often provide researchers with an objectual understanding of their target phenomena. This argument starts with an extended investigation into the non-representational uses of models. In particular, we identify a special sort of “design model” whose aim is to guide the production of phenomena. Clarifying how these design models are evaluated shows that they are evaluated in different ways than representational models. Once the character of design models has been fixed, (...) we argue that grasping design models can provide objectual understanding of phenomena. This argument proceeds through a critical engagement with Dellsén’s ( 2020 ) position that a grasp of a good representational model of dependencies provides objectual understanding of a phenomenon. We agree with Dellsén that this is one way to achieve understanding, but maintain that grasping a good design model is another way to achieve understanding. The paper concludes by considering some important objections to our proposal and also by noting some of the broader questions about understanding and knowledge in both science and engineering. (shrink)

Deep learning (DL) is a statistical technique for pattern classification through which AI researchers train artificial neural networks containing multiple layers that process massive amounts of data. I present a three-level account of explanation that can be reasonably expected from DL models in cognitive neuroscience and that illustrates the explanatory dynamics within a future-biased research program (Feest Philosophy of Science 84:1165–1176, 2017 ; Doerig et al. Nature Reviews: Neuroscience 24:431–450, 2023 ). By relying on the mechanistic framework (Craver Explaining the (...) brain: Mechanisms and the mosaic unity of neuroscience. Clarendon, 2007 ; Stinson Eppuor si muove: Doing history and philosophy of Science with Peter Machamer. Springer, 2017, The Routledge Handbook of the computational mind. Routledge, 2018 ), I develop an account that corresponds to the stages of mechanism discovery, i.e., our shifting epistemic position and epistemic goals, and propose a representative model for each level. Generic, theoretical DL models at _Level 1_ address the general features of a cognitive phenomenon through exploration and provide us with how-possibly explanations. On the other hand, DL models at _Level 2_ either identify the interaction between the features or represent the epistemic stage when the researcher is still unsure if the modeled features are crucial or arbitrary. These models should provide us with how-plausibly explanations. Finally, specific DL models of specific brain areas, i.e., ersatz models filled with relevant cognitive and neuroscientific details, are at _Level 3_. At this level, a researcher can advance how-actually explanations of cognitive phenomena. The main strength of this account is that it elucidates both _global explanatory dynamics_ and _local explanatory dynamics_ (cf. Dresow Synthese 199:10441–10474, 2021 ). The former occurs when the transition between levels happens in accordance with the process of obtaining more details about a particular cognitive phenomenon through multiple DL models. The latter, meanwhile, involves cases in which the transition between levels takes place within a single DL model by elucidating internal mechanisms (e.g., using Explainable AI techniques for rendering models more transparent). (shrink)

A critical review of Collin Rice's book, Leveraging Distortions: Explanation, Idealization, and Universality in Science.

Even in areas of philosophy of science that don’t involve formal treatments of truth, one’s background view of truth still centrally shapes views on other issues. I offer an informal way to think about truth as trueing, like trueing a bicycle wheel. This holist approach to truth provides a way to discuss knowledge products like models in terms of how well-trued they are to their target. Trueing emphasizes: the process by which models are brought into true; how the idealizations in (...) models are not false but rather like spokes in appropriate tension to achieve a better-trued fit to target; and that this process is not accomplished once and done forever, but instead requires upkeep and ongoing fine-tuning. I conclude by emphasizing the social importance of being a pragmatist about truth in order to accurately answer questions about science such as, “but do we really know that…”. (shrink)

Scientific research is constrained by limited resources, so it is imperative that it be conducted efficiently. This paper introduces the notion of epistemic expression, a kind of representation that expedites the solution of research problems. Epistemic expressions are representations that (i) contain information in a way that enables more reliable information to place the most stringent constraints on possible solutions and (ii) make new information readily extractible by biasing the search through that space. I illustrate these conditions using historical and (...) contemporary examples of biomolecular structure determination. Then, I argue that the notion of epistemic expression parts ways with pragmatic accounts of scientific representation and an understanding of models as artifacts, neither of which require models to accurately represent. Explicating epistemic expression thus fills a gap in our understanding of scientific practice, extending Morrison and Morgan's (1999) conception of models as investigative instruments. (shrink)

