Results for 'translesion synthesis'

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  1.  12
    Post‐replication repair in DT40 cells: translesion polymerases versus recombinases.Helfrid Hochegger, Eichiro Sonoda & Shunichi Takeda - 2004 - Bioessays 26 (2):151-158.
    Replication forks inevitably stall at damaged DNA in every cell cycle. The ability to overcome DNA lesions is an essential feature of the replication machinery. A variety of specialized polymerases have recently been discovered, which enable cells to replicate past various forms of damage by a process termed translesion synthesis. Alternatively, homologous recombination can be used to restart DNA replication across the lesion. Genetic and biochemical studies have shed light on the impact of these two post‐replication repair pathways (...)
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  2.  37
    R.I.P. to the PIP: PCNA‐binding motif no longer considered specific.Elizabeth M. Boehm & M. Todd Washington - 2016 - Bioessays 38 (11):1117-1122.
    Many proteins responsible for genome maintenance interact with one another via short sequence motifs. The best known of these are PIP motifs, which mediate interactions with the replication protein PCNA. Others include RIR motifs, which bind the translesion synthesis protein Rev1, and MIP motifs, which bind the mismatch repair protein Mlh1. Although these motifs have similar consensus sequences, they have traditionally been viewed as separate motifs, each with their own target protein. In this article, we review several recent (...)
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  3. Section A. membranes.Protein Synthesis as A. Membrane-Oriented & Richard W. Hendler - 1968 - In Peter Koestenbaum (ed.), Proceedings. [San Jose? Calif.,: [San Jose? Calif.. pp. 37.
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  4.  29
    Therefore, what are recombination proteins there for?Justin Courcelle, Ann K. Ganesan & Philip C. Hanawalt - 2001 - Bioessays 23 (5):463-470.
    The order of discovery can have a profound effect upon the way in which we think about the function of a gene. In E. coli, recA is nearly essential for cell survival in the presence of DNA damage. However, recA was originally identified, as a gene required to obtain recombinant DNA molecules in conjugating bacteria. As a result, it has been frequently assumed that recA promotes the survival of bacteria containing DNA damage by recombination in which DNA strand exchanges occur. (...)
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  5.  13
    The RAD6 DNA repair pathway in Saccharomyces cerevisiae: What does it do, and how does it do it?Christopher Lawrence - 1994 - Bioessays 16 (4):253-258.
    The RAD6 pathway of budding yeast, Saccharomyces cerevisiae, is responsible for a substantial fraction of this organism's resistance to DNA damage, and also for induced mutagenesis. The pathway appears to incorporate two different recovery processes, both regulated by RAD6. The error‐prone recovery prcess accounts for only a small amount of RAD6‐dependent resistance, but probably all induced mutagenesis. The underlying mechanism, for error‐prone recovery is very likely to be translesion synthesis. The error‐free recovery process accounts for most of RAD6‐dependent (...)
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  6.  4
    Functional hierarchy of PCNA‐interacting motifs in DNA processing enzymes.Samir M. Hamdan & Alfredo De Biasio - 2023 - Bioessays 45 (6):2300020.
    Numerous eukaryotic DNA processing enzymes, such as DNA polymerases and ligases, bind the processivity factor PCNA, which acts as a platform to recruit and regulate the binding of enzymes to their DNA substrate. Multiple PCNA‐interacting motifs (PIPs) are present in these enzymes, but their individual structural and functional role has been a matter of debate. Recent cryo‐EM reconstructions of high‐fidelity DNA polymerase Pol δ (Pol δ), translesion synthesis DNA polymerase κ (Pol κ) and Ligase 1 (Lig1) bound to (...)
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  7.  8
    The 'A rule' of mutagen specificity: A consequence of DNA polymerase bypass of non‐instructional lesions?Bernard S. Strauss - 1991 - Bioessays 13 (2):79-84.
    The replicative bypass of lesions in DNA and the induction of mutations by agents which react with DNA to produce damaged bases can be understood on the basis of a simple kinetic model. Bypass can be analyzed by separately considering three processes: (a) addition of a base opposite a lesion, (b) a proofreading excision process, and (c) a rate limiting elongation step. Adenine nucleotides are preferentially added opposite many lesions making it possible to predict mutational specificity. Replicative bypass (translesion (...)
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  8.  7
    Passive Synthesis und Intersubjektivität bei Edmund Husserl.Ichiro Yamaguchi - 1982 - Hingham, MA: Springer.
    Das Problem der Intersubjektivitiit Intersubjektivität ist Husserl schon seit der Darstellung der Ideen I in Zusammenhang mit dem Problem der phiinomenologischen phänomenologischen Reduk tion sehr stark bewusst und wird, wie die neue VerOffentlichung Veröffentlichung 'Zur Phänome Phiinome nologie der Intersubjektivität'l Intersubjektivitiit'l ausdrücklich ausdrucklich zeigt, zeit seines Lebens in seinem Denken mit mehr oder weniger Intensitiit Intensität behandelt. Bekanntlich hat Husserl Hussed die Einfühlungslehre EinfUhlungslehre in seinem spiiten späten Versuch mit der 'Selbstobjektivation' 'Selbstobjektivation',, 'Selbstauslegung' des absoluten, anonymen, transzen 2 dentalen ego (...)
