Results for 'RNA silencing'

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  1.  22
    Viral suppression of RNA silencing: 2b wins the Golden Fleece by defeating Argonaute.Virginia Ruiz-Ferrer & Olivier Voinnet - 2007 - Bioessays 29 (4):319-323.
    In plants, virus‐derived double‐stranded RNA is processed into small interfering (si)RNAs by RNAse III‐type enzymes. siRNAs are believed to guide an RNA‐induced silencing complex (RISC) to promote sequence‐specific degradation (or ‘slicing’) of homologous viral transcripts. This process, called RNA silencing, likely involves Argonaute (AGO) proteins that are known components of plant and animal RISCs. Plant viruses commonly counteract the silencing immune response by producing suppressor proteins, but the molecular basis of their action has remained largely unclear. A (...)
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  2.  11
    Gene silencing in non‐model insects: Overcoming hurdles using symbiotic bacteria for trauma‐free sustainable delivery of RNA interference.Miranda Whitten & Paul Dyson - 2017 - Bioessays 39 (3).
    Insight into animal biology and development provided by classical genetic analysis of the model organism Drosophila melanogaster was an incentive to develop advanced genetic tools for this insect. But genetic systems for the over one million other known insect species are largely undeveloped. With increasing information about insect genomes resulting from next generation sequencing, RNA interference is now the method of choice for reverse genetics, although it is constrained by the means of delivery of interfering RNA. A recent advance to (...)
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  3.  43
    The PIWI-Interacting RNA Molecular Pathway: Insights From Cultured Silkworm Germline Cells.Kazuhiro Sakakibara & Mikiko C. Siomi - 2018 - Bioessays 40 (1):1700068.
    The PIWI-interacting RNA pathway, one of the major eukaryotic small RNA silencing pathways, is a genome surveillance system that silences selfish genes in animal gonads. piRNAs guide PIWI protein to target genes through Watson–Crick RNA–RNA base-parings. Loss of piRNA function causes genome instability, inducing failure in gametogenesis and infertility. Studies using fruit flies and mice as key experimental models have resulted in tremendous progress in understanding the mechanism underlying the piRNA pathway. Recent work using cultured silkworm germline cells has (...)
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  4.  31
    Detection of unpaired DNA at meiosis results in RNA‐mediated silencing.Michael J. Hynes & Richard B. Todd - 2003 - Bioessays 25 (2):99-103.
    During meiosis, homologous chromosomes must pair in order to permit recombination and correct chromosome segregation to occur. Two recent papers1,2 show that meiotic pairing is also important for correct gene expression during meiosis. They describe data for the filamentous fungus Neurospora crassa that show that a lack of pairing generated by ectopic integration of genes can result in silencing of genes expressed during meiosis. This can result in aberrant meioses whose defects are specific to the function of the unpaired (...)
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  5.  22
    Long non‐coding RNA modifies chromatin.Alka Saxena & Piero Carninci - 2011 - Bioessays 33 (11):830-839.
    Common themes are emerging in the molecular mechanisms of long non‐coding RNA‐mediated gene repression. Long non‐coding RNAs (lncRNAs) participate in targeted gene silencing through chromatin remodelling, nuclear reorganisation, formation of a silencing domain and precise control over the entry of genes into silent compartments. The similarities suggest that these are fundamental processes of transcription regulation governed by lncRNAs. These findings have paved the way for analogous investigations on other lncRNAs and chromatin remodelling enzymes. Here we discuss these common (...)
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  6.  10
    The alien replicon: Artificial genetic constructs to direct the synthesis of transmissible self‐replicating RNAs.Alex V. Kochetov - 2014 - Bioessays 36 (12):1204-1212.
    Artificial genetic constructs that direct the synthesis of self‐replicating RNA molecules are used widely to induce gene silencing, for bioproduction, and for vaccination. Interestingly, one variant of the self‐replicon has not been discussed in the literature: namely, transgenic organisms that synthesise alien replicons. For example, plant cells may be easily genetically modified to produce bacteriophages or insect viruses. Alien replicon‐producing organisms (ARPOs) may serve as a unique tool for biocontrol or to selectively influence the characteristics of a target organism. (...)
