The autopoietic theory and the enactive approach are two theoretical streams that, in spite of their historical link and conceptual affinities, offer very different views on the nature of living beings. In this paper, we compare these views and evaluate, in an exploratory way, their respective degrees of internal coherence. Focusing the analyses on certain key notions such as autonomy and organizational closure, we argue that while the autopoietic theory manages to elaborate an internally consistent conception of living (...) beings, the enactive approach presents an internal tension regarding its characterization of living beings as intentional systems directed at the environment. (shrink)

There is contrast to the belief that all energy and matter came into existence after the Big Bang. If we wish to understand the way the Greeks and other philosophers view our environment, we need to study the data that was collected by them. This book sees our portrayal of reality as having its departure point in concrete systems by which means of conceptual systems result in abstracted systems. This data must be sorted and information must now (...) be surveyed, structured, and analysed to find qualities and connections between the different aspects systems thinking. This has led to the theory for 'Living Systems'. It gives examples of applications which a basis for further studies of systems can be formed. The Internet now provides a major advantage to the retrieval of statistical information and opens a means for the future exploration and verification of how systems work. (shrink)

The external worlds do not objectively exist for living systems because these worlds are unknown from within systems. How can they escape solipsism to survive and reproduce as open systems? Living systems must construct their hypothetical models of external entities in the form of their internal structures to determine how to change states (i.e., sense and act) appropriately to achieve a favorable probability distribution of the events they experience. The model construction involves the generation (...) of symbols referring to external entities. This paper attempts to provide a new view that living systems are an inverse-causality operator. Inverse causality (IC) is an algorithmic process that generates symbols referring to external reality states based on a given data sequence. For applying this logical model involving if–then entailments to living systems involving material interactions, the cognizers-system model was employed to represent the IC process; here, living systems were modeled as a subject of cognition and action. A focal subject system is described as a cognizer composed of sub-cognizers, such as a sensor, a signal transducer, and an effector. Analysis using this model proposes that living systems invented the “measurers” for conducting IC operations through their evolution. (shrink)

It is proposed that the Darwinian theoretical approach and account of living systems has not yet been clearly given. A first approximation to this is attempted, focussing on behavior in evolving environments. A theoretical terminology is defined emphasizing the mutuality of organism and environment and the existence of biologically theoretical entities.

The question which is never entirely resolved is: what is life? Biology, claims to stand for the study of life and living things, yet we would say that it cannot make a thoroughly clear distinction between living and non living, except in some very obvious cases. There are textbook definitions, of course, based on certain notable properties such as the ability to metabolize or reproduce, but these are arbitrary. If we are familiar with the characteristics of a (...) particular animal or plant, we know enough to be able to pronounce that it is dead when certain internal and external behaviours are no longer evident. Even this has difficulties - such as revealed in the arguments about whether to switch off a human life support system or not. When you find a squishy object on the seashore, can you be sure if it is alive or dead - or never living? The same dilemma confronts medical scientists and microbiologists trying to decide, for example, whether viruses are living, or quasi living, or intermittently living, or what. (shrink)

Biology is in a unique position among the natural sciences. It is not simply complex physics and chemistry, for living organisms have a psychological as well as a physical side. Even as physical systems their character is highly special, largely because their material substance is continually changing; perhaps it was from them that Heraclitus derived his idea that all is flow. The comparison with vortexes and candle flames is an old one. Wilhelm Ostwald included living organisms in (...) his class of “stationary systems”: they represent not a static but a kinetic equilibrium, what we now often call a “steady state”; there is a balance of constitutive and dissipative processes. Materials and energy converge to the living center, undergo there characteristic transformations, among which complex chemical and structural syntheses are conspicuous, and are again distributed at random to the surroundings. The living organism is thus the seat of a special type of physical and chemical activity found nowhere else in nature, and it is significant that this is associated with psychical activity—demonstrably in the higher organisms, by implication in the lower. (shrink)

