Results for 'Lindsay Cowell'

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  1. Infectious Disease Ontology.Lindsay Grey Cowell & Barry Smith - 2009 - In Infectious Disease Informatics. New York: Springer New York. pp. 373-395.
    Technological developments have resulted in tremendous increases in the volume and diversity of the data and information that must be processed in the course of biomedical and clinical research and practice. Researchers are at the same time under ever greater pressure to share data and to take steps to ensure that data resources are interoperable. The use of ontologies to annotate data has proven successful in supporting these goals and in providing new possibilities for the automated processing of data and (...)
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  2. The Infectious Disease Ontology in the Age of COVID-19.Shane Babcock, Lindsay G. Cowell, John Beverley & Barry Smith - 2021 - Journal of Biomedical Semantics 12 (13).
    The Infectious Disease Ontology (IDO) is a suite of interoperable ontology modules that aims to provide coverage of all aspects of the infectious disease domain, including biomedical research, clinical care, and public health. IDO Core is designed to be a disease and pathogen neutral ontology, covering just those types of entities and relations that are relevant to infectious diseases generally. IDO Core is then extended by a collection of ontology modules focusing on specific diseases and pathogens. In this paper we (...)
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  3. Towards an Ontological Representation of Resistance: The Case of MRSA.Albert Goldfain, Barry Smith & Lindsay G. Cowell - 2011 - Journal of Biomedical Informatics 44 (1):35-41.
    This paper addresses a family of issues surrounding the biological phenomenon of resistance and its representation in realist ontologies. The treatments of resistance terms in various existing ontologies are examined and found to be either overly narrow, internally inconsistent, or otherwise problematic. We propose a more coherent characterization of resistance in terms of what we shall call blocking dispositions, which are collections of mutually coordinated dispositions which are of such a sort that they cannot undergo simultaneous realization within a single (...)
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  4. Dispositions and the Infectious Disease Ontology.Albert Goldfain, Barry Smith & Lindsay Cowell - 2010 - In Formal Ontology in Information Systems: Proceedings of the Sixth International Conference (FOIS). IOS Press. pp. 400-413.
    This paper addresses the use of dispositions in the Infectious Disease Ontology (IDO). IDO is an ontology constructed according to the principles of the Open Biomedical Ontology (OBO) Foundry and uses the Basic Formal Ontology (BFO) as an upper ontology. After providing a brief introduction to disposition types in BFO and IDO, we discuss three general techniques for representing combinations of dispositions under the headings blocking dispositions, complementary dispositions, and collective dispositions. Motivating examples for each combination of dispositions is given (...)
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  5. Constructing a lattice of Infectious Disease Ontologies from a Staphylococcus aureus isolate repository.Albert Goldfain, Lindsay G. Cowell & Barry Smith - 2012 - In Goldfain Albert, Cowell Lindsay G. & Smith Barry (eds.), Proceeedings of the Third International Conference on Biomedical Ontology (CEUR 897).
    A repository of clinically associated Staphylococcus aureus (Sa) isolates is used to semi‐automatically generate a set of application ontologies for specific subfamilies of Sa‐related disease. Each such application ontology is compatible with the Infectious Disease Ontology (IDO) and uses resources from the Open Biomedical Ontology (OBO) Foundry. The set of application ontologies forms a lattice structure beneath the IDO‐Core and IDO‐extension reference ontologies. We show how this lattice can be used to define a strategy for the construction of a new (...)
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  6. Ontological representation of CDC Active Bacterial Core Surveillance Case Reports.Albert Goldfain, Barry Smith & Lindsay G. Cowell - 2014 - Proceedings of the Fifth International Conference on Biomedical Ontology 1327:74-77.
    The Center for Disease Control and Prevention’s Active Bacterial Core Surveillance (CDC ABCs) Program is a collaborative effort betweeen the CDC, state health departments, laboratories, and universities to track invasive bacterial pathogens of particular importance to public health [1]. The year-end surveillance reports produced by this program help to shape public policy and coordinate responses to emerging infectious diseases over time. The ABCs case report form (CRF) data represents an excellent opportunity for data reuse beyond the original surveillance purposes.