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  7.  11
    Species‐specific micro RNA regulation influences phenotypic variability.Eyal Mor & Noam Shomron - 2013 - Bioessays 35 (10):881-888.
    Phenotypic divergence among animal species may be due in part to species‐specific (SS) regulation of gene expression by small, non‐coding regulatory RNAs termed “microRNAs”. This phenomenon can be modulated by several variables. First, microRNA genes vary by their level of conservation, many of them being SS, or unique to a particular evolutionary lineage. Second, microRNA expression levels vary spatially and temporally in different species. Lastly, while microRNAs bind the 3′UTR of target genes in order to silence their expression, the binding (...)
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  8.  10
    The multifaceted h TR telomerase RNA from a structural perspective.Maya Raghunandan & Anabelle Decottignies - 2021 - Bioessays 43 (10):2100099.
    Human telomerase progressively emerged as a multifaceted ribonucleoprotein complex with additional functions beyond telomeric repeat synthesis. Both the hTERT catalytic subunit and the hTR long non‐coding RNA (lncRNA) subunit are engaged in highly regulated cellular pathways that, together, contribute to cell fitness and protection against apoptosis. We recently described a new role for hTR in regulating the abundance of replication protein A at telomeres, adding to the growing repertoire of hTR’s functions. Here, we focus on the non‐canonical roles of hTR (...)
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  9.  24
    The double-stranded RNA binding domain of human Dicer functions as a nuclear localization signal.Michael Doyle, Lukas Badertscher, Lukasz Jaskiewicz, Stephan Güttinger, Sabine Jurado, Tabea Hugenschmidt, Ulrike Kutay & Witold Filipowicz - unknown
    Dicer is a key player in microRNA (miRNA) and RNA interference (RNAi) pathways, processing miRNA precursors and doublestranded RNA into ~21-nt-long products ultimately triggering sequence-dependent gene silencing. Although processing of substrates in vertebrate cells occurs in the cytoplasm, there is growing evidence suggesting Dicer is also present and functional in the nucleus. To address this possibility, we searched for a nuclear localization signal (NLS) in human Dicer and identified its C-terminal double-stranded RNA binding domain (dsRBD) as harboring NLS activity. (...)
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  10.  2
    Advancing evolution: Bacteria break down gene silencer to express horizontally acquired genes.Eduardo A. Groisman & Jeongjoon Choi - 2023 - Bioessays 45 (10):2300062.
    Horizontal gene transfer advances bacterial evolution. To benefit from horizontally acquired genes, enteric bacteria must overcome silencing caused when the widespread heat‐stable nucleoid structuring (H‐NS) protein binds to AT‐rich horizontally acquired genes. This ability had previously been ascribed to both anti‐silencing proteins outcompeting H‐NS for binding to AT‐rich DNA and RNA polymerase initiating transcription from alternative promoters. However, we now know that pathogenic Salmonella enterica serovar Typhimurium and commensal Escherichia coli break down H‐NS when this silencer is not (...)
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  11.  10
    Do repeated arrays of regulatory small‐RNA genes elicit genomic imprinting?Stéphane Labialle & Jérôme Cavaillé - 2011 - Bioessays 33 (8):565-573.
    The basic premise of the host‐defense theory is that genomic imprinting, the parent‐of‐origin expression of a subset of mammalian genes, derives from mechanisms originally dedicated to silencing repeated and retroviral‐like sequences that deeply colonized mammalian genomes. We propose that large clusters of tandemly‐repeated C/D‐box small nucleolar RNAs (snoRNAs) or microRNAs represent a novel category of sequences recognized as “genomic parasites”, contributing to the emergence of genomic imprinting in a subset of chromosomal regions that contain them. Such a view is (...)
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  12.  20
    Global analysis of siRNA‐mediated transcriptional gene silencing.Harsh H. Kavi, Weiwu Xie, Harvey R. Fernandez & James A. Birchler - 2005 - Bioessays 27 (12):1209-1212.
    The RNAi machinery is not only involved with post‐transcriptional degradation of messenger RNAs, but also used for targeting of chromatin changes associated with transcriptional silencing. Two recent papers determine the global patterns of gene expression and chromatin modifications produced by the RNAi machinery in fission yeast.(9, 10) The major sites include the outer centromere repeats, the mating‐type locus and subtelomeric regions. By comparison, studies of Arabidopsis heterochromatin also implicate transposons as a major target for silencing. Analyses of siRNA (...)
