The goal of this paper is to encourage a reconfiguration of the discussion about typology in biology away from the metaphysics of essentialism and toward the epistemology of classifying natural phenomena for the purposes of empirical inquiry. First, I briefly review arguments concerning ‘typological thinking’, essentialism, species, and natural kinds, highlighting their predominantly metaphysical nature. Second, I use a distinction between the aims, strategies, and tactics of science to suggest how a shift from metaphysics to epistemology might be (...) accomplished. Typological thinking can be understood as a scientific tactic that involves representing natural phenomena using idealizations and approximations, which facilitates explanation, investigation, and theorizing via abstraction and generalization. Third, a variety of typologies from different areas of biology are introduced to emphasize the diversity of this representational reasoning. One particular example is used to examine how there can be epistemological conflict between typology and evolutionary analysis. This demonstrates that alternative strategies of typological thinking arise due to the divergent explanatory goals of researchers working in different disciplines with disparate methodologies. I conclude with several research questions that emerge from an epistemological reconfiguration of typology. (shrink)

It is a common complaint that antireductionist arguments are primarily negative. Here I describe an alternative nonreductionist epistemology based on considerations taken from multidisciplinary research in biology. The core of this framework consists in seeing investigation as coordinated around sets of problems (problem agendas) that have associated criteria of explanatory adequacy. These ideas are developed in a case study, the explanation of evolutionary innovations and novelties, which demonstrates the applicability and fruitfulness of this nonreductionist epistemological perspective. This account also (...) bears on questions of conceptual change and theory structure in philosophy of science. †To contact the author, please write to: Department of Philosophy, University of Minnesota, 831 Heller Hall, 271 19th Ave. S., Minneapolis, MN 55455; e‐mail: [email protected]. (shrink)

This article examines the discursive practices evident in Whole-Class Text-Response Discussion as a pervasive curriculum activity in secondary English classrooms in Australia. This site was selected as an important one in the social construction of adolescents as apprentice citizens capable of reasoning from text in culturally valued ways. Bernstein's model of pedagogic discourse provides a sociologically principled framework within which the construction of particular forms of argumentative reasoning can be examined, as these forms are regulated either through visible or (...) invisible pedagogies. Halliday's model of social semiotics provides the linguistic tools for the examination of how institutionally privileged values and ways of reasoning are realized in the micro-semantic exchanges of two such whole-class text-response discussions; one regulated through a highly visible pedagogy and the other through a relatively invisible pedagogy. (shrink)

John Norton’s argument that all formal theories of induction fail raises substantive questions about the philosophical analysis of scientific reasoning. What are the criteria of adequacy for philosophical theories of induction, explanation, or theory structure? Is more than one adequate theory possible? Using a generalized version of Norton’s argument, I demonstrate that the competition between formal and material theories in philosophy of science results from adhering to different criteria of adequacy. This situation encourages an interpretation of “formal” (...) and “material” as indicators of divergent criteria that accompany different philosophical methodologies. I characterize another criterion of adequacy associated with material theories, the avoidance of imported problems, and conclude that one way to negotiate between conflicting criteria is to adopt a pluralist stance toward philosophical theories of scientific reasoning. (shrink)

It is widely accepted that stressful conditions can facilitate evolutionary change. The mechanisms elucidated thus far accomplish this with a generic increase in heritable variation that facilitates more rapid adaptive evolution, often via plastic modifications of existing characters. Through scrutiny of different meanings of stress in biological research, and an explicit recognition that stressors must be characterized relative to their effect on capacities for maintaining functional integrity, we distinguish between: (1) previously identified stress-responsive mechanisms that facilitate evolution by maintaining an (...) adaptive fit with the environment, and (2) the co-option of stress-responsive mechanisms that are specific to stressors leading to the origin of novelties via compensation. Unlike standard accounts of gene co-option that identify component sources of evolutionary change, our model documents the cost-benefit trade-offs and thereby explains how one mechanism—an immediate response to acute stress—is transformed evolutionarily into another—routine protection from recurring stressors. We illustrate our argument with examples from cell type origination as well as processes and structures at higher levels of organization. These examples suggest a general principle of evolutionary origination based on the capacity to switch between regulatory states related to reproduction and proliferation versus survival and differentiation. (shrink)