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  7. Proceeedings of the Third International Conference on Biomedical Ontology (CEUR 897).Goldfain Albert, G. Cowell Lindsay & Smith Barry - 2012
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  8. VO: Vaccine Ontology.Yongqun He, Lindsay Cowell, Alexander D. Diehl, H. L. Mobley, Bjoern Peters, Alan Ruttenberg, Richard H. Scheuermann, Ryan R. Brinkman, Melanie Courtot, Chris Mungall, Barry Smith & Others - 2009 - In Barry Smith (ed.), ICBO 2009: Proceedings of the First International Conference on Biomedical Ontology. Buffalo: NCOR.
    Vaccine research, as well as the development, testing, clinical trials, and commercial uses of vaccines involve complex processes with various biological data that include gene and protein expression, analysis of molecular and cellular interactions, study of tissue and whole body responses, and extensive epidemiological modeling. Although many data resources are available to meet different aspects of vaccine needs, it remains a challenge how we are to standardize vaccine annotation, integrate data about varied vaccine types and resources, and support advanced vaccine (...)
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  9. Clonal complexes in biomedical ontologies.Albert Goldfain, Lindsay Cowell & Barry Smith - 2009 - In Barry Smith (ed.), ICBO 2009: Proceedings of the First International Conference on Biomedical Ontology. Buffalo: NCOR. pp. 168.
    An accurate classification of bacteria is essential for the proper identification of patient infections and subsequent treatment decisions. Multi-Locus Sequence Typing (MLST) is a genetic technique for bacterial classification. MLST classifications are used to cluster bacteria into clonal complexes. Importantly, clonal complexes can serve as a biological species concept for bacteria, facilitating an otherwise difficult taxonomic classification. In this paper, we argue for the inclusion of terms relating to clonal complexes in biomedical ontologies.
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  10.  93
    Coordinating virus research: The Virus Infectious Disease Ontology.John Beverley, Shane Babcock, Gustavo Carvalho, Lindsay G. Cowell, Sebastian Duesing, Yongqun He, Regina Hurley, Eric Merrell, Richard H. Scheuermann & Barry Smith - 2024 - PLoS ONE 1.
    The COVID-19 pandemic prompted immense work on the investigation of the SARS-CoV-2 virus. Rapid, accurate, and consistent interpretation of generated data is thereby of fundamental concern. Ontologies––structured, controlled, vocabularies––are designed to support consistency of interpretation, and thereby to prevent the development of data silos. This paper describes how ontologies are serving this purpose in the COVID-19 research domain, by following principles of the Open Biological and Biomedical Ontology (OBO) Foundry and by reusing existing ontologies such as the Infectious Disease Ontology (...)
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  11. An improved ontological representation of dendritic cells as a paradigm for all cell types.Anna Maria Masci, Cecilia N. Arighi, Alexander D. Diehl, Anne E. Liebermann, Chris Mungall, Richard H. Scheuermann, Barry Smith & Lindsay Cowell - 2009 - BMC Bioinformatics 10 (1):70.
  12. An improved ontological representation of dendritic cells as a paradigm for all cell types.Masci Anna Maria, N. Arighi Cecilia, D. Diehl Alexander, E. Lieberman Anne, Mungall Chris, H. Scheuermann Richard, Barry Smith & G. Cowell Lindsay - 2009 - BMC Bioinformatics 10 (1):70.
    The Cell Ontology (CL) is designed to provide a standardized representation of cell types for data annotation. Currently, the CL employs multiple is_a relations, defining cell types in terms of histological, functional, and lineage properties, and the majority of definitions are written with sufficient generality to hold across multiple species. This approach limits the CL’s utility for cross-species data integration. To address this problem, we developed a method for the ontological representation of cells and applied this method to develop a (...)
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  13. Coordinating Coronavirus Research: The COVID-19 Infectious Disease Ontology.John Beverley, Shane Babcock, Barry Smith, Yongqun He, Eric Merrell, Lindsay Cowell, Regina Hurley & Sebastian Duesing - 2022 - Proceedings of the International Conference on Biomedical Ontologies.
    The COVID-19 pandemic prompted immense work on the investigation of the SARS-CoV-2 virus. Ontologies – structured, controlled, vocabularies – are designed to support consistency of interpretation, and thereby to prevent the development of data silos. This paper describes how ontologies are serving this purpose in the virus research domain, following the principles of the Open Biological and Biomedical Ontology (OBO) Foundry and drawing on the resources of the Infectious Disease Ontology (IDO) Core. We report the development of the Virus Infectious (...)