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  13.  12
    Surveillance of Retroelement Expression and Nucleic‐Acid Immunity by Histone Methyltransferase SETDB1.Yong-Kook Kang - 2018 - Bioessays 40 (9):1800058.
    In human cancers, histone methyltransferase SETDB1 (SET domain, bifurcated 1) is frequently overexpressed but its significance in carcinogenesis remains elusive. A recent study shows that SETDB1 downregulation induces de‐repression of retroelements and innate immunity in cancer cells. The possibility of SETDB1 functioning as a surveillant of retroelement expression is discussed in this study: the cytoplasmic presence of retroelement‐derived nucleic acids (RdNAs) drives SETDB1 into the nucleus by the RNA‐interference route, rendering the corresponding retroelement transcriptionally inert. These RdNAs could, therefore, be (...)
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  14.  15
    RNAi in X inactivation: contrasting findings on the role of interference.Satya K. Kota - 2009 - Bioessays 31 (12):1280-1283.
    X inactivation is the process that brings about the dosage equivalence of X‐linked genes in females to that of males. This complex process initiated at a very early stage of female embryonic development is orchestrated by long non‐coding RNAs transcribed in both sense and antisense orientation. Recent studies present contradicting evidence for the role of small RNAs and RNase III enzyme Dicer in the X inactivation process. In this review, I discuss these results in the overall perspective of X inactivation (...)
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  15.  10
    How does noncoding transcription regulate Hox genes?Adelheid Lempradl & Leonie Ringrose - 2008 - Bioessays 30 (2):110-121.
    Noncoding RNA has arrived at centre stage in recent years with the discovery of “hidden transcriptomes” in many higher organisms. Over two decades ago, noncoding transcripts were discovered in Drosophila Hox complexes, but their function has remained elusive. Recent studies1-3 have examined the role of these noncoding RNAs in Hox gene regulation, and have generated a fierce debate as to whether the noncoding transcripts are important for silencing or activation. Here we review the evidence, and show that, by taking (...)
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  16.  34
    Too Many False Targets for MicroRNAs: Challenges and Pitfalls in Prediction of miRNA Targets and Their Gene Ontology in Model and Non‐model Organisms.Arie Fridrich, Yael Hazan & Yehu Moran - 2019 - Bioessays 41 (4):1800169.
    Short (“seed”) or extended base pairing between microRNAs (miRNAs) and their target RNAs enables post‐transcriptional silencing in many organisms. These interactions allow the computational prediction of potential targets. In model organisms, predicted targets are frequently validated experimentally; hence meaningful miRNA‐regulated processes are reported. However, in non‐models, these reports mostly rely on computational prediction alone. Many times, further bioinformatic analyses such as Gene Ontology (GO) enrichment are based on these in silico projections. Here such approaches are reviewed, their caveats are (...)
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  17.  19
    Do heritable immune responses extend physiological individuality?Sophie Juliane Veigl - 2022 - History and Philosophy of the Life Sciences 44 (4):1-20.
    Immunology and its philosophy are a primary source for thinking about biological individuality. Through its discriminatory function, the immune system is believed to delineate organism and environment within one generation, thus defining the physiological individual. Based on the paradigmatic instantiations of immune systems, immune interactions and, thus, the physiological individual are believed to last only for one generation. However, in recent years, transgenerationally persisting immune responses have been reported in several phyla, but the consequences for physiological individuality have not yet (...)
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  18.  26
    Beta‐catenin and axis formation in planarians.Hans Meinhardt - 2009 - Bioessays 31 (1):5-9.
    In three recent articles it was shown that β‐catenin is crucial for the establishment and the maintenance of the overall polarity and especially for the character ‘posterior’ in planarians. If the transcription of the β‐catenin gene was silenced by RNA interference, the overall polarity is lost, and in regenerating fragments a posterior blastema displays anterior characters by forming eyes and anterior ganglia. An attempt is made to integrate these new data, well‐known older observations, and observations from other regenerating systems into (...)