Phillip Sloan has thoroughly documented the importance of Darwin's general invertebrate research program in the period from 1826 to 1836 and demonstrated how it had an impact on his conversion to transformism. Although Darwin later spent eight years of his life investigating barnacles, this period has received less treatment in studies of Darwin and the development of his thought. The most prominent question for the barnacle period that has been attended to is why Darwin "delayed" in publishing his theory (...) of evolution. A related but distinct question concerns the variety of earlier events and influences that led Darwin to the study of "Cirripedia" in 1846, apart from its role in the trajectory that led to "On the Origin of Species ". In this paper I focus on four specific episodes prior to 1846 that inform a picture of why Darwin had an antecedent interest in barnacles: the orientation to collecting strange and curious invertebrate organisms, as well as the strong affinities of Darwin's invertebrate collecting on the Beagle voyage with the work of John Vaughan Thompson; the critical role of marine invertebrate fossils in Darwin's geological reasoning aboard the Beagle and exemplified in his "Geological Observations of South America;" the strange absence of a "Zoology of the Beagle" volume on invertebrates and Darwin's original intent to publish some of the descriptions himself; and the noteworthy presence of barnacles in Darwin's transformation theorizing between 1837 and 1839. There is a wealth of support for the thesis that Darwin had a strong interest in cirripedes prior to the formal barnacle research, blunting arguments that it was psychological aversion or a feeling of inferiority about his taxonomic abilities that drove Darwin to the cirripedes. (shrink)

If we set aside personal edification, what reasons remain for a philosopher of science to study the intellectual biography of a famous (or infamous) scientist? This question raises familiar and perhaps tired arguments about the relationship between history of science and philosophy of science, but it is also practical: why take the time to digest almost 600 pages devoted to the controversial German zoologist Ernst Haeckel? A preliminary answer is the author. The historical investigations of Robert Richards have been of (...) ongoing interest to philosophers, whether it be evolutionary explanations of mind and behavior in the nineteenth century (Dennett 1989) or his contentious claims—reinvigorated in the present volume—about Darwin’s commitment to embryonic recapitulation (Lennox 1994). Richards has a knack for unearthing details germane to conceptual reflection, in no small part because of his own philosophical predilections (e.g., a selection model of scientific theory development). Here I entertain three more reasons to follow the injunction tolle lege: the prescient synthesis exemplified in Haeckel’s evolutionary theorizing, the impact of model organism choice, and the critical role of pictures in scientific reasoning accented by Haeckel’s artistic proclivities. (shrink)

The theory of punctuated equilibrium holds that long periods of morphological stasis in fossil lineages are interrupted by bursts of geologically rapid evolutionary change. Philip Kitcher’s long and distinguished career is not directly analogous to this pattern, but his philosophy exhibits stasis and change. He has both maintained a position or line of argument consistently and shifted significantly in his views. These evolutionary patterns are on display in the volume co-edited by Mark Couch and Jessica Pfeifer, both of whom (...) were advised by Kitcher though at different institutions. The Philosophy of Philip Kitcher consists of an introduction plus 11 chapters devoted to central themes in Kitcher’s oeuvre. In each chapter, distinguished colleagues offer sustained engagement with one theme followed by a succinct and magnanimous response from Kitcher. The format is illuminating and helps display the complex evolutionary dynamics in the thought of an eminent contemporary philosopher. (shrink)

A message scribbled irreverently on the mediaeval walls of the Nonberg cloister says this: ‘Neither of us can go to heaven unless the other gets in.’ It suggests an argument against the view that those who love people who suffer in hell can be perfectly happy, or even free from all suffering, in heaven. This paper considers the challenge posed by this thought to the coherence of the traditional Christian doctrine on which there are some people in (...) hell who are suffering and others in heaven who are not suffering. More precisely, it defends the following argument:1. No one who loves another can be perfectly happy or free from suffering if they know that their beloved is suffering.2. Anyone in hell suffers.3. Anyone in heaven is perfectly happy or at least free from suffering.4. There can be no one in heaven who is aware of the fact that his or her beloved is in hell. The paper argues that the first premise is eminently plausible and that those who accept t.. (shrink)