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  14. How to Explain How-Possibly.Lindsay Brainard - 2020 - Philosophers' Imprint 20 (13):1-23.
    Explaining how something is possible is a familiar and epistemically important achievement in both science and ordinary life. But a satisfactory general account of how-possibly explanation has not yet been given. A crucial desideratum for a successful account is that it must differentiate a demonstration that something is possible from an explanation of how it is possible. In this paper, I offer an account of how-possibly explanation that fully captures this distinction. I motivate my account using two cases, one from (...)
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  15. In defense of doxastic blame.Lindsay Rettler - 2018 - Synthese 195 (5):2205-2226.
    In this paper I articulate a view of doxastic control that helps defend the legitimacy of our practice of blaming people for their beliefs. I distinguish between three types of doxastic control: intention-based, reason-based, and influence-based. First I argue that, although we lack direct intention-based control over our beliefs, such control is not necessary for legitimate doxastic blame. Second, I suggest that we distinguish two types of reason-responsiveness: sensitivity to reasons and appreciation of reasons. I argue that while both capacities (...)
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  16. The Curious Case of Uncurious Creation.Lindsay Brainard - forthcoming - Inquiry: An Interdisciplinary Journal of Philosophy.
    This paper seeks to answer the question: Can contemporary forms of artificial intelligence be creative? To answer this question, I consider three conditions that are commonly taken to be necessary for creativity. These are novelty, value, and agency. I argue that while contemporary AI models may have a claim to novelty and value, they cannot satisfy the kind of agency condition required for creativity. From this discussion, a new condition for creativity emerges. Creativity requires curiosity, a motivation to pursue epistemic (...)
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  17. Remembering Socrates: philosophical essays.Lindsay Judson & Vassilis Karasmanis (eds.) - 2006 - New York: Oxford University Press.
    Lindsay Judson and Vassilis Karasmanis present a selection of philosophical papers by an outstanding international team of scholars, assessing the legacy and continuing relevance of Socrates's thought 2,400 years after his death. The topics of the papers include Socratic method; the notion of definition; Socrates's intellectualist conception of ethics; famous arguments in the Euthyphro and Crito; and aspects of the later portrayal and reception of Socrates as a philosophical and ethical exemplar, by Plato, the Sceptics, and in the early (...)
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  18. Epistemic Duty and Implicit Bias.Lindsay Rettler & Bradley Rettler - 2020 - In Kevin McCain & Scott Stapleford (eds.), Epistemic Duties: New Arguments, New Angles. Routledge. pp. 125-145.
    In this chapter, we explore whether agents have an epistemic duty to eradicate implicit bias. Recent research shows that implicit biases are widespread and they have a wide variety of epistemic effects on our doxastic attitudes. First, we offer some examples and features of implicit biases. Second, we clarify what it means to have an epistemic duty, and discuss the kind of epistemic duties we might have regarding implicit bias. Third, we argue that we have an epistemic duty to eradicate (...)
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  19.  61
    A treatise of human nature.David Hume & A. D. Lindsay - 2003 - Mineola, N.Y.: Dover Publications. Edited by Ernest Campbell Mossner.
    One of Hume's most well-known works and a masterpiece of philosophy, A Treatise of Human Nature is indubitably worth taking the time to read.
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  20. “Divine Aseity and Abstract Objects”.Lindsay Cleveland - 2021 - In James Arcadi & James T. Turner (eds.), The T&T Clark Handbook of Analytic Theology. New York: T&T Clark/Bloomsbury. pp. 165-179.
     
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  21.  27
    Crime and Punishment.Lindsay Farmer - 2020 - Criminal Law and Philosophy 14 (2):289-298.
    This is a review essay of Lagasnerie, Judge and Punish and Fassin, The Will to Punish. It explores the way that these two books challenge conventional thinking about the relationship between crime and punishment.
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  22. Total colour blindness: an introduction.Lindsay T. Sharpe & Knut Nordby - 1990 - In R. F. Hess, L. T. Sharpe & K. Nordby (eds.), Night Vision: Basic, Clinical and Applied Aspects. Cambridge University Press. pp. 253--289.
