Results for 'Genomes'

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  1.  59
    Ethical Guidelines for Human Embryonic Stem Cell Research (A Recommended Manuscript).Chinese National Human Genome Center at Shanghai Ethics Committee - 2004 - Kennedy Institute of Ethics Journal 14 (1):47-54.
    In lieu of an abstract, here is a brief excerpt of the content:Kennedy Institute of Ethics Journal 14.1 (2004) 47-54 [Access article in PDF] Ethical Guidelines for Human Embryonic Stem Cell Research*(A Recommended Manuscript) Adopted on 16 October 2001Revised on 20 August 2002 Ethics Committee of the Chinese National Human Genome Center at Shanghai, Shanghai 201203 Human embryonic stem cell (ES) research is a great project in the frontier of biomedical science for the twenty-first century. Be- cause the research involves (...)
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  2.  6
    The UK’s 100,000 Genomes Project: manifesting policymakers’ expectations.Gabrielle Natalie Samuel & Bobbie Farsides - 2017 - New Genetics and Society 36 (4):336-353.
    The UK’s 100,000 Genomes Project has the aim of sequencing 100,000 genomes from UK National Health Service (NHS) patients while concomitantly transforming clinical care such that whole genome sequencing becomes routine clinical practice in the UK. Policymakers claim that the project will revolutionize NHS care. We wished to explore the 100,000 Genomes Project, and in particular, the extent to which policymaker claims have helped or hindered the work of those associated with Genomics England – the company established (...)
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  3.  29
    Public trust and ‘ethics review’ as a commodity: the case of Genomics England Limited and the UK’s 100,000 genomes project. [REVIEW]Gabrielle Natalie Samuel & Bobbie Farsides - 2018 - Medicine, Health Care and Philosophy 21 (2):159-168.
    The UK Chief Medical Officer’s 2016 Annual Report, Generation Genome, focused on a vision to fully integrate genomics into all aspects of the UK’s National Health Service. This process of integration, which has now already begun, raises a wide range of social and ethical concerns, many of which were discussed in the final Chapter of the report. This paper explores how the UK’s 100,000 Genomes Project —the catalyst for Generation Genome, and for bringing genomics into the NHS—is negotiating these (...)
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  4.  21
    Mosaic bacterial chromosomes: a challenge en route to a tree of genomes.William Martin - 1999 - Bioessays 21 (2):99-104.
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  5.  28
    Genes and genomes: Carrier detection of deletions in female relatives of X‐linked disorders by non‐isotopic in situ hybridisation.M. Adinolfi, S. Stone & D. Moralli - 1992 - Bioessays 14 (6):421-426.
    Recent studies suggest that a non‐isotopic in situ hybridisation (NISH) approach can be successfully employed to investigate the carrier status of female relatives in families of selected patients with Duchenne muscular dystrophy (DMD) or Hunter syndrome, whose diseases are due to a specific X chromosome deletion.Whilst the majority of metaphase spreads from normal females show specific hybridisation signals on both X chromosomes when tested with either dystrophin or Hunter gene‐derived probes, only one X chromosome in each metaphase spread will show (...)
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  6.  27
    The spectra of point mutations in vertebrate genomes.Guenter Albrecht-Buehler - 2009 - Bioessays 31 (1):98-106.
    In spite of the importance of point mutations for evolution and human diseases, their natural spectrum of incidence in different species is not known. Here I propose to determine these spectra by comparing consecutive sequence periods in stretches of repetitive DNA. The article presents the analysis of more than 51,000 such point mutations identified by this approach in the genomes of human, chimpanzee, rat, mouse, pufferfish, zebrafish, and sea squirt. I propose to explain the observed spectra by auto‐mutagenic mechanisms (...)
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  7.  6
    Ancient Darwinian replicators nested within eubacterial genomes.Frederic Bertels & Paul B. Rainey - 2023 - Bioessays 45 (2):2200085.