In the paper it is argued that the conceptual resources of Christianity topple the hiddenness argument. According to the author, the variability of the divine love cast doubt on the soundness of Schellenberg’s reasoning. If we understood a perfect love as a maximal and equal concern and identification with all and for all, then a divine love would entail divine impartiality, but because of conflicts of interest between human beings the perfect, divine love cannot be (...) maximal. (shrink)

This paper criticizes one of the premises of Schellenberg’s atheistic argument from divine hiddenness. This premise, which can be considered as the foundation of his proposed argument, is based on a specific interpretation of divine love as eros. In this paper I first categorize several concepts of divine love under two main categories, eros and agape; I then answer some main objections to the ascription of eros to God; and in the last part I show (...) that neither on a reading of divine love as agape nor as eros can Schellenberg’s argument be construed as sound. My aim is to show that even if -- contra Nygren for example -- we accept that divine love can be interpreted as eros, Schellenberg’s argument still doesn’t work. (shrink)

According to the view we may term “strong cognitivism”, all reasons for action are rooted in normative features that the motivated subject takes objects to have independently of her attitudes towards these objects. The main concern of this paper is to argue against strong cognitivism, that is, to establish the view that conative attitudes do provide subjects with reasons for action. The central argument to this effect is a top-down argument: it proceeds by an analysis of the complex (...) phenomenon of love and derives a conclusion regarding the nature of more basic mental phenomena—particular desires. More specifically, its starting point is the crude intuition that the significance conferred by love upon its objects is of a distinctively personal kind—an intuition that is expressed by the apparent non-substitutability of two similar subjects only one of whom is loved with respect to their importance for the lover. I argue that the initial notion of non-substitutability can be refined and modified so as to form a real challenge to all versions of strong cognitivism and to establish the existence of attitude-dependent reasons. (shrink)

This chapter contains sections titled: Introduction Goal and Scope of the Argument The Concept of a Miracle Textual Assumptions Background Facts: Death and Burial The Salient Facts: W, D, and P Probabilistic Cumulative Case Arguments: Nature and Structure The Testimony of the Women: Bayes Factor Analysis The Testimony of the Disciples: Bayes Factor Analysis The Conversion of Paul: Bayes Factor Analysis The Collective Force of the Salient Facts Independence Hume's Maxim and Worldview Worries Plantinga's Principle of Dwindling Probabilities Knavery, (...) Folly, and the Love of Wonder Conclusion References. (shrink)

When God is conceived of as an all-powerful and all-loving deity, many arguments for his nonexistence can be raised. Two of the main ones are the Argument from Evil (hereafter abbreviated AE) and the Argument from Nonbelief (hereafter abbreviated ANB). In what follows, I shall provide precise formulations of those two arguments, make some comments about them, and then try to refute the main defenses (of God's existence) that might be put forward against ANB, which I (...) consider the stronger of the two. I take ANB to be a sound argument establishing the proposition that God (conceived of in a certain way) does not exist. (shrink)

οὕτω τὸ τοῦ κάλλους ῥεῦμα πάλιν εἰς τὸν καλὸν διὰ τῶν ὀμμάτων...

Do we rightly expect a perfectly loving God to bring it about that, right now, we reasonably believe that He exists? It seems so. For love at its best desires the well-being of the beloved, not from a distance, but up close, explicitly participating in her life in a personal fashion, allowing her to draw from that relationship what she may need to flourish. But why suppose that we would be significantly better off were God to engage (...) in an explicit, personal relationship with us? Well, first, there would be broadly moral benefits. We would be able to draw on the resources of that relationship to overcome seemingly everpresent flaws in our character. And we would be more likely to emulate the self-giving love with which we were loved. So loved, we would be more likely to flourish as human beings. Secondly, there would be experiential benefits. We would be, for example, more likely to experience peace and joy stemming from the strong conviction that we were properly related to our Maker, security in suffering knowing that, ultimately, all shall be well, and there would be the sheer pleasure of God's loving presence. As a consequence of these moral and experiential benefits, our relationships with others would likely improve. Thirdly, to be personally related to God is intrinsically valuable, indeed, according to the Christian tradition, the greatest intrinsic good. In these ways our well-being would be enhanced if God were to relate personally to us. Moreover, the best love does not seek a personal relationship only for the sake of the beloved. As Robert Adams rightly notes, "It is an abuse of the word 'love' to say that one loves a person, or any other object, if one does not care, except instrumentally, about one's relation to that object."1 Thus, God would want a personal relationship with us not only for the benefit we would receive from it but for its own sake as well. So, if a perfectly loving God exists, He wants a personal relationship with us, or more accurately, every capable creature, those cognitively and affectively equipped to relate personally with Him.. (shrink)