     
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  23.  86
    Ecological restoration and environmental ethics.Mark Cowell - 1993 - Environmental Ethics 15 (1):19-32.
    Restoration ecology has recently emerged as a branch of scientific ecology that challenges many of the traditional tenets of environmentalism. Because the restoration of ecosystems, “applied ecology,” has the potential to advance theoretical understanding to such an extent that scientists can extensively manipulate the environment, it encourages increasingly active human participation within ecosystemsand could inhibit the preservation of areas from human influences. Despite the environmentally dangerous possibilities that this form of science and technology present, restoration offers an attractive alternative for (...)
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  24. Faith, Belief, and Control.Lindsay Rettler - 2018 - American Philosophical Quarterly 55 (1):95-109.
    In this paper, I solve a puzzle generated by three conflicting claims about the relationship between faith, belief, and control: according to the Identity Thesis, faith is a type of belief, and according to Fideistic Voluntarism, we sometimes have control over whether or not we have faith, but according to Doxastic Involuntarism, we never have control over what we believe. To solve the puzzle, I argue that the Identity Thesis is true, but that either Fideistic Voluntarism or Doxastic Voluntarism is (...)
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  25.  4
    Relationships and Reasons for Belief.Lindsay Crawford - 2020 - In Sebastian Schmidt & Gerhard Ernst (eds.), The Ethics of Belief and Beyond: Understanding Mental Normativity. Abingdon, UK: Routledge. pp. 87-108.
    The central dispute between evidentialists and pragmatists about reasons for belief concerns whether or not non-evidential considerations can be reasons for belief. In recent work, some pragmatists about reasons for belief have made their case for pragmatism by appealing, in part, to a broad range of cases in which facts about one’s relationships with significant others (friends, romantic partners, and the like) appear to give one non-evidential reasons to have beliefs skewed in their favor. This chapter explores whether and how (...)
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  26.  12
    Threats to military professionalism: international perspectives.Douglas Lindsay & Jeff Stouffer (eds.) - 2012 - Kingston, Ont.: Canadian Defence Academy Press.
    South African Military Professionalism: Some Critical Observations and Threats -- Threats to Professionalism in the United States Military -- Higher Education and the Profession of Arms: Explaining the Logic -- Military Professionalism -- An Organizational Challenge by Itself -- The Challenge of Maintaining Military Professionalism in the Face of Transformation: The Indonesian Army Experience -- Threats and Opportunities for Military Professionalism from Social Media -- The Profession of Arms and the Promotion of Ethics: The profession of Arms and the Challenge (...)
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  27.  10
    Genotechnology: Three challenges to risk legitimation.Lindsay Prior, Peter Glasner & Rutft McNally - 2000 - In Barbara Adam, Ulrich Beck & Joost van Loon (eds.), The risk society and beyond: critical issues for social theory. Thousand Oaks, Calif.: SAGE. pp. 105--21.
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  28. Graduate Socialization in the Responsible Conduct of Research: A National Survey on the Research Ethics Training Experiences of Psychology Doctoral Students.Lindsay G. Feldman, Adam L. Fried & Celia B. Fisher - 2009 - Ethics and Behavior 19 (6):496-518.
    Little is known about the mechanisms by which psychology graduate programs transmit responsible conduct of research (RCR) values. A national sample of 968 current students and recent graduates of mission-diverse doctoral psychology programs completed a Web-based survey on their research ethics challenges, perceptions of RCR mentoring and department climate, whether they were prepared to conduct research responsibly, and whether they believed psychology as a discipline promotes scientific integrity. Research experience, mentor RCR instruction and modeling, and department RCR policies predicted student (...)
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  29.  42
    Priority setting in health care: Lessons from the experiences of eight countries.Lindsay M. Sabik & Reidar K. Lie - unknown
    All health care systems face problems of justice and efficiency related to setting priorities for allocating a limited pool of resources to a population. Because many of the central issues are the same in all systems, the United States and other countries can learn from the successes and failures of countries that have explicitly addressed the question of health care priorities. We review explicit priority setting efforts in Norway, Sweden, Israel, the Netherlands, Denmark, New Zealand, the United Kingdom and the (...)