Models are indispensable tools of scientific inquiry, and one of their main uses is to improve our understanding of the phenomena they represent. How do models accomplish this? And what does this tell us about the nature of understanding? While much recent work has aimed at answering these questions, philosophers' focus has been squarely on models in empirical science. I aim to show that pure mathematics also deserves a seat at the table. I begin by presenting two cases: Cramér’s random (...) model of the prime numbers and the function field model of the integers. These cases show that mathematicians, like empirical scientists, rely on unrealistic models to gain understanding of complex phenomena. They also have important implications for some much-discussed theses about scientific understanding. First, modeling practices in mathematics confirm that one can gain understanding without obtaining an explanation. Second, these cases undermine the popular thesis that unrealistic models confer understanding by imparting counterfactual knowledge. (shrink)

It is often claimed that one can avoid the kind of underdetermination that is a typical consequence of symmetries in physics by stipulating that symmetry-related models represent the same state of affairs (Leibniz Equivalence). But recent commentators (Dasgupta 2011; Pooley 2021; Pooley and Read 2021; Teitel 2021a) have responded that claims about the representational capacities of models are irrelevant to the issue of underdetermination, which concerns possible worlds themselves. In this paper I distinguish two versions of this objection: (1) that (...) a theory’s formalism does not (fully) determine the space of physical possibilities, and (2) that the relevant notion of possibility is not physical possibility. I offer a refutation of each. (shrink)

Climate science is expected to provide usable information to policy-makers, to support the resolution of climate change. The complex, multiply connected nature of climate change as a social problem is reviewed and contrasted with current modular and discipline-bounded approaches in climate science. We argue that climate science retains much of its initial “physics-first” orientation, and that it adheres to a problematic notion of objectivity as freedom from value judgments. Together, these undermine its ability to provide usable information. We develop the (...) notion of usability using work from the literature on adaptation, but our argument applies to all of climate science. We illustrate the tension between usability and the objective, physics-first orientation of climate science with an example about model development practices in climate science. For solutions, we draw on two frameworks for science which responds to societal challenges: post-normal science and mandated science. We generate five recommendations for adapting the practice of climate science, to produce more usable information and thereby respond more directly to the social challenge of climate change. These are: (1) integrated cross-disciplinarity, (2) wider involvement of stakeholders throughout the lifecycle of a climate study, (3) a new framing of the role of values in climate science, (4) new approaches to uncertainty management, and (5) new approaches to uncertainty communication. (shrink)

I examine error diagnosis (model-model disagreement) in climate model intercomparisons including its difficulties, fruitful examples, and prospects for streamlining error diagnosis. I suggest that features of climate model intercomparisons pose a more significant challenge for error diagnosis than do features of individual model construction and complexity. Such features of intercomparisons include, e.g., the number of models involved, how models from different institutions interrelate, and what scientists know about each model. By considering numerous examples in the climate modeling literature, I distill (...) general strategies (e.g., employing physical reasoning and using dimension reduction techniques) used to diagnose model error. Based on these examples, I argue that an error repertoire could be beneficial for improving error diagnosis in climate modeling, although constructing one faces several difficulties. Finally, I suggest that the practice of error diagnosis demonstrates that scientists have a tacit-yet-working understanding of their models which has been under-appreciated by some philosophers. (shrink)