Christian apologetics has recently gained a new impetus from authors such as Alister McGrath, who advocates a new, Trinitarian approach to natural theology, the main purpose of which is to confirm a resonance between scientific discoveries and Christian doctrine, thus confirming its credibility. In this article, we use Trinitarian natural theology, which has many advantages over classical natural theology, on the example of the surprising phenomenon of true love. This is manifested in the material world in The Principle (...) of Insufficient Reason, observable through observations of deeds of love, which lack reciprocity and, in the lifeworld in the essence of ratio-sui or selfexplicability of true love, experienceable through experiences of explanation of the reasons for love with love itself. The analysis of different layers of reality and its scientific methods, together with the postpositivistic recognition of the plurality of methods, has shown that the method of inference to the best explanation, which is used in the article, is a legitimate scientific method. The Christian doctrine of the Triune God of Love and the doctrine of perichoresis make perfect sense of the empirical observations and lifeworld experiences of true love. However, the question remains unanswered: which of the worldviews best explains the curious and surprising phenomenon of true love? (shrink)

Some have argued that unipersonal concepts of God collapse into incoherence, so that such a being is no more possible than a square circle, or at least that such theologies are, as non-trinitarian, significantly less probable than some trinitarian theologies. I discuss the general strategy and examine recent arguments by William Lane Craig, C. Stephen Layman, Thomas V. Morris, and Richard Swinburne based on divine love, flourishing, and glory. I show why none of these arguments is compelling, as each (...) has at least one weak premise. (shrink)

Character realism is the view that many people have and act from character. This short paper attempts to articulate and draw attention to the underappreciated connection between our commonplaces about good friendship and character realism.

According to J. L. Schellenberg’s argument from the reasonableness of nonbelief, the fact that many people inculpably fail to find sufficient evidence for the existence of God constitutes evidence for atheism. Schellenberg argues that since a loving God would not withhold the benefits of belief, the lack of evidence for God’s existence is incompatible with divine love. I argue that Schellenberg has not successfully defended his argument’s two controversial premises, that God’s love is incompatible with (...) his allowing some to remain in doubt that he exists, and that the nonbelief of some agnostics is inculpable. From the standpoint of what Christians believe about God, there are plausible reasons, which Schellenberg has not succeeded in refuting, for thinking that all nonbelief is culpable. I argue also that a loving God could have reasons remaining hidden to some persons, which are consistent with his desire to draw all people to faith. (shrink)

This article aims to provide an a posteriori argument from love for the Trinity. A reformulation of the argument from love is made by proposing a novel version of the argument that is situated within an objective, empirical, natural theological framework. Reformulating the argument in this specific manner will enable it to ward of an important objection that is often raised against it, and ultimately render this argument of great use in (...) establishing the necessity of the Trinity. (shrink)

J. L. Schellenberg’s hiddenness argument for atheism assumes that God’s perpetual openness to a relationship with any finite person is consistent with their perpetual flourishing. However, I argue that if Aquinas-Stump’s account of the nature of love is true, then any finite person flourishes the most only if they attain the greatest degree of union among God and all relevant parties. Moreover, if Humean externalism is true, then any finite person might not have their greatest attainable degree of (...) union among God and all relevant parties, as soon as possible, unless God sacrifices some time in the union—not the whole union—with them. Accordingly, God’s perpetual openness might not be consistent with the future flourishing of any finite person—from which it follows that a crucial assumption of the hiddenness argument might not be true. (shrink)