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  30. John Lloyd Ackrill 1921–2007.Lindsay Judson - 2009 - In Judson Lindsay (ed.), Proceedings of the British Academy, Volume 161, Biographical Memoirs of Fellows, VIII. pp. 3-16.
     
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  31. The evening(s) of our day : Melville, McCarthy, and the Anthropocene's double apocalypse.Lindsay Atnip - 2023 - In Jakub Kowalewski (ed.), The Environmental Apocalypse: Interdisciplinary Reflections on the Climate Crisis.
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  32.  19
    'Should I Stay or Should I Go?': Applying Ethical Principles to Practice.Aylssa Cowel - 2007 - Ethics and Social Welfare 1 (2):224-229.
  33.  8
    A philosophical system of theistic idealism.James Lindsay - 1917 - [n.p.]: Wentworth Press.
    This work has been selected by scholars as being culturally important, and is part of the knowledge base of civilization as we know it. This work was reproduced from the original artifact, and remains as true to the original work as possible. Therefore, you will see the original copyright references, library stamps (as most of these works have been housed in our most important libraries around the world), and other notations in the work. This work is in the public domain (...)
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  34.  23
    Creative individualism: the democratic vision of C.B. Macpherson.Peter Lindsay - 1996 - Albany: State University of New York Press.
    The result is a vision of creative individualism for the post-communist world that combines Macpherson's insistence on social justice with the lessons learned ...
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  35.  57
    My Bioethics Journey.Lindsay Zausmer - 2012 - Cambridge Quarterly of Healthcare Ethics 21 (1):116-118.
    The patient, an 89-year-old man—let’s call him Mr. Smith—had no known relatives, friends, or advance directives. He was a bright man and served as a scientist in the Reagan administration.
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  36. Plato: the father of western philosophy.Lindsay Zoubek - 2016 - New York: Rosen Publishing.
    Early life in Athens -- Plato's education in philosophy -- A departure from Socrates -- The Academy and Plato's last teachings.
     
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  37.  55
    Convergent Neural Correlates of Empathy and Anxiety During Socioemotional Processing.Lindsay K. Knight, Teodora Stoica, Nicholas D. Fogleman & Brendan E. Depue - 2019 - Frontiers in Human Neuroscience 13.
  38. Believing the best: on doxastic partiality in friendship.Lindsay Crawford - 2017 - Synthese 196 (4):1575-1593.
    Some philosophers argue that friendship can normatively require us to have certain beliefs about our friends that epistemic norms would prohibit. On this view, we ought to exhibit some degree of doxastic partiality toward our friends, by having certain generally favorable beliefs and doxastic dispositions that concern our friends that we would not have concerning relevantly similar non-friends. Can friendship genuinely make these normative demands on our beliefs, in ways that would conflict with what we epistemically ought to believe? On (...)
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  39.  30
    Language as Description, Indication, and Depiction.Lindsay Ferrara & Gabrielle Hodge - 2018 - Frontiers in Psychology 9.
  40. To Thine Own Self Be True? Employees’ Judgments of the Authenticity of Their Organization’s Corporate Social Responsibility Program.Lindsay McShane & Peggy Cunningham - 2012 - Journal of Business Ethics 108 (1):81-100.
    Despite recognizing the importance of developing authentic corporate social responsibility (CSR) programs, noticeably absent from the literature is consideration for how employees distinguish between authentic and inauthentic CSR programs. This is somewhat surprising given that employees are essentially the face of their organization and are largely expected to act as ambassadors for the organization’s CSR program (Collier and Esteban in Bus Ethics 16:19–33, 2007 ). The current research, by conducting depth interviews with employees, builds a better understanding of how employees (...)
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  41.  11
    Ethical Perspectives for Caribbean Business.Noel M. Cowell (ed.) - 2007 - Arawak.
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  42.  6
    Own Yourself! Reflexive Possession and Its Discontents in Beloved (1987).Lindsay O’Connor Stern - 2023 - Law and Critique 35 (1):73-91.
    This article discusses the representation of law in Toni Morrison’s Beloved in the context of legal philosophy. Beloved’s contribution to the legal humanities has been described in terms of the contrast Morrison dramatizes between two visions of law: the violence of human chattel slavery embodied by the titular ghost, Beloved, and the communal act of solidarity that exorcizes her from her mother’s house. Yet this characterization neglects the associations Morrison draws in Beloved and in her metacommentary between the ghost and (...)