Model transfer is the scientific practice of taking a model which was initially applied in one particular kind of target system in some particular scientific domain and applying it to represent a novel target system in a novel scientific domain. This paper motivates a realist interpretation of empirically successful model transfers and the implications of such an interpretation for the metaphysics of science. The paper uses two examples of empirically successful model transfer, the first of which is a strikingly successful (...) recent application of the Ising model to neurobiology, the second of which is Maxwell’s “method of physical analogy”. The paper first defends the need for a realist picture regarding the transfer of model templates and the apparent discovery of physical analogies. Then, it examines further the implications of such a picture, finding it to be quite revisionary in its conception of the nature of causal processes. (shrink)

What has fiction to do with science? At first glance, the two activities seem to have entirely different aims and products. Science aims at truth, while fiction can deviate wildly from it. Science produces theories, which we are asked to believe. Fiction produces stories, which we are asked to imagine. Given these differences, associating science and fiction might seem like a serious mistake, or even a threat to science. And yet many authors have tried to understand science by looking to (...) fiction. This article will consider three strands of thought on the topic: Hans Vaihinger’s classic work on fictions; fictionalist views, especially van Fraassen’s constructive empiricism; and recent work on models and fiction. As we will see, none of these strands pose a threat to science. Instead, each tries to understand the nature of scientific knowledge by drawing on fiction in different ways, and for different theoretical purposes. (shrink)

Biologists often study particular biological systems as models of a phenomenon of interest even if they already know that the phenomenon is produced by diverse mechanisms and hence none of those systems alone can sufficiently represent it. To understand this modeling practice, the present paper provides an account of how multiple model systems can be used to study a phenomenon that is produced by diverse mechanisms. Even if generalizability of results from a single model system is significantly limited, generalizations concerning (...) specific aspects of mechanisms often hold across certain ranges of biological systems, which enables multiple model systems to jointly represent such a phenomenon. Comparing mechanisms that operate in different biological systems as examples of the same phenomenon also facilitates characterization and investigation of individual mechanisms. I also compare my account with two existing accounts of the use of multiple model systems and argue that my account is distinct from and complementary to them. (shrink)

Previously, I (Boesch 2017) described a notion called “representational licensing”—the set of activities of scientific practice by which scientists establish the intended representational use of a vehicle. In this essay, I expand and develop this concept of representational licensing. I begin by showing how the concept is of value for both pragmatic and substantive approaches to scientific representation. Then, through the examination of a case study of the Mississippi River Basin Model, I point out and explain some of the activities (...) of representational licensing that help to establish the representational nature of this model. Throughout the exploration of the case study, I pause to identify some important lessons which apply more generally about the nature of representational licensing in science. (shrink)

Mitchell & Gronenborn propose that we account for the presence of multiple models of protein structure, each produced in different contexts, through the framework of integrative pluralism. I argue that two interpretations of this framework are available, neither of which captures the relationship between a model and the protein structure it represents or between multiple models of protein structure. Further, it inclines us toward concluding prematurely that models of protein structure are right in their contexts and makes extrapolation of findings (...) from one context to another seem unwarranted. Instead, protein structure determination ought to be understood as modestly monistic. There is one model for every protein in each physicochemical context, and models of the same protein produced in different contexts are compatible with one another. ‘Integrating’ multiple models amounts to extrapolating from one context to another; this is possible because the effect of context on protein folding is relatively weak and predictable. Modest monism better describes the practice of protein structure determination than integrative pluralism and enables greater attention to how context affects protein folding. (shrink)

A well known conception of axiomatization has it that an axiomatized theory must be interpreted, or otherwise coordinated with reality, in order to acquire empirical content. An early version of this account is often ascribed to key figures in the logical empiricist movement, and to central figures in the early “formalist” tradition in mathematics as well. In this context, Reichenbach’s “coordinative definitions” are regarded as investing abstract propositions with empirical significance. We argue that over-emphasis on the abstract elements of this (...) approach fails to appreciate a rich tradition of empirical axiomatization in the late nineteenth and early twentieth centuries, evident in particular in the work of Moritz Pasch, Heinrich Hertz, David Hilbert, and Reichenbach himself. We claim that such over-emphasis leads to a misunderstanding of the role of empirical facts in Reichenbach’s approach to the axiomatization of a physical theory, and of the role of Reichenbach’s coordinative definitions in particular. (shrink)