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  19.  12
    The Y chromosome as a target for acquired and amplified genetic material in evolution.Vladimir A. Gvozdev, Galina L. Kogan & Lev A. Usakin - 2005 - Bioessays 27 (12):1256-1262.
    The special properties of the Y chromosome stem form the fact that it is a non‐recombining degenerate derivative of the X chromosome. The absence of homologous recombination between the X and the Y chromosome leads to gradual degeneration of various Y chromosome genes on an evolutionary timescale. The absence of recombination, however, also favors the accumulation of transposable elements on the Y chromosome during its evolution, as seen with both Drosophila and mammalian Y chromosomes. Alongside these processes, the acquisition and (...)
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  20.  21
    Monoallelic gene expression and mammalian evolution.Barry Keverne - 2009 - Bioessays 31 (12):1318-1326.
    Monoallelic gene expression has played a significant role in the evolution of mammals enabling the expansion of a vast repertoire of olfactory receptor types and providing increased sensitivity and diversity. Monoallelic expression of immune receptor genes has also increased diversity for antigen recognition, while the same mechanism that marks a single allele for preferential rearrangement also provides a distinguishing feature for directing hypermutations. Random monoallelic expression of the X chromosome is necessary to balance gene dosage across sexes. In marsupials only (...)
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  21.  25
    Factor mediated gene priming in pluripotent stem cells sets the stage for lineage specification.Niall Dillon - 2012 - Bioessays 34 (3):194-204.
    Priming of lineage‐specific genes in pluripotent embryonic stem cells facilitates rapid and coordinated activation of transcriptional programmes during differentiation. There is growing evidence that pluripotency factors play key roles in priming tissue‐specific genes and in the earliest stages of lineage commitment. As differentiation progresses, pluripotency factors are replaced at some primed genes by related lineage‐specific factors that bind to the same sequences and maintain epigenetic priming until the gene is activated. Polycomb and trithorax group proteins bind many genes in pluripotent (...)
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  22. The double solution of the theory of relativity.Julius Järnåker - 1970 - [Uppsala,: Almqvist & Wiksell.
     
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  23.  7
    ʻAql-i surkh: sharḥ va taʼvīl-i dāstānʹhā-yi ramzī-i Suhravardī.Taqī Pūrnāmdārīyān - 2011 - Tihrān: Intishārāt-i Sukhan. Edited by Yaḥyá ibn Ḥabash Suhrawardī.
  24. Cad fúinne, mar sin?: what of us, then?Colm Ó Tórna - 2019 - [Dublin]: Foilsithe ag Teangscéal.
     
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  25. Quo Vanis, a Chreidmhigh?Colm Ó Tórna - 2015 - Binn Eadair, Baile Átha Cliath: Coiscéim.
     
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  26.  13
    Stanley Cavell.Silences Noises Voices - 2001 - In Juliet Floyd & Sanford Shieh (eds.), Future pasts: the analytic tradition in twentieth-century philosophy. New York: Oxford University Press.
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  27. Courtney S. Campbell.Sounds Of Silence - 1991 - Theological Developments in Bioethics, 1988-1990 1:23.
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  28.  11
    authoritative General Handbook of Instructions (hereafter Instructions), these initial documents addressed such· problems· as abortion, artificial.Courtneys Campbell & Sounds Of Silence - forthcoming - Bioethics Yearbook.
  29. Tracking Epistemic Violence, Tracking Practices of Silencing.Kristie Dotson - 2011 - Hypatia 26 (2):236-257.
    Too often, identifying practices of silencing is a seemingly impossible exercise. Here I claim that attempting to give a conceptual reading of the epistemic violence present when silencing occurs can help distinguish the different ways members of oppressed groups are silenced with respect to testimony. I offer an account of epistemic violence as the failure, owing to pernicious ignorance, of hearers to meet the vulnerabilities of speakers in linguistic exchanges. Ultimately, I illustrate that by focusing on the ways (...)
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  30. "Calm down, dear": intellectual arrogance, silencing and ignorance.Alessandra Tanesini - 2016 - Aristotelian Society Supplementary Volume 90 (1):71-92.