    Integrative mobile genetic elements (MGEs), such as transposons and insertion sequences, propagate within bacterial genomes, but persistence times in individual lineages are short. For long‐term survival, MGEs must continuously invade new hosts by horizontal transfer. Theoretically, MGEs that persist for millions of years in single lineages, and are thus subject to vertical inheritance, should not exist. Here we draw attention to an exception – a class of MGE termed REPIN. REPINs are non‐autonomous MGEs whose duplication depends on non‐jumping RAYT (...)
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  8.  8
    Rapid structural and epigenetic changes in polyploid and aneuploid genomes.Jean-François Brunet & Alain Ghysen - 1999 - Bioessays 21 (9):761-767.
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  9.  30
    From simplicity to complexity: The size of the genomes of human pathogens.Harold J. Morowitz, Vijayasarathy Srinivasan & Eric Smith - 2013 - Complexity 18 (5):5-6.
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  10.  23
    Self-organization of genic and intergenic sequence lengths in genomes: Statistical properties and linguistic coherence.Sertac Eroglu - 2016 - Complexity 21 (1):268-282.
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  11.  4
    Genes from Double-Stranded RNA Viruses in the Nuclear Genomes of Fungi.Jeremy Bruenn - 2012 - In Guenther Witzany (ed.), Biocommunication of Fungi. Dordrecht: Springer. pp. 71--83.
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  12.  10
    Putting together the pieces: evolutionary mechanisms at work within genomes.Lynn Helena Caporale - 2009 - Bioessays 31 (7):700-702.
  13.  24
    Watson, J.D.: A passion for DNA: genes, genomes, and society.B. Gr�Frath - 2002 - Poiesis and Praxis 1 (2):167-170.
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  14.  7
    Rapid structural and epigenetic changes in polyploid and aneuploid genomes.M. A. Matzke, O. Mittelsten Scheid & A. J. M. Matzke - 1999 - Bioessays 21 (9):761-767.
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  15.  14
    The transition to civilization and symbolically stored genomes.Jon Beach - 2003 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 34 (1):109-141.
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  16.  24
    The challenges of statistical patterns of language: The case of Menzerath's law in genomes.Ramon Ferrer-I.-Cancho, Núria Forns, Antoni Hernández-Fernández, Gemma Bel-Enguix & Jaume Baixeries - 2013 - Complexity 18 (3):11-17.
  17.  27
    Reply to Li and Grosse's “comments on 'linguistic features in eukaryotic genomes' ”.Panagiotis A. Tsonis & Anastasios A. Tsonis - 2004 - Complexity 9 (4):12-12.
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  18.  14
    G Protein Signaling Components in Filamentous Fungal Genomes.Jacqueline A. Servin, Asharie J. Campbell & Katherine A. Borkovich - 2012 - In Guenther Witzany (ed.), Biocommunication of Fungi. Dordrecht: Springer. pp. 21--38.
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  19.  8
    The Microbial Models of Molecular Biology: From Genes to Genomes.Rowland H. Davis - 2003 - Oxford University Press USA.
    This book explains the role of simple biological model systems in the growth of molecular biology. Essentially the whole history of molecular biology is presented here, tracing the work in bacteriophages in E. coli, the role of other prokaryotic systems, and also the protozoan and algal models—Paramecium and Chlamydomonas, primarily—and the move into eukaryotes with the fungal systems Neurospora, Aspergillus and yeast. Each model was selected for its appropriateness for asking a given class of questions, and each spawned its own (...)
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  20.  12
    Genetic basis of olfactory cognition: extremely high level of DNA sequence polymorphism in promoter regions of the human olfactory receptor genes revealed using the 1000 Genomes Project dataset.Elena V. Ignatieva, Victor G. Levitsky, Nikolay S. Yudin, Mikhail P. Moshkin & Nikolay A. Kolchanov - 2014 - Frontiers in Psychology 5.
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  21.  24
    The E(NK) model: Extending the NK model to incorporate gene‐by‐environment interactions and epistasis for diploid genomes.Mark Cooper & Dean W. Podlich - 2002 - Complexity 7 (6):31-47.