This essay replies to Michael Morreau and Erik J. Olsson’s ‘Learning from Ranters: The Effect of Information Resistance on the Epistemic Quality of Social Network Deliberation’. Morreau and Olsson use simulations to suggest that false ranters—agents who do not update their beliefs and only ever assert false claims—do not diminish the epistemic value of deliberation for other agents and can even be epistemically valuable. They argue conclude that “Our study suggests that including [false] ranters has little or no negative effect (...) on the epistemic value of social deliberation. Including them can even be epistemically beneficial. -/- I present concerns about their model and I enumerate some epistemic values that their discussion omits. I first raise two interrelated worries: (i.) The model is too simple; real-life irresponsible assertors do not speak uniformly falsely, for example. And tracking testifiers’ reliability demands cognitive resources. (ii.) In reality, we do not treat a person’s assertions that p as evidence that not p, especially not for all their assertions. I argue that these simplifications threat Morreau and Olsson conclusion. -/- I then enumerate epistemic values and disvalues that Morreau and Olsson do not discuss, but which bear on the value of false assertions and false ranters in their simulation and in real life. Candidate disvalues include: False beliefs of ranters; cognitive costs of discerning and recalling testifiers’ reliability; distrust; epistemic polarisatin; a prevalence of false assertion can impugn all testimony, including that of reliable testifiers. And candidate values include: a prevalence of true beliefs and assertions; attention being directed towards the right things; well-functioning trust relationships; believing people’s assertions; healthy discussion; epistemic respect; learning together. -/- . (shrink)

The purpose of this article is to establish a connection between modelling practices and interpretive approaches in quantum mechanics, taking as a starting point the literature on scientific representation. Different types of modalities play different roles in scientific representation. I postulate that the way theoretical structures are interpreted in this respect affects the way models are constructed. In quantum mechanics, this would be the case in particular of initial conditions and observables. I examine two formulations of quantum mechanics, the standard (...) wave-function formulation and the consistent histories formulation, and show that they correspond to opposite stances, which confirms my approach. Finally, I examine possible strategies for deciding between these stances. (shrink)

Computational modeling should play a central role in philosophy. In this introduction to our topical collection, we propose a small topology of computational modeling in philosophy in general, and show how the various contributions to our topical collection fit into this overall picture. On this basis, we describe some of the ways in which computational models from other disciplines have found their way into philosophy, and how the principles one found here still underlie current trends in the field. Moreover, we (...) argue that philosophers contribute to computational modeling not only by building their own models, but also by thinking about the various applications of the method in philosophy and the sciences. In this context, we note that models in philosophy are usually simple, while models in the sciences are often more complex and empirically grounded. Bridging certain methodological gaps that arise from this discrepancy may prove to be challenging and fruitful for the further development of computational modeling in philosophy and beyond. (shrink)

Sometimes, scientific models are either intended to or plausibly interpreted as representing nonactual but possible targets. Call this “hypothetical modeling”. This paper raises two epistemological challenges concerning hypothetical modeling. To begin with, I observe that given common philosophical assumptions about the scope of objective possibility, hypothetical models are fallible with respect to what is objectively possible. There is thus a need to distinguish between accurate and inaccurate hypothetical modeling. The first epistemological challenge is that no account of the epistemology of (...) hypothetical models seems to cohere with the most characteristic function of scientific modeling in general, i.e., surrogative representation. The second epistemological challenge is a version of “reliability challenges” familiar from other areas. There is a challenge to explain how hypothetical models could be a reliable guide to what is possible, given that they are not and cannot be compared against their nonactual targets and updated accordingly. I close with some brief remarks on possible solutions to these challenges. (shrink)