The argument from ignorance mounted by John Schellenberg argues from the existence of non-faulty unbelief to the non-existence of God, from the fact of atheism or agnosticism to the truth of atheism. It relies on two putative conceptual relations: between the idea of love and that of personal relationship, and between personal relationship and existential belief on each side of the relation concerning the other relatum. I argue that each is debatable, and so the (...) class='Hi'>argument cannot proceed. (shrink)

The central focus of this article is to provide a new “Love Argument” for the necessary truth of the Latin “model” of the doctrine of the Trinity—termed “Latin Trinitarianism”—from an a priori standpoint. This new argument, called the Agápēic Argument, will be formulated in light of the metaphysical notions of a “trope,” introduced by D. C. Williams, and “multiple location,” posited by Antony Eagle, and the ethical concept of agápē, proposed by Alexander Pruss. Doing this (...) will provide a specific argument that provides strong grounds for affirming the necessary truth of the Trinity, without, however, being subject to the primary objections that have been often raised against the existing versions of the argument. (shrink)

Evolutionary developmental biology (or developmental evolution) is in the middle stages of its “development.” Its early ontogeny cannot be traced back to fertilization but pivotal developmental events included Gould’s (1977) treatment of heterochrony, Riedl’s (1978) analysis of “burden”, the Dahlem conference of 1981, a British Society of Developmental Biologists Symposium, as well as books that incorporated developmental genetics into older comparative themes. A major inductive process began with the discovery of widespread phylogenetic conservation in homeobox-containing genes. One interpretation of these (...) early developmental dynamics holds that an increasingly prominent problem agenda (e.g., how do novel structures and functions originate?), inherited from long-standing research programs in comparative embryology, morphology, and paleontology, was handed a powerful set of experimental tools from the lineage of experimental embryology. This allowed for an experimental probing of development and its evolution in an unprecedented fashion. Although the relationship between evolution and development has exhibited a protracted and complex history, we are still in the process of comprehending these early stages of “modern” EvoDevo’s ontogeny. (shrink)

This paper focuses on abstraction as a mode of reasoning that facilitates a productive relationship between philosophy and science. Using examples from evolutionary developmental biology, I argue that there are two areas where abstraction can be relevant to science: reasoning explication and problem clarification. The value of abstraction is characterized in terms of methodology (modeling or data gathering) and epistemology (explanatory evaluation or data interpretation).

Evolutionary developmental biology (Evo-devo) is a vibrant area of contemporary life science that should be (and is) increasingly incorporated into teaching curricula. Although the inclusion of this content is important for biological pedagogy at multiple levels of instruction, there are also philosophical lessons that can be drawn from the scientific practices found in Evo-devo. One feature of particular significance is the interdisciplinary nature of Evo-devo investigations and their resulting explanations. Instead of a single disciplinary approach being the most explanatory (...) or fundamental, different methodologies from biological disciplines must be synthesized to generate empirically adequate explanations. Thus, Evo-devo points toward a non-reductionist epistemology in biology. I review three areas where these synthetic efforts become manifest as a result of Evo-devo’s practices (form versus function reasoning styles; problem-structured investigations; idealizations related to studying model organisms), and then sketch some possible applications to teaching biology. These philosophical considerations provide resources for life science educators to address (and challenge) key aspects of the National Science Education Standards and Benchmarks for Scientific Literacy. (shrink)

“Functional homology” appears regularly in different areas of biological research and yet it is apparently a contradiction in terms—homology concerns identity of structure regardless of form and function. I argue that despite this conceptual tension there is a legitimate conception of ‘homology of function’, which can be recovered by utilizing a distinction from pre-Darwinian physiology (use versus activity) to identify an appropriate meaning of ‘function’. This account is directly applicable to molecular developmental biology and shares a connection to the (...) theme of hierarchy in homology. I situate ‘homology of function’ within existing definitions and criteria for structural assessments of homology, and introduce a criterion of ‘organization’ for judging function homologues, which focuses on hierarchically interconnected interdependencies (similar to relative position and connection for skeletal elements in structural homology). This analysis of biological concepts has at least three broad philosophical consequences: (1) it provides the grounds for the study of behavior and psychological categories as homologues; (2) it demonstrates that philosophers who take selected effect function as primary effectively ignore large portions of comparative, structural, and experimental research, thereby misconstruing biological reasoning and knowledge; and, (3) it underwrites causal generalizations, which illuminates inferences made from model organisms in experimental biology. (shrink)