If the problem of the origin of life is conceptualized as a process of emergence of biochemistry from proto-biochemistry, which in turn emerged from the organic chemistry and geochemistry of primitive earth, then the resources of the new sciences of complex systems dynamics can provide a more robust conceptual framework within which to explore the possible pathways of chemical complexification leading to living systems and biosemiosis. In such a view the emergence of life, and concomitantly of natural (...) selection and biosemiosis, is the result of deep natural laws (the outlines of which we are only beginning to perceive) and reflects a degree of holism in those systems that led to life. Further, such an approach may lead to the development of a more general theory of biology and of natural organization, one informed by semiotic concepts. (shrink)

Ranging from miniaturized biological robots to organoids, multi-cellular engineered living systems (M-CELS) pose complex ethical and societal challenges. Some of these challenges, such as how to best distribute risks and benefits, are likely to arise in the development of any new technology. Other challenges arise specifically because of the particular characteristics of M-CELS. For example, as an engineered living system becomes increasingly complex, it may provoke societal debate about its moral considerability, perhaps necessitating protection from harm or (...) recognition of positive moral and legal rights, particularly if derived from cells of human origin. The use of emergence-based principles in M-CELS development may also create unique challenges, making the technology difficult to fully control or predict in the laboratory as well as in applied medical or environmental settings. In response to these challenges, we argue that the M-CELS community has an obligation to systematically address the ethical and societal aspects of research and to seek input from and accountability to a broad range of stakeholders and publics. As a newly developing field, M-CELS has a significant opportunity to integrate ethically responsible norms and standards into its research and development practices from the start. With the aim of seizing this opportunity, we identify two general kinds of salient ethical issues arising from M-CELS research, and then present a set of commitments to and strategies for addressing these issues. If adopted, these commitments and strategies would help define M-CELS as not only an innovative field, but also as a model for responsible research and engineering. (shrink)

Meaning has traditionally been regarded as a problem for philosophers and psychologists. Advances in cognitive science since the early 1960s, however, broadened discussions of meaning, or more technically, the semantics of perceptions, representations, and/or actions, into biology and computer science. Here, we review the notion of “meaning” as it applies to living systems, and argue that the question of how living systems create meaning unifies the biological and cognitive sciences across both organizational and temporal scales.

Living systems are characterized by unique properties that make them resistant to the ``information-processingperspective'' of traditional cognitive science.This paper details those unique properties andoffers a new theoretical framework forunderstanding the behavior of living systems.This framework leans heavily on ideas fromgeneral systems theory (specifically Bateson'sinteractionist perspective), semiotics, andMerleau-Ponty's phenomenology. The benefits ofusing this framework are illustrated withexamples from two different domains: immunologyand verbal interaction.

The unprecedented prowess of measurement techniques provides a detailed, multi‐scale look into the depths of living systems. Understanding these avalanches of high‐dimensional data—by distilling underlying principles and mechanisms—necessitates dimensional reduction. We propose that living systems achieve exquisite dimensional reduction, originating from their capacity to learn, through evolution and phenotypic plasticity, the relevant aspects of a non‐random, smooth physical reality. We explain how geometric insights by mathematicians allow one to identify these genuine hallmarks of life and distinguish (...) them from universal properties of generic data sets. We illustrate these principles in a concrete example of protein evolution, suggesting a simple general recipe that can be applied to understand other biological systems. (shrink)