This paper provides a historical analysis of a shift in the way animal models of mental disorders were conceptualized: the shift from the mid-twentieth-century view, adopted by some, that animal models model syndromes classified in manuals such as the Diagnostic and Statistical Manual of Mental Disorders (DSM), to the later widespread view that animal models model component parts of psychiatric syndromes. I argue that in the middle of the twentieth century the attempt to maximize the face validity of animal models (...) sometimes led to the pursuit of the ideal of an animal model that represented a behaviorally defined psychiatric syndrome as described in manuals such as the DSM. I show how developments within psychiatric genetics and related criticism of the DSM in the 1990s and 2000s led to the rejection of this ideal and how researchers in the first decade of the twenty-first century came to believe that animal models of mental disorders should model component parts of mental disorders, adopting a so-called endophenotype approach. (shrink)

In the context of pluralization, sophistication, and combination of formal models, it is becoming difficult to propose uniform – or even comparable – model comparison practices. This paper outlines a broad and classificatory comparative epistemology of models. The aim of this epistemology is to propose applicable, and if necessary rectifiable, conceptual tools that can be useful to modellers as well as to historians and epistemologists. The notion of model characteristic vector – incorporating concepts of function, nature, principle and use of (...) the model – is introduced for this end. This proposal has been developed to serve a better-equipped writing of a comparative and interdisciplinary history of models and simulations. (shrink)

How could the initial, drastic decisions to implement “lockdowns” to control the spread of COVID-19 infections be justifiable, when they were made on the basis of such uncertain evidence? We defend the imposition of lockdowns in some countries by first, and focusing on the UK, looking at the evidence that undergirded the decision, second, arguing that this provided us with sufficient grounds to restrict liberty given the circumstances, and third, defending the use of poorly-empirically-constrained epidemiological models as tools that can (...) legitimately guide public policy. (shrink)

While the predominant focus of the philosophical literature on scientific modeling has been on single-scale models, most systems in nature exhibit complex multiscale behavior, requiring new modeling methods. This challenge of modeling phenomena across a vast range of spatial and temporal scales has been called the tyranny of scales problem. Drawing on research in the geosciences, I synthesize and analyze a number of strategies for taming this tyranny in the context of conceptual, physical, and mathematical modeling. This includes several strategies (...) that can be deployed in physical modeling, even when strict dynamical scaling fails. In all cases, I argue that having an adequate conceptual model—given both the nature of the system and the particular purpose of the model—is essential. I draw a distinction between depiction and representation, and use this research in the geosciences to advance a number of debates in the philosophy of modeling. (shrink)

We critically engage two traditional views of scientific data and outline a novel philosophical view that we call the pragmatic-representational view of data. On the PR view, data are representations that are the product of a process of inquiry, and they should be evaluated in terms of their adequacy or fitness for particular purposes. Some important implications of the PR view for data assessment, related to misrepresentation, context-sensitivity, and complementary use, are highlighted. The PR view provides insight into the common (...) but little-discussed practices of iteratively reusing and repurposing data, which result in many datasets’ having a phylogeny—an origin and complex evolutionary history—that is relevant to their evaluation and future use. We relate these insights to the open-data and data-rescue movements, and highlight several future avenues of research that build on the PR view of data. (shrink)

In an ever-changing world, when we search for answers on our present challenges, it can be tricky to extrapolate past realities when concerning science-based issues. Climate change, public health or artificial intelligence embody issues on how scientific evidence is often challenged, as false beliefs could drive the design of public policies and legislation. Therefore , how can we foresee if science can tip the scales of political legislation? In this article, we outline how models of historical cases can be used (...) to predict and understand how scientific evidence can influence the emergence (or fall-back) of science based-legislation. We also present frameworks on how to use past episodes of History of Science and Alternative History insights to build epistemic models, based on previous successful approaches on the spread of scientific misinformation. These models will help the accuracy of the design of eventual alternative realities, that can come insightful on present decision making methodologies. (shrink)