  22.  55
    Genomic Contextualism: Shifting the Rhetoric of Genetic Exceptionalism.John A. Lynch, Aaron J. Goldenberg, Kyle B. Brothers & Nanibaa' A. Garrison - 2019 - American Journal of Bioethics 19 (1):51-63.
    As genomic science has evolved, so have policy and practice debates about how to describe and evaluate the ways in which genomic information is treated for individuals, institutions, and society. The term genetic exceptionalism, describing the concept that genetic information is special or unique, and specifically different from other kinds of medical information, has been utilized widely, but often counterproductively in these debates. We offer genomic contextualism as a new term to frame the characteristics of genomic science in the debates. (...)
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  23.  50
    Germline genome editing versus preimplantation genetic diagnosis: Is there a case in favour of germline interventions?Robert Ranisch - 2019 - Bioethics 34 (1):60-69.
    CRISPR is widely considered to be a disruptive technology. However, when it comes to the most controversial topic, germline genome editing (GGE), there is no consensus on whether this technology has any substantial advantages over existing procedures such as embryo selection after in vitro fertilization (IVF) and preimplantation genetic diagnosis (PGD). Answering this question, however, is crucial for evaluating whether the pursuit of further research and development on GGE is justified. This paper explores the question from both a clinical and (...)
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  24.  51
    Regulating Genome Editing: For an Enlightened Democratic Governance.Giulia Cavaliere, Katrien Devolder & Alberto Giubilini - 2019 - Cambridge Quarterly of Healthcare Ethics 28 (1):76-88.
    How should we regulate genome editing in the face of persistent substantive disagreement about the moral status of this technology and its applications? In this paper, we aim to contribute to resolving this question. We first present two diametrically opposed possible approaches to the regulation of genome editing. A first approach, which we refer to as “elitist,” is inspired by Joshua Greene’s work in moral psychology. It aims to derive at an abstract theoretical level what preferences people would have if (...)
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  25.  35
    Reduced representation sequencing: A success in maize and a promise for other plant genomes.W. Brad Barbazuk, Joseph A. Bedell & Pablo D. Rabinowicz - 2005 - Bioessays 27 (8):839-848.
  26.  19
    Book review:The Microbial Models of Molecular Biology: from Genes to Genomes[REVIEW]Richard D'Ari - 2005 - Bioessays 27 (1):109-110.
  27.  92
    Post-genomics, between reduction and emergence.Michel Morange - 2006 - Synthese 151 (3):355 - 360.
    It is frequently said that biology is emerging from a long phase of reductionism. It would be certainly more correct to say that biologists are abandoning a certain form of reductionism. We describe this past form, and the experiments which challenged the previous vision. To face the difficulties which were met, biologists use a series of concepts and metaphors - pleiotropy, tinkering, epigenetics - the ambiguity of which masks the difficulties, instead of solving them. In a similar way, the word (...)
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  28.  30
    Comments on “linguistic features in eukaryotic genomes”.Wentian Li & Ivo Grosse - 2004 - Complexity 9 (4):10-11.
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  29.  45
    Genome reduction as the dominant mode of evolution.Yuri I. Wolf & Eugene V. Koonin - 2013 - Bioessays 35 (9):829-837.
    A common belief is that evolution generally proceeds towards greater complexity at both the organismal and the genomic level, numerous examples of reductive evolution of parasites and symbionts notwithstanding. However, recent evolutionary reconstructions challenge this notion. Two notable examples are the reconstruction of the complex archaeal ancestor and the intron‐rich ancestor of eukaryotes. In both cases, evolution in most of the lineages was apparently dominated by extensive loss of genes and introns, respectively. These and many other cases of reductive evolution (...)
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  30.  43
    Genome Editing in Livestock, Complicity, and the Technological Fix Objection.Katrien Devolder - 2021 - Journal of Agricultural and Environmental Ethics 34 (3):1-17.