This volume explores questions about conceptual change from both scientific and philosophical viewpoints by analyzing the recent history of evolutionary developmental biology. It features revised papers that originated from the workshop "Conceptual Change in Biological Science: Evolutionary Developmental Biology, 1981-2011" held at the Max Planck Institute for the History of Science in Berlin in July 2010. The Preface has been written by Ron Amundson. In these papers, philosophers and biologists compare and contrast key concepts in evolutionary developmental biology (...) and their development since the original, seminal Dahlem conference on evolution and development held in Berlin in 1981. Many of the original scientific participants from the 1981 conference are also contributors to this new volume and, in conjunction with other expert biologists and philosophers specializing on these topics, provide an authoritative, comprehensive view on the subject. Taken together, the papers supply novel perspectives on how and why the conceptual landscape has shifted and stabilized in particular ways, yielding insights into the dynamic epistemic changes that have occurred over the past three decades. This volume will appeal to philosophers of biology studying conceptual change, evolutionary developmental biologists focused on comprehending the genesis of their field and evaluating its future directions, and historians of biology examining this period when the intersection of evolution and development rose again to prominence in biological science. (shrink)

Many philosophers of biology have embraced a version of pluralism in response to the failure of theory reduction but overlook how concepts, methods, and explanatory resources are in fact coordinated, such as in interdisciplinary research where the aim is to integrate different strands into an articulated whole. This is observable for the origin of evolutionary novelty—a complex problem that requires a synthesis of intellectual resources from different fields to arrive at robust answers to multiple allied questions. It is an (...) apt locus for exploring new dimensions of explanatory integration because it necessitates coordination among historical and experimental disciplines . These coordination issues are widespread for the origin of novel morphologies observed in the Cambrian Explosion. Despite an explicit commitment to an integrated, interdisciplinary explanation, some potential disciplinary contributors are excluded. Notable among these exclusions is the physics of ontogeny. We argue that two different dimensions of integration—data and standards—have been insufficiently distinguished. This distinction accounts for why physics-based explanatory contributions to the origin of novelty have been resisted: they do not integrate certain types of data and differ in how they conceptualize the standard of uniformitarianism in historical, causal explanations. Our analysis of these different dimensions of integration contributes to the development of more adequate and integrated explanatory frameworks. (shrink)

Although natural philosophers have long been interested in individuality, it has been of interest to contemporary philosophers of biology because of its role in different aspects of evolutionary biology. These debates include whether species are individuals or classes, what counts as a unit of selection, and how transitions in individuality occur evolutionarily. Philosophical analyses are often conducted in terms of metaphysics (“what is an individual?”), rather than epistemology (“how can and do researchers conceptualize individuals so as to address some of (...) their scientific goals?”). We review several philosophical distinctions in order to shift attention from metaphysics to epistemology. Many controversies involve epistemological differences rather than metaphysical disagreement. This implies that a pluralist stance about individuality in biology is warranted and has metaphysical consequences because the pluralism emerges from the diversity of scientific interests that investigate the complexity of living phenomena. (shrink)

Many biologists and philosophers have worried that importing models of reasoning from the physical sciences obscures our understanding of reasoning in the life sciences. In this paper we discuss one example that partially validates this concern: part-whole reductive explanations. Biology and physics tend to incorporate different models of temporality in part-whole reductive explanations. This results from differential emphases on compositional and causal facets of reductive explanations, which have not been distinguished reliably in prior philosophical analyses. Keeping these two (...) facets distinct facilitates the identifi cation of two further aspects of reductive explanation: intrinsicality and fundamentality. Our account provides resources for discriminating between different types of reductive explanation and suggests a new approach to comprehending similarities and differences in the explanatory reasoning found in biology and physics. (shrink)