This article explores the use of model organisms in studying the cognitive phenomenon of decision-making. Drawing on the framework of biological control to develop a skeletal conception of decision-making, we show that two core features of decision-making mechanisms can be identified by studying model organisms, such as E. coli, jellyfish, C. elegans, lamprey, and so on. First, decision mechanisms are distributed and heterarchically structured. Second, they depend heavily on chemical information processing, such as that involving neuromodulators. We end by discussing (...) the implications for studying distinctively human decision-making. (shrink)

This paper argues that an important type of experiment-target inference, extrapolating causal effects, requires models to be successful. Focusing on extrapolation in Evidence-Based Policy, it is ar...

The epistemic value of models has traditionally been approached from a representational perspective. This paper argues that the artifactual approach evades the problem of accounting for representation and better accommodates the modal dimension of modeling. From an artifactual perspective, models are viewed as erotetic vehicles constrained by their construction and available representational tools. The modal dimension of modeling is approached through two case studies. The first portrays mathematical modeling in economics, while the other discusses the modeling practice of synthetic biology, (...) which exploits and combines models in various modes and media. Neither model intends to represent any actual target system. Rather, they are constructed to study possible mechanisms through the construction of a model system with built-in dependencies. (shrink)

Arguments from non-causal analogy form a distinctive class of analogical arguments in science not recognized in authoritative classifications by, e.g., Hesse and Bartha. In this paper, I illustrate this novel class of scientific analogies by means of historical examples from physics, biology and economics, at the same time emphasizing their broader significance for contemporary debates in epistemology.

The “universality” of critical phenomena is much discussed in philosophy of scientific explanation, idealizations and philosophy of physics. Lange and Reutlinger recently opposed Batterman concerning the role of some deliberate distortions in unifying a large class of phenomena, regardless of microscopic constitution. They argue for an essential explanatory role for “commonalities” rather than that of idealizations. Building on Batterman's insight, this article aims to show that assessing the differences between the universality of critical phenomena and two paradigmatic cases of “commonality (...) strategy”—the ideal gas model and the harmonic oscillator model—is necessary to avoid the objections raised by Lange and Reutlinger. Taking these universal explanations as benchmarks for critical phenomena reveals the importance of the different roles played by analogies underlying the use of the models. A special combination of physical and formal analogies allows one to explain the epistemic autonomy of the universality of critical phenomena through an explicative loop. (shrink)

The IHME Covid-19 prediction model has been one of the most influential Covid models in the United States. Early on, it received heavy criticism for understating the extent of the epidemic. I argue that this criticism was based on a misunderstanding of the model. The model was best interpreted not as attempting to forecast the actual course of the epidemic. Rather, it was attempting to make a conditional projection: telling us how the epidemic would unfold, given certain assumptions. This misunderstanding (...) of the IHME’s model prevented the public from seeing how dire the model’s projections actually were. (shrink)

Philosophers of science have recently taken care to highlight different modeling practices where scientific models primarily contribute modal information, in the form of for example possibility claims, how-possibly explanations, or counterfactual conditionals. While examples abound, comparatively little attention is being paid to the question of under what conditions, and in virtue of what, models can perform this epistemic function. In this paper, we firstly delineate modal modeling from other modeling practices, and secondly reviewattempts to spell out and explain the epistemic (...) success conditions of modal modeling. The aim is to more clearly expose the respective justificatory strategies of these accounts, and secondly, to identify lacunae where further work is needed. (shrink)