    Genome editing in livestock could potentially be used in ways that help resolve some of the most urgent and serious global problems pertaining to livestock, including animal suffering, pollution, antimicrobial resistance, and the spread of infectious disease. But despite this potential, some may object to pursuing it, not because genome editing is wrong in and of itself, but because it is the wrong kind of solution to the problems it addresses: it is merely a ‘technological fix’ to a complex societal (...)
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  31.  16
    Rowland H. Davis. The Microbial Models of Molecular Biology: From Genes to Genomes. xiv + 337 pp., illus., figs., bibl., index. Oxford/New York: Oxford University Press, 2003. $49.95. [REVIEW]William C. Summers - 2006 - Isis 97 (1):193-194.
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  32.  88
    Genome Editing Technologies and Human Germline Genetic Modification: The Hinxton Group Consensus Statement.Sarah Chan, Peter J. Donovan, Thomas Douglas, Christopher Gyngell, John Harris, Robin Lovell-Badge, Debra J. H. Mathews, Alan Regenberg & On Behalf of the Hinxton Group - 2015 - American Journal of Bioethics 15 (12):42-47.
    The prospect of using genome technologies to modify the human germline has raised profound moral disagreement but also emphasizes the need for wide-ranging discussion and a well-informed policy response. The Hinxton Group brought together scientists, ethicists, policymakers, and journal editors for an international, interdisciplinary meeting on this subject. This consensus statement formulated by the group calls for support of genome editing research and the development of a scientific roadmap for safety and efficacy; recognizes the ethical challenges involved in clinical reproductive (...)
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  33.  35
    Genomics in research and health care with Aboriginal and Torres Strait Islander peoples.Rebekah McWhirter, Dianne Nicol & Julian Savulescu - 2015 - Monash Bioethics Review 33 (2-3):203-209.
    Genomics is increasingly becoming an integral component of health research and clinical care. The perceived difficulties associated with genetic research involving Aboriginal and Torres Strait Islander people mean that they have largely been excluded as research participants. This limits the applicability of research findings for Aboriginal and Torres Strait Islander patients. Emergent use of genomic technologies and personalised medicine therefore risk contributing to an increase in existing health disparities unless urgent action is taken. To allow the potential benefits of genomics (...)
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  34.  58
    Genomic databases as global public goods?Ruth Chadwick & Sarah Wilson - 2004 - Res Publica 10 (2):123-134.
    Recent discussions of genomics and international justice have adopted the concept of ‘global public goods’ to support both the view of genomics as a benefit and the sharing of genomics knowledge across nations. Such discussion relies on a particular interpretation of the global public goods argument, facilitated by the ambiguity of the concept itself. Our aim in this article is to demonstrate this by a close examination of the concept of global public goods with particular reference to its use in (...)
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  35.  8
    Watson, JD: A passion for DNA: genes, genomes, and society Oxford: Oxford University Press, 2000, 270pp.(ISBN 019850697-X) 18.99. [REVIEW]B. Grfrath - 2002 - Poiesis and Praxis 2.
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  36.  56
    Genomic Inheritances: Disclosing Individual Research Results From Whole-Exome Sequencing to Deceased Participants' Relatives.Ben Chan, Flavia M. Facio, Haley Eidem, Sara Chandros Hull, Leslie G. Biesecker & Benjamin E. Berkman - 2012 - American Journal of Bioethics 12 (10):1-8.
    Whole-genome analysis and whole-exome analysis generate many more clinically actionable findings than traditional targeted genetic analysis. These findings may be relevant to research participants themselves as well as for members of their families. Though researchers performing genomic analyses are likely to find medically significant genetic variations for nearly every research participant, what they will find for any given participant is unpredictable. The ubiquity and diversity of these findings complicate questions about disclosing individual genetic test results. We outline an approach for (...)
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  37. Reproductive genome editing interventions are therapeutic, sometimes.César Palacios-González - 2021 - Bioethics 35 (6):557-562.
    In this paper I argue that some human reproductive genome editing interventions can be therapeutic in nature, and thus that it is false that all such interventions just create healthy individuals. I do this by showing that the conditions established by a therapy definition are met by certain reproductive genome editing interventions. I then defend this position against two objections: (a) reproductive genome editing interventions do not attain one of the two conditions for something to be a therapy, and (b) (...)