Millers Living Systems Theory (LST) is known to be very comprehensive. It comprises eight nested hierarchical levels. It also includes twenty critical subsystems. While Millers approach has been analyzed and applied in great detail, some problematic features remain, requiring further explication. One of these is the relationship between reduction and emergence in LST. There are at least four relevant possibilities. One is that LST exhibits neither clear reductionism nor emergence, but is essentially neutral in this regard. Another is (...) that the apparent comprehensiveness of LST is illusory, as the approach remains vulnerable to reduction that could ultimately reduce it to a shadow of its present self. The charge of reductionism has been made by critics leading Miller to defend this theory vehemently as nonreductionist in nature. A third possibility is that LST is not reductionist, but is in fact an emergent theory. Miller makes this claim quite strongly. A fourth possibility, and in some ways the most analytically problematic, is that LST exhibits evidence of both reductionism and emergence simultaneously. Some critics might see this fourth situation as evidence of a troubling paradox or anomaly that must be resolved before further progress can be made in the explication and application of LST. The purpose of the paper is to remove this apparent anomaly. The paper removes this anomaly by differentiating between new-variable emergence and transformational emergence. No concrete evidence is found to contradict Milers claim of emergence in LST, and thus no true anomaly exists. (shrink)

The philosophical vision of the world and the consequent methodology behind the book are clarified. The perspective used is the systemic one, but since today this term has assumed a wide and diversified meaning in the literature, this introduction will clarify the specific meaning of our approach, starting from the meaning of the term "system". Our idea of system is based on three key assertions that may seem contradictory, but are necessary and complementary to its definition. In particular, we considered (...) the usual idea that the system is more and less than the sum of its juxtaposed parts, highlighting the role of emergencies and constraints. In our idea of a system, however, we must consider a third fundamental characteristic: its dynamism, the dual nature of the system as an entity and as a process, its role as a "dynamic entity". Afterwards, the holistic and reductionist approaches were analysed in detail, and both the specific merits and the fact that these two opposing worldviews, considered individually, cannot give a complete and balanced description of reality, were taken into account. For us, only the systemic approach provides a balanced description of both the parts and the whole and must, therefore, be preferred. Finally, the differences between our approach and the approaches mentioned above have been considered in detail in this introduction. (shrink)

The autocell proposal for the emergence of life and natural selection through the interaction of two reciprocally coupled self-organizing processes specifically provides a protein-first model for the origin of life that can be explored by computer simulations and experiment. Beyond the specific proposal it can be considered more generally as a thought experiment in which the principles deduced for the autocell could apply to other possible detailed chemical scenarios of catalytic polymers and protometabolism, including living systems emerging within (...) membranelike barriers. The autocell model allows for the analysis of the emergence of not only agency and purpose but also of interpretation and semiosis as true living systems arise. (shrink)

Any description of the emergence and evolution of different types of meaning processes (semiosis, sensu C.S.Peirce) in living systems must be supported by a theoretical framework which makes it possible to understand the nature and dynamics of such processes. Here we propose that the emergence of semiosis of different kinds can be understood as resulting from fundamental interactions in a triadically-organized hierarchical process. To grasp these interactions, we develop a model grounded on Stanley Salthe's hierarchical structuralism. This model (...) can be applied to establish, in a general sense, a set of theoretical constraints for explaining the instantiation of different kinds of meaning processes (iconic, indexical, symbolic) in semiotic systems. We use it to model a semiotic process in the immune system, namely, B-cell activation, in order to offer insights into the heuristic role it can play in the development of explanations for specific semiotic processes. (shrink)

The stories in this book offer strategies and practices for applying systems thinking in education to unleash human energy for the journey of continuous improvement.