Making sense of why something succeeded or failed is central to scientific practice: it provides an interpretation of what happened, i.e. an hypothesized explanation for the results, that informs scientists’ deliberations over their next steps. In philosophy, the realism debate has dominated the project of making sense of scientists’ success and failure claims, restricting its focus to whether truth or reliability best explain science’s most secure successes. Our aim, in contrast, will be to expand and advance the practice-oriented project sketched (...) by Arthur Fine in his work on the Natural Ontological Attitude. An important obstacle to articulating a positive program, we suggest, has been overlooking how scientists adopt standardized rules and procedures in order to define and operationalize meanings for success and failure relative to their situated goals. To help fill this gap, we introduce two new ideas, design specifications and track records, and show how they advance our ability to make sense of scientific modeling practices while maintaining a deflationary stance toward the realism debate. (shrink)

Precision medicine and molecular systems medicine (MSM) are highly utilized and successful approaches to improve understanding, diagnosis, and treatment of many diseases from bench-to-bedside. Especially in the COVID-19 pandemic, molecular techniques and biotechnological innovation have proven to be of utmost importance for rapid developments in disease diagnostics and treatment, including DNA and RNA sequencing technology, treatment with drugs and natural products and vaccine development. The COVID-19 crisis, however, has also demonstrated the need for systemic thinking and transdisciplinarity and the limits (...) of MSM: the neglect of the bio-psycho-social systemic nature of humans and their context as the object of individual therapeutic and population-oriented interventions. COVID-19 illustrates how a medical problem requires a transdisciplinary approach in epidemiology, pathology, internal medicine, public health, environmental medicine, and socio-economic modeling. Regarding the need for conceptual integration of these different kinds of knowledge we suggest the application of general system theory (GST). This approach endorses an organism-centered view on health and disease, which according to Ludwig von Bertalanffy who was the founder of GST, we call Organismal Systems Medicine (OSM). We argue that systems science offers wider applications in the field of pathology and can contribute to an integrative systems medicine by (i) integration of evidence across functional and structural differentially scaled subsystems, (ii) conceptualization of complex multilevel systems, and (iii) suggesting mechanisms and non-linear relationships underlying the observed phenomena. We underline these points with a proposal on multi-level systems pathology including neurophysiology, endocrinology, immune system, genetics, and general metabolism. An integration of these areas is necessary to understand excess mortality rates and polypharmacological treatments. In the pandemic era this multi-level systems pathology is most important to assess potential vaccines, their effectiveness, short-, and long-time adverse effects. We further argue that these conceptual frameworks are not only valid in the COVID-19 era but also important to be integrated in a medicinal curriculum. (shrink)

We were slightly concerned, upon having read Eric Winsberg, Jason Brennan and Chris Surprenant’s reply to our paper “Were Lockdowns Justified? A Return to the Facts and Evidence”, that they may have fundamentally misunderstood the nature of our argument, so we issue the following clarification, along with a comment on our motivations for writing such a piece, for the interested reader.

This article offers a characterization of what I call multiple-models juxtaposition, a strategy for managing trade-offs among modeling desiderata. MMJ displays models of distinct phenomena to...

We address the need for a model by considering two competing theories regarding the origin of life: (i) the Metabolism First theory, and (ii) the RNA World theory. We discuss two interrelated points, namely: (i) Models are valuable tools for understanding both the processes and intricacies of origin-of-life issues, and (ii) Insights from models also help us to evaluate the core objection to origin-of-life theories, called “the inefficiency objection”, which is commonly raised by proponents of both the Metabolism First theory (...) and the RNA World theory against each other. We use Simpson’s Paradox (SP) as a tool for challenging this objection. We will use models in various senses, ranging from taking them as representations of reality to treating them as theories/accounts that provide heuristics for probing reality. In this paper, we will frequently use models and theories interchangeably. Additionally, we investigate Conway’s Game of Life and contrast it with our SP-based approach to emergence-of-life issues. Finally, we discuss some of the consequences of our view. A scientific model is testable in three senses: (i) a logical sense, (ii) a nomological sense, and (iii) a current technological sense. The SP-based model is testable in the first two senses but it is not feasible to test it using current technology. (shrink)