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  38.  25
    The genome editing revolution: A CRISPR‐Cas TALE off‐target story.Stefano Stella & Guillermo Montoya - 2016 - Bioessays 38 (S1):4-13.
    In the last 10 years, we have witnessed a blooming of targeted genome editing systems and applications. The area was revolutionized by the discovery and characterization of the transcription activator‐like effector proteins, which are easier to engineer to target new DNA sequences than the previously available DNA binding templates, zinc fingers and meganucleases. Recently, the area experimented a quantum leap because of the introduction of the clustered regularly interspaced short palindromic repeats (CRISPR)‐associated protein (Cas) system (clustered regularly interspaced short palindromic (...)
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  39.  24
    The genome‐centric concept: resynthesis of evolutionary theory.Henry H. Q. Heng - 2009 - Bioessays 31 (5):512-525.
    Modern biology has been heavily influenced by the gene‐centric concept. Paradoxically, this very concept – on which bioresearch is based – is challenged by the success of gene‐based research in terms of explaining evolutionary theory. To overcome this major roadblock, it is essential to establish new theories, to not only solve the key puzzles presented by the gene‐centric concept, but also to provide a conceptual framework that allows the field to grow. This paper discusses a number of paradoxes and illustrates (...)
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  40. Human Genome Editing and Ethical Considerations.Kewal Krishan, Tanuj Kanchan & Bahadur Singh - 2016 - Science and Engineering Ethics 22 (2):597-599.
    Editing human germline genes may act as boon in some genetic and other disorders. Recent editing of the genome of the human embryo with the CRISPR/Cas9 editing tool generated a debate amongst top scientists of the world for the ethical considerations regarding its effect on the future generations. It needs to be seen as to what transformation human gene editing brings to humankind in the times to come.
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  41.  13
    Ancient Genomes Reveal Unexpected Horse Domestication and Management Dynamics.Ludovic Orlando - 2020 - Bioessays 42 (1):1900164.
    The horse was essential to past human societies but became a recreational animal during the twentieth century as the world became increasingly mechanized. As the author reviews here, recent studies of ancient genomes have revisited the understanding of horse domestication, from the very early stages to the most modern developments. They have uncovered several extinct lineages roaming the far ends of Eurasia some 4000 years ago. They have shown that the domestic horse has been significantly reshaped during the last (...)
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  42. Genome Informatics: The Role of DNA in Cellular Computations.James A. Shapiro - 2006 - Biological Theory 1 (3):288-301.
    Cells are cognitive entities possessing great computational power. DNA serves as a multivalent information storage medium for these computations at various time scales. Information is stored in sequences, epigenetic modifications, and rapidly changing nucleoprotein complexes. Because DNA must operate through complexes formed with other molecules in the cell, genome functions are inherently interactive and involve two-way communication with various cellular compartments. Both coding sequences and repetitive sequences contribute to the hierarchical systemic organization of the genome. By virtue of nucleoprotein complexes, (...)
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  43. Genomics and the Ark: An Ecocentric Perspective on Human History.Hub Zwart & Bart Penders - 2011 - Perspectives in Biology and Medicine 54 (2):217-231.
    In 1990 the Human Genome Project (HGP) was launched as an important historical marker, a pivotal contribution to the time-old quest for human self-knowledge. However, when in 2001 two major publications heralded its completion, it seemed difficult to make out how the desire for self-knowledge had really been furthered by this endeavor (IHGSC 2001; Venter et al. 2001). In various ways mankind seems to stand out from other organisms as a unique type of living entity, developing a critical perspective on (...)
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  44.  16
    Coupled Genomic Evolutionary Histories as Signatures of Organismal Innovations in Cephalopods.Elena A. Ritschard, Brooke Whitelaw, Caroline B. Albertin, Ira R. Cooke, Jan M. Strugnell & Oleg Simakov - 2019 - Bioessays 41 (12):1900073.