The concept of complexity has become very important in theoretical biology. It is a many faceted concept and too new and ill defined to have a universally accepted meaning. This review examines the development of this concept from the point of view of its usefulness as a criteria for the study of living systems to see what it has to offer as a new approach. In particular, one definition of complexity has been put forth which has the necessary (...) precision and rigor to be considered as a useful categorization of systems, especially as it pertains to those we call living. This definition, due to Robert Rosen, has been developed in a number of works and involves some deep new concepts about the way we view systems. In particular, it focuses on the way we view the world and actually practice science through the use of the modelling relation. This mathematical object models the process by which we assign meaning to the world we perceive. By using the modelling relation, it is possible to identify the subjective nature of our practices and deal with this issue explicitly. By so doing, it becomes clear that our notion of complexity and especially its most popular manifestations, is in large part a product of the historical processes which lead to the present state of scientific epistemology. In particular, it is a reaction to the reductionist/mechanistic view of nature which can be termed the Newtonian Paradigm. This approach to epistemology has dominated for so long that its use as a model has become implicit in most of what we do in and out of science. The alternative to this approach is examined and related to the special definition of complexity given by Rosen. Some historical examples are used to emphasize the dependence of our view of what is complex in a popular sense on the ever changing state of our knowledge. The role of some popular concepts such as chaotic dynamics are examined in this context. The fields of artificial life and related areas are also viewed from the perspective of this rigorous view of complexity and found lacking. The notion that in some way life exists at the edge of chaos is examined from the perspective of the second law of thermodynamics given by Schneider and Kay. Finally, the causal elements in complex systems are explored in relation to complexity. Rosen has shown that a clear difference in causal relations exists between complex and simple systems and that this difference leads to a uniquely useful definition of what we mean by living. Rosen makes it very clear that the class of systems which are complex is a much larger class than those which we call living. For that reason, the focus of this review will be on complexity as a stepping stone towards the deeper question of what makes a system alive. (shrink)

The informational nature of biological organization, at levels from the genetic and epigenetic to the cognitive and linguistic.

This volume gathers scholars from ecology, biochemistry, evolutionary biology, cognitive science, anthropology and philosophy to discuss how Gregory Bateson's thinking might lead to a reframing of central problems in modern science.

Minimal genetic pre-formationism is defended, in that primacy is ascribed to DNA in the structuring of molecules through molecular codes. This together with the importance of such codes for stability and variation in living systems makes DNA categorically different from other causal factors. It is argued that post-transcriptional and post-translational processing in protein synthesis does not rob DNA of this structuring role. Notions of structuring causal powers that may vary in degree, of arbitrary molecular codes that are more (...) or less realized, of partial templating and of genetic information as a subspecies of mechanistic information are brought in to support this and to rival causal and semantic notions of information. It is concluded that the primacy of genes in their structuring of molecules goes together with parity between genes and non-genetic causal factors in regulation of living systems. This is seen to hold independently of the radical reconceptualization of organism cum environment that has been suggested in developmental systems theory. (shrink)

This article considers naturalistic analyses of the concepts of health and disease in light of the possibility of constructing novel living systems. The article begins by introducing the vision of synthetic biology as the application of engineering principles to the construction of biological systems, the main analyses of the concepts of health and disease, and the standard theories of function in artefacts and organisms. The article then suggests that reflection on the possibility of artefactual organisms amounts to (...) a challenge to the functional theories of health and disease proposed by Wakefield and Boorse. More specifically, Wakefield and Boorse's theories are reconstructed as responses to a dilemma concerning how to allow for the ascription of health and disease to artefactual organisms without at the same time opening up the possibility of diseased nonliving artefacts such as cars and computers. It is argued that neither response will enable us to ascribe health and disease to artefactual organisms, because both theories, in order to rule out the possibility of ascribing health and disease to nonliving artefacts, make such ascriptions conditional on having a natural-selection history or being part of a species which has been designed by evolution. (shrink)

What is reductionism? -- Who is reading the book of life? -- Genetics : from grammar to meaning making -- A point for thought : why are organisms irreducible? -- A point for thought : does the genetic system include a meta-language? -- Immunology : from soldiers to housewives -- A point for thought : immune specificity and Brancusi's kiss -- A point for thought : reflections on the immune self -- Meaning making in language and biology -- A point (...) for thought : meaning : bridging the gap between physics and semantics -- The rest is silence -- The polysemy of the sign : a quantum lesson -- Recursive-hierarchy : a lesson from the tardigrade -- Context and memory : a lesson from funes the memorious -- Transgradience : a lesson from Bakhtin -- The poetry of living. (shrink)