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  9. Extended Synthesis: Theory Expansion or Alternative?Gerd B. Müller & Massimo Pigliucci - 2010 - Biological Theory 5 (3):275-276.
    A response to Lindsay Craig's essay, The So-Called Extended Synthesis and Population Genetics.
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  10. Synthesis, Schmimagination and Regress.Dennis Schulting - manuscript
    Talk at University of Turin, 'Kant, oltre Kant, May 5th 2023. --- -/- It is useful, while keeping in mind a holistic approach, to concentrate on a common theme in Kant’s text, which it will turn out is the quintessential element of his novel ‘way of thinking’, as he himself put it in preface of the second edition of the Critique of Pure Reason. This common theme is the idea of synthesis, which is what holds together, and is the (...)
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  11.  31
    The synthesis of Chinese and Western philosophy in Mao Tse-tung's theory of dialectic.Andreas Arndt - 1981 - Studies in Soviet Thought 22 (3):196-205.
  12.  35
    Synthesis and Selection: Wynne-Edwards' Challenge to David Lack.Mark E. Borrello - 2003 - Journal of the History of Biology 36 (3):531-566.
    David Lack of Oxford University and V. C. Wynne- Edwards of Aberdeen University were renowned ornithologists with contrasting views of the modern synthesis which deeply influenced their interpretation and explanation of bird behavior. In the 1950's and 60's Lack became the chief advocate of neo-Darwinism with respect to avian ecology, while Wynne- Edwards developed his theory of group selection. Lack 's position was consistent with the developing focus on individual level adaptation, which was a core concept of the modern (...)
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  13.  17
    Realist synthesis: a critique and an alternative.Kate Hinds & Kelly Dickson - 2021 - Journal of Critical Realism 20 (1):1-17.
    Realist synthesis is often offered as a useful strategy to understand intervention complexity. Its unique selling point is its basis in a critical realist philosophy of science. However, we argue t...
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  14.  61
    Synthesis and Transcendental Idealism.Ralph C. S. Walker - 1985 - Kant Studien 76 (1-4):14-27.
  15. Evolution – the Extended Synthesis.Massimo Pigliucci & Gerd B. Muller (eds.) - 2010 - MIT Press.
    In the six decades since the publication of Julian Huxley's Evolution: The Modern Synthesis, spectacular empirical advances in the biological sciences have been accompanied by equally significant developments within the core theoretical framework of the discipline. As a result, evolutionary theory today includes concepts and even entire new fields that were not part of the foundational structure of the Modern Synthesis. In this volume, sixteen leading evolutionary biologists and philosophers of science survey the conceptual changes that have emerged (...)
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  16.  40
    Unmodern Synthesis: Developmental Hierarchies and the Origin of Phenotypes.Richard Gawne, Kenneth Z. McKenna & H. Frederik Nijhout - 2018 - Bioessays 40 (1):1600265.
    The question of whether the modern evolutionary synthesis requires an extension has recently become a topic of discussion, and a source of controversy. We suggest that this debate is, for the most part, not about the modern synthesis at all. Rather, it is about the extent to which genetic mechanisms can be regarded as the primary determinants of phenotypic characters. The modern synthesis has been associated with the idea that phenotypes are the result of gene products, while (...)
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  17.  38
    Concept synthesis of dignity in care for elderly facility residents.Nanako Hasegawa & Katsumasa Ota - 2019 - Nursing Ethics 26 (7-8):2016-2034.
    Background:Protecting the dignity of elderly residents of facilities and providing dignified care can be difficult. Although attempts have been made from several aspects, dignity is considered an area in which less real impact has been made in both theory and practice.Objective:The objective of this study is to characterize the concept of dignity in care for elderly subjects in residential facilities from a practical perspective through concept synthesis.Research design:This study includes in-depth interviews with residents of elderly facilities and a literature (...)
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  18.  34
    Synthesis as a route to knowledge.Steven A. Benner - 2013 - Biological Theory 8 (4):357-367.
    A science is an intellectual activity defined by its mechanisms that prevent its scientists from always reaching the conclusions that they set out to reach. Such mechanisms are needed because, if scientists are given full control over what hypotheses they select, what data they discard, and what results they publish, they can communicate any conclusion that they desire. Synthesis, by setting a grand challenge, forces scientists across uncharted territory where they encounter and solve unscripted problems. When theory is inadequate, (...)
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  19. An Extended Synthesis for Evolutionary Biology.Massimo Pigliucci - 2009 - Annals of the New York Academy of Science 1168:218-228.
    Evolutionary theory is undergoing an intense period of discussion and reevaluation. This, contrary to the misleading claims of creationists and other pseudoscientists, is no harbinger of a crisis but rather the opposite: the field is expanding dramatically in terms of both empirical discoveries and new ideas. In this essay I briefly trace the conceptual history of evolutionary theory from Darwinism to neo-Darwinism, and from the Modern Synthesis to what I refer to as the Extended Synthesis, a more inclusive (...)