    How genomic innovation translates into organismal organization remains largely unanswered. Possessing the largest invertebrate nervous system, in conjunction with many species‐specific organs, coleoid cephalopods (octopuses, squids, cuttlefishes) provide exciting model systems to investigate how organismal novelties evolve. However, dissecting these processes requires novel approaches that enable deeper interrogation of genome evolution. Here, the existence of specific sets of genomic co‐evolutionary signatures between expanded gene families, genome reorganization, and novel genes is posited. It is reasoned that their co‐evolution has contributed to (...)
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  45.  70
    Psychiatric Genomics and Mental Health Treatment: Setting the Ethical Agenda.Michael Parker, Michael Dunn & Camillia Kong - 2017 - American Journal of Bioethics 17 (4):3-12.
    Realizing the benefits of translating psychiatric genomics research into mental health care is not straightforward. The translation process gives rise to ethical challenges that are distinctive from challenges posed within psychiatric genomics research itself, or that form part of the delivery of clinical psychiatric genetics services. This article outlines and considers three distinct ethical concerns posed by the process of translating genomic research into frontline psychiatric practice and policy making. First, the genetic essentialism that is commonly associated with the genomics (...)
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  46.  59
    Personal genomes: No bad news?Ruth Chadwick - 2010 - Bioethics 25 (2):62-65.
    Issues in genetics and genomics have been centre stage in Bioethics for much of its history, and have given rise to both negative and positive imagined futures. Ten years after the completion of the Human Genome Project, it is a good time to assess developments. The promise of whole genome sequencing of individuals requires reflection on personalization, genetic determinism, and privacy.
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  47.  24
    Human Genome Editing and Identity: The Precariousness of Existence and the Abundance of Argumentative Options.Inmaculada de Melo-Martín - 2022 - American Journal of Bioethics 22 (9):18-20.
    In “Human germline genome editing: On the nature of our reasons to genome edit,” Robert Sparrow (2022) presents a central claim and a secondary one. The central claim is that, for the foreseeable f...
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  48. Genomic research and data-mining technology: Implications for personal privacy and informed consent.Herman T. Tavani - 2004 - Ethics and Information Technology 6 (1):15-28.
    This essay examines issues involving personal privacy and informed consent that arise at the intersection of information and communication technology and population genomics research. I begin by briefly examining the ethical, legal, and social implications program requirements that were established to guide researchers working on the Human Genome Project. Next I consider a case illustration involving deCODE Genetics, a privately owned genetics company in Iceland, which raises some ethical concerns that are not clearly addressed in the current ELSI guidelines. The (...)
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  49.  3
    Spatial genome organization, TGFβ, and biomolecular condensates: Do they talk during development?Marta Vicioso-Mantis & Marian A. Martínez-Balbás - 2022 - Bioessays 44 (12):2200145.
    Cis‐regulatory elements govern gene expression programs to determine cell identity during development. Recently, the possibility that multiple enhancers are orchestrated in clusters of enhancers has been suggested. How these elements are arranged in the 3D space to control the activation of a specific promoter remains unclear. Our recent work revealed that the TGFβ pathway drives the assembly of enhancer clusters and precise gene activation during neurogenesis. We discovered that the TGFβ pathway coactivator JMJD3 was essential in maintaining these structures in (...)
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  50. The Genome as the Biological Unconscious – and the Unconscious as the Psychic 'Genome': A Psychoanalytical Rereading of Molecular Genetics.Hub Zwart - 2013 - Cosmos and History 9 (2):198-222.
    1900 was a remarkable year for science. Several ground-breaking events took place, in physics, biology and psychology. Planck introduced the quantum concept, the work of Mendel was rediscovered, and Sigmund Freud published The Interpretation of Dreams . These events heralded the emergence of completely new areas of inquiry, all of which greatly affected the intellectual landscape of the 20 th century, namely quantum physics, genetics and psychoanalysis. What do these developments have in common? Can we discern a family likeness, a (...)
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