The Routledge Handbook of Mechanisms and Mechanical Philosophy is an outstanding reference source to the key topics, problems, and debates in this exciting subject and is the first collection of its kind. Comprising over thirty chapters by a team of international contributors, the Handbook is divided into four Parts: Historical perspectives on mechanisms The nature of mechanisms Mechanisms and the philosophy of science Disciplinary perspectives on mechanisms. Within these Parts central topics and problems are examined, including the rise of mechanical (...) philosophy in the seventeenth century; what mechanisms are made of and how they are organized; mechanisms and laws and regularities; how mechanisms are discovered and explained; dynamical systems theory; and disciplinary perspectives from physics, chemistry, biology, biomedicine, ecology, neuroscience, and the social sciences. Essential reading for students and researchers in philosophy of science, the Handbook will also be of interest to those in related fields, such as metaphysics, philosophy of psychology, and history of science. (shrink)

Every scientist chooses a preferred level of analysis and this choice shapes the research program, even determining what counts as evidence. This contribution revisits Marr's three levels of analysis and evaluates the prospect of making progress at each individual level. After reviewing limitations of theorizing within a level, two strategies for integration across levels are considered. One is top–down in that it attempts to build a bridge from the computational to algorithmic level. Limitations of this approach include insufficient theoretical (...) constraint at the computation level to provide a foundation for integration, and that people are suboptimal for reasons other than capacity limitations. Instead, an inside-out approach is forwarded in which all three levels of analysis are integrated via the algorithmic level. This approach maximally leverages mutual data constraints at all levels. For example, algorithmic models can be used to interpret brain imaging data, and brain imaging data can be used to select among competing models. Examples of this approach to integration are provided. This merging of levels raises questions about the relevance of Marr's tripartite view. (shrink)

Using the context of controversies surrounding evolutionary developmental biology (EvoDevo) and the possibility of an Extended Evolutionary Synthesis, I provide an account of theory structure as idealized theory presentations that are always incomplete (partial) and shaped by their conceptual content (material rather than formal organization). These two characteristics are salient because the goals that organize and regulate scientific practice, including the activity of using a theory, are heterogeneous. This means that the same theory can be structured differently, in part because (...) theory presentations (as idealizations) intentionally depart from different features known to be present in a theory. Since there are diverse and potentially incompatible theory structures derived from heterogeneous goals found in scientific practices, a question arises about the absence of a unifying theory structure in the background. The notion of a “theory façade” offers a fruitful perspective on this potentially unsettling result. (shrink)

Represents the most comprehensive and current survey of the various challenges to the Modern Synthesis theory of evolution. Incorporates a variety of theoretical and disciplinary perspectives, from evolutionary biologists, historians and philosophers of science. These essays constitute the state of the art in the current debate on the status of the Modern Synthesis.

The ubiquity of top-down causal explanations within and across the sciences is prima facie evidence for the existence of top-down causation. Much debate has been focused on whether top-down causation is coherent or in conflict with reductionism. Less attention has been given to the question of whether these representations of hierarchical relations pick out a single, common hierarchy. A negative answer to this question undermines a commonplace view that the world is divided into stratified ‘levels’ of organization and suggests that (...) attributions of causal responsibility in different hierarchical representations may not have a meaningful basis for comparison. Representations used in top-down and bottom-up explanations are primarily ‘local’ and tied to distinct domains of science, illustrated here by protein structure and folding. This locality suggests that no single metaphysical account of hierarchy for causal relations to obtain within emerges from the epistemology of scientific explanation. Instead, a pluralist perspective is recommended—many different kinds of top-down causation (explanation) can exist alongside many different kinds of bottom-up causation (explanation). Pluralism makes plausible why different senses of top-down causation can be coherent and not in conflict with reductionism, thereby illustrating a productive interface between philosophical analysis and scientific inquiry. (shrink)

Idealization is a reasoning strategy that biologists use to describe, model and explain that purposefully departs from features known to be present in nature. Similar to other strategies of scientific reasoning, idealization combines distinctive strengths alongside of latent weaknesses. The study of ontogeny in model organisms is usually executed by establishing a set of normal stages for embryonic development, which enables researchers in different laboratory contexts to have standardized comparisons of experimental results. Normal stages are a form of idealization (...) because they intentionally ignore known variation in development, including variation associated with phenotypic plasticity (e.g. via strict control of environmental variables). This is a tension between the phenomenon of plasticity and the practice of staging that has consequences for evolutionary developmental investigation because variation is conceptually removed as a part of rendering model organisms experimentally tractable. Two compensatory tactics for mitigating these consequences are discussed: employing a diversity of model organisms and adopting alternative periodizations. (shrink)