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  43.  68
    Suspending Judgment is Something You Do.Lindsay Crawford - 2022 - Episteme 19 (4):561-577.
    What is it to suspend judgment about whether p? Much of the recent work on the nature and normative profile of suspending judgment aims to analyze it as a kind of doxastic attitude. On some of these accounts, suspending judgment about whether p partly consists in taking up a certain higher-order belief about one's deficient epistemic position with respect to whether p. On others, suspending judgment about whether p consists in taking up a sui generis attitude, one that takes the (...)
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  44. Thinking About Inequality: Personal Judgment and Income Distributions.Yoram Amiel & Frank Cowell - 1999 - Cambridge University Press.
    What is inequality? In the late 1990s there was an explosion of interest in the subject that yielded a substantial body of formal tools and results for income-distribution analysis. Nearly all of this is founded on a small set of core assumptions - such as the Principle of Transfers, scale independence, the population principle∑ - that are used to give meaning to specific concepts of inequality measurement, inequality ranking and, indeed, to inequality itself. But does the standard axiomatic structure coincide (...)
     
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  45.  9
    Modern Science and Its Philosophy.R. B. Lindsay - 1951 - Philosophy of Science 18 (1):87-88.
  46.  18
    Making the Modern Criminal Law: Criminalization and Civil Order.Lindsay Farmer - 2016 - Oxford University Press.
    The fifth book in the series offers an historical and conceptual account of the criminal law, as it has developed in England and spread to common law jurisdictions around the world. It traces how and why criminal law has come to be accorded with a central role in securing civil order in modernity, and justifies who and what should be treated as criminal under the law. Farmer argues that the emergence of the modern state in which criminal law is recognized (...)
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  47.  14
    Moral distress to moral success: Strategies to decrease moral distress.Lindsay R. Semler - 2023 - Nursing Ethics 30 (1):58-70.
    Background: Moral distress, which is especially high in critical care nurses, has significant negative implications for nurses, patients, organizations, and healthcare as a whole. Aim: A moral distress workshop and follow-up activities were implemented in an intensive care unit in order to decrease levels of moral distress and increase nurses’ perceived comfort and confidence in ethical decision-making. Design: A quality improvement (QI) initiative was conducted using a pre- and post-intervention design. The program consisted of a four-hour interactive workshop, followed by (...)
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  48. Defending evo‐devo: A response to Hoekstra and Coyne.Lindsay R. Craig - 2009 - Philosophy of Science 76 (3):335-344.
    The study of evolutionary developmental biology (“evo‐devo”) has recently experienced a dramatic surge in popularity among researchers and theorists concerned with evolution. However, some biologists and philosophers remain skeptical of the claims of evo‐devo. This paper discusses and responds to the recent high profile criticisms of evo‐devo presented by biologists Hopi E. Hoekstra and Jerry A. Coyne. I argue that their objections are unconvincing. Indeed, empirical research supports the main tenets of evo‐devo, including the claim that morphological evolution is the (...)
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  49.  47
    The So-Called Extended Synthesis and Population Genetics.Lindsay R. Craig - 2010 - Biological Theory 5 (2):117-123.
    In recent years, several prominent biologists have pointed to the relatively new field of evolutionary developmental biology (EvoDevo) as evidence of an Extended Synthesis in evolutionary biology. More particularly, these biologists claim that theoretical and empirical EvoDevo research is extending the Modern Synthesis framework of evolutionary theory through investigation of evolutionarily important concepts that are not part of the framework developed during the 20th century. To describe the current changes in evolutionary biology as an Extended Synthesis, however, is incorrect. Through (...)
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  50.  55
    The Philosophy of Pornography: Contemporary Perspectives.Lindsay Coleman & Jacob M. Held (eds.) - 2014 - Rowman & Littlefield Publishers.
    Even as it skirts mainstream contemporary culture, pornography remains a social taboo; there still exist strong biases both in favor and against it. With chapters addressing imagination, gender, power relationships, truth claims, aesthetics, and both pro and anti-porn slants, this book presents a balanced view of pornography in modern society.
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