    In this paper I provide an account of two forms of intellectual arrogance which cause the epistemic practices of conversational turn-taking and assertion to malfunction. I detail some of the ethical and epistemic harms generated by intellectual arrogance, and explain its role in fostering the intellectual vices of timidity and servility in other agents. Finally, I show that arrogance produces ignorance by silencing others (both preventing them from speaking and causing their assertions to misfire) and by fostering self-delusion in (...)
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  31. A Comprehensive Definition of Illocutionary Silencing.Laura Caponetto - 2021 - Topoi 40 (1):191-202.
    A recurring concern within contemporary philosophy of language has been with the ways in which speakers can be illocutionarily silenced, i.e. hindered in their capacity to do things with words. Moving beyond the traditional conception of silencing as uptake failure, Mary Kate McGowan has recently claimed that silencing may also involve other forms of recognition failure. In this paper I first offer a supportive elaboration of McGowan’s claims by developing a social account of speech act performance, according to (...)
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  32.  62
    Unconscious attention modulates the silencing effect of top-down predictions.Xu Chen, Guangming Ran, Qi Zhang & Tianqiang Hu - 2015 - Consciousness and Cognition 34:63-72.
  33.  34
    Rationalism and the silencing and distorting of Indigenous voices.Yann Allard-Tremblay - 2021 - Critical Review of International Social and Political Philosophy 24 (7):1024-1047.
    The politics of reconciliation, in Canada, finds its origin in judgements of the Supreme Court affirming the objective of reconciling the sui generis authority and continued distinct existence of I...
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  34.  69
    Chapter 7. Ways of Silencing Critics.G. A. Cohen - 2012 - In Gerald Allan Cohen (ed.), Finding oneself in the other. Princeton University Press. pp. 134-142.
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  35.  17
    Challenging Masculinity in CSR Disclosures: Silencing of Women’s Voices in Tanzania’s Mining Industry.Sarah Lauwo - 2018 - Journal of Business Ethics 149 (3):689-706.
    This paper presents a feminist analysis of corporate social responsibility in a male-dominated industry within a developing country context. It seeks to raise awareness of the silencing of women’s voices in CSR reports produced by mining companies in Tanzania. Tanzania is one of the poorest countries in Africa, and women are often marginalised in employment and social policy considerations. Drawing on work by Hélène Cixous, a post-structuralist/radical feminist scholar, the paper challenges the masculinity of CSR discourses that have repeatedly (...)
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  36. A Partial Defense of Illocutionary Silencing.Mary Kate McGowan, Alexandra Adelman, Sara Helmers & Jacqueline Stolzenberg - 2011 - Hypatia 26 (1):132 - 149.
    Catharine MacKinnon has pioneered a new brand of anti-pornography argument. In particular, MacKinnon claims that pornography silences women in a way that violates their right to free speech. In what follows, we focus on a certain account of silencing put forward by Jennifer Hornsby and Rae Langton, and we defend that account against two important objections. The first objection contends that this account makes a crucial but false assumption about the necessary role of hearer recognition in successful speech acts. (...)
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  37. How did you feel when the Crocodile Hunter died?’: voicing and silencing in conversation.Celia Harris, Amanda Barnier, John Sutton & Paul Keil - 2010 - Memory 18 (2):170-184.
    Conversations about the past can involve voicing and silencing; processes of validation and invalidation that shape recall. In this experiment we examined the products and processes of remembering a significant autobiographical event in conversation with others. Following the death of Australian celebrity Steve Irwin, in an adapted version of the collaborative recall paradigm, 69 participants described and rated their memories for hearing of his death. Participants then completed a free recall phase where they either discussed the event in groups (...)
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  38.  23
    Illocutionary acts, subordination and silencing.Max De Gaynesford - 2009 - Analysis 69 (3):488-490.
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  39.  23
    Rationalism and the silencing and distorting of Indigenous voices.Yann Allard-Tremblay - 2021 - Critical Review of International Social and Political Philosophy 24 (7):1024-1047.
    The politics of reconciliation, in Canada, finds its origin in judgements of the Supreme Court affirming the objective of reconciling the sui generis authority and continued distinct existence of I...
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  40.  8
    Eyeing tumorigenesis: Notch signaling and epigenetic silencing of Rb in Drosophila.Håkan Axelson - 2006 - Bioessays 28 (7):692-695.