Erratum to Using the context of controversies surrounding evolutionary developmental biology (EvoDevo) and the possibility of an Extended Evolutionary Synthesis, I provide an account of theory structure as idealized theory presentations that are always incomplete (partial) and shaped by their conceptual content (material rather than formal organization). These two characteristics are salient because the goals that organize and regulate scientific practice, including the activity of using a theory, are heterogeneous. This means that the same theory can be structured differently, in (...) part because theory presentations (as idealizations) intentionally depart from different features known to be present in a theory. Since there are diverse and potentially incompatible theory structures derived from heterogeneous goals found in scientific practices, a question arises about the absence of a unifying theory structure in the background. The notion of a “theory façade” offers a fruitful perspective on this potentially unsettling result. (shrink)

Abstract Universality, rather than partiality, is the characteristic of Confucian jen. This article puts forward three arguments to clarify confusion of interpretation: (1) that jen, rather than shu, is the main thread running through the whole system of Confucianism, and that by its two procedures of chung and shu, it presents itself as an integration of one's self with others; (2) that jen, as love, does not signify a natural preference, but an ethical refinement of an ordinary feeling of (...) fondness, that it derives from such a feeling but goes beyond it, and that it functions as a universal commitment which begins with family affection but is not limited to it; (3) that jen, as universal love, is deontological in motive, not only in contrast to a mutuality of love but also in opposition to a utilitarianism of love. (shrink)

While there are many points of opposition between the political philosophies of Marx and Kant, the two can greatly benefit from one another in various ways. Bringing the ideas of Marx and Kant together offers a promising way forward for each view. Most significantly, a powerful critique of capitalism can be developed from their combined thought: Kant’s political philosophy offers a robust idea of freedom to ground this critique, while Marx provides the nuanced understanding of social and political (...) power structures under capitalism that allows this idea of freedom to be properly applied. (shrink)

An analysis of the value systems of critical social issues is difficult to carry out in any qualified sense from an unstructured basis and that attempts to do so easily result in relatively superficial discussions of particular issues. Instead, we suggest how this might be viewed from a more holistic ethical and systems theological perspective. In doing so, we review a new framework that aims to distil relevant issues regarding necessary trade-offs and how this can be done. Broadly (...) speaking, this consists of a kind of Socratic dialogue that systematically examines the value basis of the decisions that need to be made, as well as whether the effects of the decisions become unacceptable and thus need to be modified vis-à-vis the normative system embraced by the decision-maker. We discuss the role of theologians in this and emphasise that they should take a larger place in discussions on how to deal with complex societal crises. (shrink)

This edited collection showcases some of the best recent research in the philosophy of science. It comprises of thematically arranged papers presented at the 5th conference of the European Philosophy of Science Association (EPSA15), covering a broad variety of topics within general philosophy of science, and philosophical issues pertaining to specific sciences. The collection will appeal to researchers with an interest in the philosophical underpinnings of their own discipline, and to philosophers who wish to study the latest work on the (...) themes discussed. (shrink)

Exploring history pertinent to evolutionary developmental biology (hereafter, Evo-devo) is an exciting prospect given its current status as a cutting-edge field of research. The first and obvious question concerns where to begin searching for materials and sources. Since this new discipline adopts a moniker that intentionally juxtaposes ‘evolution’ and development’, individuals, disciplines, and institutional contexts relevant to the history of evolutionary studies and investigations of ontogeny prompt themselves. Each of these topics has received attention from historians and thus there (...) is both primary and secondary material from which to draw. For example, many historians have documented the historical trajectories of genetics and embryology, their split, and various relations (or lack thereof), especially in the first three decades of the 20th century. (shrink)

Review symposium of Alexander Rosenberg’s Darwinian Reductionism: Or, How to Stop Worrying and Love Molecular Biology [2006]. -/- Worry carries with it a connotation of false concern, as in ‘your mother is always worried about you’. And yet some worrying, including that of your mother, turns out to be justified. Alexander Rosenberg’s new book is an extended argument intended to assuage false concerns about reductionism and molecular biology while encouraging a loving embrace of the two.