Abstract.Growing interest in the origin of life, the physical foundations of biological theory, and the evolution of animal social systems has led to increasing efforts to understand the processes by which elements or living systems at one level of organizational complexity combine to form stable systems of higher order. J. Bronowski saw the need to extend or reformulate evolutionary theory to deal with the hierarchy problem and to account for the evolution of systems of “stratified (...) stability.” The hierarchy problem has become a matter of great interest also in nonequilibrium thermodynamic theory.An effort is made here to develop an abstract, phenomenological model, based on the laws of thermodynamics, to account for the origin and hierarchical evolution of living systems. It is argued that the principle of minimum entropy production, developed by I. Prigogine, applies generally to all thermodynamic systems and processes and is implicit in an extended and more complete formulation of the second law of thermodynamics. From this are derived a thermodynamic criterion and a principle of thermodynamic selection governing the formation of stable systems of “elements” of various levels of organization. Thermodynamic selection gives rise to the creation of “elements” having increasingly “open” characteristic structures which may combine spontaneously to form “social” or crystalline systems capable of growing and reproducing themselves through processes of fissioning or budding. Such simple, self‐reproducing systems are capable of evolving by natural selection, which is seen to be a special case of the more general process of thermodynamic selection. The principle of natural selection, thus formulated, has the character of a fundamental physical law. Self‐reproducing systems with suitably open hereditary programs may combine to form stable social systems, which may grow and reproduce as a unit. In this way self‐reproducing systems of increasing hierarchical order, size, and organizational complexity may evolve through processes of thermodynamic (natural) selection. Some implications of this open‐ended model and opportunities for testing its empirical and theoretical utility are explored. (shrink)

With the aid of new technologies, science has found creative ways to investigate nature. Through the use of a highly sensitive, low-noise, cooled camera, previously applied to exploring dark sky, scientific laboratories around the world have been looking at the weak emission of light from cells in a living organism. Biophoton emission, as so-called by Fritz Albert Popp, was introduced to science in the 1920s by the Russian embryologist Alexander Gurwitsh, receiving the name of mitogenetic rays. Since 1974, systematic (...) research carried out by Fritz Albert Popp and his colleagues in many parts of the world has been focused on conducting experiments and working towards a biophoton theory to inform us about its properties. One of the main hypotheses is that biophoton plays an important biological function and due to evidence of coherence of its light, i.e. a high degree of order with an extremely stable intensity (Bischof 2005), biophoton is supposed to operate as a biological laser, able to manage a network of information in the organism as well as to form electromagnetic field patterns. Interactive art based on digital technologies uses numerical data to produce interactions between our body and lit pixels on the screen. Maybe, with the correct tools and equations, data from subtle fields of energy in living systems could be used to connect different systems of information, conjugating micro and macro levels of energy. This paper intends to examine biophoton research as a possible model to interactive art and consider the way it could lead to new forms for perception and consciousness. (shrink)

We develop a semiotic scheme of time, in which time precipitates from the repeated succession of punctuating the progressive tense by the perfect tense. The underlying principle is communication among local participants. Time can thus be seen as a meaning-making, semiotic system in which different time codes are delineated, each having its own grammar and timekeeping. The four time codes discussed are the following: the subjective time having tense, the objective time without tense, the static time without timekeeping, and the (...) inter-subjective time of the E-series. Living organisms adopt a time code called the E-series, which emerges through the local synchronization among organisms or parts of organisms. The inter-subjective time is a new theoretical dimension resulting from the time-aligning activities of interacting agents. Such synchronization in natural settings consists of incessant mutual corrections and adjustments to one’s own punctuation, which is then constantly updated. Unlike the third-person observer keeping the objective time while sitting outside a clock, the second-person negotiators participate in forming the E-series time by punctuating and updating the interface through which different tenses meet at the moment of “now.” Although physics allows physicists to be the only interpreters, the semiotic perspective upends the physical perspective by letting local participants be involved in the interpretation of their mutual negotiations to precipitate that which is called time. (shrink)