    Notch signaling plays an essential role in the processes of embryogenesis and cellular differentiation, and it is believed that the oncogenic effects of dysregulated Notch signaling are an anomalous reflection of the normal functions of this cascade. Nonetheless, the cellular events associated with oncogenic Notch signaling have thus far remained elusive. In a recent report, Ferres‐Marco et al.1 described how they used the Drosphila eye as a model system and found that elevated Notch signaling in combination with activation of components (...)
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  41.  48
    Rescuing Liberalism from Silencing.Aluizio Couto - 2020 - Journal of Academic Ethics 19 (4):465-481.
    In this paper, I criticize two recent and influential arguments for no-platforming advanced by Robert Simpson and Amia Srinivasan and by Neil Levy, respectively. What both arguments have in common is their attempt to reconcile no-platforming with liberal values. For Simpson and Srinivasan, no-platforming does not contradict liberalism if grounded on the distinction between norms of free speech and norms of academic freedom; for Levy, those who defend the practice need not be accused of promoting paternalism. I argue that neither (...)
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  42. Online communities, self-silencing, and lost rhetorical spaces.Kelly Kinney - 2001 - Kairos: A Journal of Rhetoric, Technology, and Pedagogy 6 (1).
     
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  43.  8
    Activators antagonize heterochromatic silencing: Reply to Eissenberg/Reply to Martin.Joel C. Eissenberg - 2002 - Bioessays 24 (1):102-103.
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  44.  81
    José Medina, The epistemology of protest: silencing, epistemic activism, and the communicative life of resistance (Oxford: Oxford University Press, 2023).José Medina, Mihaela Mihai, Lisa Guenther, Andrea Pitts & Robin Celikates - 2024 - Contemporary Political Theory 23 (2):284-310.
  45. The Dutch Homo-Emancipation Policy and its Silencing Effects on Queer Muslims.Suhraiya Jivraj & Anisa de Jong - 2011 - Feminist Legal Studies 19 (2):143-158.
    The recent Dutch homo-emancipation policy has identified religious communities, particularly within migrant populations, as a core target group in which to make homosexuality more ‘speakable’. In this article we examine the paradoxical silencing tendencies of this ‘speaking out’ policy on queer Muslim organisations in the Netherlands. We undertake this analysis as the Dutch government is perhaps unique in developing an explicit ‘homo-emancipation’ policy and is often looked to as the model for sexuality politics and legal redress in relation to (...)
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  46. Are "Epistemic" and "Communicative" Models of Silencing in Conflict?Leo Townsend & Dina Lupin Townsend - 2021 - Social Epistemology Review and Reply Collective 7 (10):27-32.
  47.  27
    Domestic abuse in marriage and self-silencing: Pastoral care in a context of self-silencing.Sinenhlanhla S. Chisale - 2018 - HTS Theological Studies 74 (1):1-8.
    The socialisation of women into self-silencing by religion has complicated pastoral care interventions for the victims of domestic violence, particularly within the context of marriage. This article is written from an intercultural approach to pastoral care and applies the theory on silence. The aim of this article is to explore the way pastoral caregivers can extend caregiving to the victims of marital domestic violence who have silenced the self. The article draws from qualitative data that were collected through autobiographical (...)
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  48.  54
    Activators antagonize heterochromatic silencing: Reply to Eissenberg/Reply to Martin.David Ik Martin & Joel C. Eissenberg - 2002 - Bioessays 24 (1):102-103.
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  49.  4
    Broken continuities and silencing the feminist legacy of the First World War.Andrea Pető - 2014 - European Journal of Women's Studies 21 (3):304-307.
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  50.  11
    Polycomb Repressive Complexes in Hox Gene Regulation: Silencing and Beyond.Claudia Gentile & Marie Kmita - 2020 - Bioessays 42 (10):1900249.
    The coordinated expression of the Hox gene family encoding transcription factors is critical for proper embryonic development and patterning. Major efforts have thus been dedicated to understanding mechanisms controlling Hox expression. In addition to the temporal and spatial sequential activation of Hox genes, proper embryonic development requires that Hox genes get differentially silenced in a cell‐type specific manner as development proceeds. Factors contributing to Hox silencing include the polycomb repressive complexes (PRCs), which control gene expression through epigenetic modifications. This (...)
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