Anticipatory acts or predictive behavior are prerequisites for living organisms to sustain their survival when escaping from a predator, catching prey, or schooling. For example, catching prey requires that the predator perform some procedures that are equivalent to estimating the directional movement of the prey, its speed and its distance relative to the predator. Underlying these procedures is time experience, which does not adhere to man-made mechanical clocks. Living organisms keep time based on the local activities of each (...) participant and form ecological clocks together. The timekeeping of ecological clocks has been called E-series time, which is interactive in character and consists of mutual alignment of timing that is co-adjusted to each other’s movements and rhythms. A main objective of our current work is to illustrate how E-series time is used for flows of anticipatory acts. To explain such predictive moves and their efforts based on how the perspective of the immediate future affects the present, we resort to the organismic activity of revising the preceding acts in retrospect and semiotic scaffolding that extends beyond simple linear causality. Special attention is paid to the construction of the notion of retrocausal scaffolding, which is a series of dialogical punctuations or mutual coordination of rhythms for the joint production of the present moment of now. Retrocausal scaffolding is synonymous with negotiated anticipation, which is a semiotic/communicative account of revising the preceding acts in the present moment. (shrink)

In recent months, Covid‐19 has devastated African American communities across the nation, and a Minneapolis police officer murdered George Floyd. The agents of death may be novel, but the phenomena of long‐standing epidemics of premature black death and of police violence are not. This essay argues that racial health and health care disparities, rooted as they are in systemic injustice, ought to carry far more weight in clinical ethics than they generally do. In particular, this essay examines palliative and end‐of‐life (...) care for African Americans, highlighting the ways in which American medicine, like American society, has breached trust. In the experience of many African American patients struggling against terminal illness, health care providers have denied them a say in their own medical decision‐making. In the midst of the Covid‐19 pandemic, African Americans have once again been denied a say with regard to the rationing of scarce medical resources such as ventilators, in that dominant and ostensibly race‐neutral algorithms sacrifice black lives. Is there such thing as a “good” or “dignified” death when African Americans are dying not merely of Covid‐19 but of structural racism? (shrink)

Building on the original formulation of the autopoietic theory (AT), extended enactivism argues that living beings are autopoietic systems that extend beyond the spatial boundaries of the organism. In this article, we argue that extended enactivism, despite having some basis in AT’s original formulation, mistakes AT’s definition of living beings as autopoietic entities. We offer, as a reply to this interpretation, a more embodied reformulation of autopoiesis, which we think is necessary to counterbalance the (excessively) disembodied spirit (...) of AT’s original formulation. The article aims to clarify and correct what we take to be a misinterpretation of AT as a research program. AT, contrary to what some enactivists seem to believe, did not (and does not) intend to motivate an extended conception of living beings. AT’s primary purpose, we argue, was (and is) to provide a universal individuation criterion for living beings, these understood as discrete bodies that are embedded in, but not constituted by, the environment that surrounds them. However, by giving a more explicitly embodied definition of living beings, AT can rectify and accommodate, so we argue, the enactive extended interpretation of autopoiesis, showing that although living beings do not extend beyond their boundaries as autopoietic unities, they do form part, in normal conditions, of broader autopoietic systems that include the environment. (shrink)

We propose a framework for analyzing the development, operation and failure to survive of all things, living, non-living or organized groupings. This framework is a sequence of developments that improve survival capability. Framework processes range from origination of any entity/system, to the development of increased survival capability and development of life-forms and organizations that use intelligence. This work deals with a series of developmental changes that arise from the uncovering of emergent properties. The framework is intended to be (...) general, but we see a potential to apply it to scientific topics such as the exploration of the origin of life or the search for life beyond Earth, and to understand some biological issues in evolution and symbiosis, and also to apply to social systems that do not seem to be operating well, to determine their problems and correct them. (shrink)