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  20. Synthesis.Jacob Rump - 2020 - In Daniele De Santis, Burt C. Hopkins & Claudio Majolino (eds.), The Routledge Handbook of Phenomenology and Phenomenological Philosophy. New York, NY: Routledge. pp. 376-88..
    Handbook entry on "Synthesis," surveying the roles played by synthesis in Husserl, important precursors in the history of philosophy, and the legacy of the term in Heidegger and Merleau-Ponty.
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  21. A synthesis of the prevailing conflict management paradigms: Toward a Unity of Conflict.James D. Smith - 2013 - Dissertation, Fielding Graduate University
    This synthesis of 5 prominent conflict management paradigms uses power differential as the single most contributing variable to their process and outcome of conflict. Efforts of scholars to integrate or synthesize conflict paradigms have been unsuccessful or clumsy by the scholars’ own assessments. The 5 selected paradigms represent an interdisciplinary set of normative and descriptive paradigms from different social contexts and intellectual frameworks. The 5 share the common traits of rival goals, three levels of socially constructed power differential, and (...)
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  22.  28
    Evidence synthesis indicates contentless experiences in meditation are neither truly contentless nor identical.Toby J. Woods, Jennifer M. Windt & Olivia Carter - 2024 - Phenomenology and the Cognitive Sciences 23 (2):253-304.
    Contentless experience involves an absence of mental content such as thought, perception, and mental imagery. In academic work it has been classically treated as including states like those aimed for in Shamatha, Transcendental, and Stillness Meditation. We have used evidence synthesis to select and review 135 expert texts from within the three traditions. In this paper we identify the features of contentless experience referred to in the expert texts and determine whether the experiences are the same or different across (...)
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  23.  26
    E-Synthesis: A Bayesian Framework for Causal Assessment in Pharmacosurveillance.Francesco De Pretis, Jürgen Landes & Barbara Osimani - 2019 - Frontiers in Pharmacology 10.
    Background: Evidence suggesting adverse drug reactions often emerges unsystematically and unpredictably in form of anecdotal reports, case series and survey data. Safety trials and observational studies also provide crucial information regarding the (un-)safety of drugs. Hence, integrating multiple types of pharmacovigilance evidence is key to minimising the risks of harm. Methods: In previous work, we began the development of a Bayesian framework for aggregating multiple types of evidence to assess the probability of a putative causal link between drugs and side (...)
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  24.  6
    Circuit Synthesis by Solving Sequential Boolean Equations.Hao Wang - 1959 - Mathematical Logic Quarterly 5 (14‐24):291-322.
  25.  20
    Circuit Synthesis by Solving Sequential Boolean Equations.Hao Wang - 1959 - Mathematical Logic Quarterly 5 (14-24):291-322.
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  26.  1
    Circuit Synthesis by Solving Sequential Boolean Equations.Hao Wang - 1960 - Journal of Symbolic Logic 25 (4):373-375.
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  27. Modern Synthesis is the Light of Microbial Genomics.Austin Booth, Carlos Mariscal & W. Ford Doolittle - 2016 - Annual Reviews of Microbiology 70 (1):279-297.
  28.  36
    Synthesis and the Content of Pure Concepts in Kant's First Critique.J. Michael Young - 1994 - Journal of the History of Philosophy 32 (3):331-357.
  29. Creative Synthesis and Philosophic Method.Charles Hartshorne - 1970 - Religious Studies 7 (3):265-266.
     
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  30.  22
    DNA synthesis control in yeast: An evolutionarily conserved mechanism for regulating DNA synthesis genes?Gary F. Merrill, Brian A. Morgan, Noel F. Lowndes & Leland H. Johnston - 1992 - Bioessays 14 (12):823-830.
    After yeast cells commit to the cell cycle in a process called START, genes required for DNA synthesis are expressed in late G1. Periodicity is mediated by a hexameric sequence, known as a MCB element, present in all DNA synthesis gene promoters. A complex that specifically binds MCBs has been identified. One polypeptide in the MCB complex is Swi6, a transcription factor that together with Swi4 also binds G1 cyclin promoters and participates in a positive feedback loop at (...)
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  31.  32
    Rethinking the Synthesis Period in Evolutionary Studies.Joe Cain - 2009 - Journal of the History of Biology 42 (4):621 - 648.
    I propose we abandon the unit concept of "the evolutionary synthesis". There was much more to evolutionary studies in the 1920s and 1930s than is suggested in our commonplace narratives of this object in history. Instead, four organising threads capture much of evolutionary studies at this time. First, the nature of species and the process of speciation were dominating, unifying subjects. Second, research into these subjects developed along four main lines, or problem complexes: variation, divergence, isolation, and selection. Some (...)
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  32.  73
    Creative synthesis and philosophic method.Charles Hartshorne - 1970 - La Salle, Ill.,: Open Court Pub. Co..
    A philosophy of shared creative experience.--What metaphysics is.--Present prospects for metaphysics.--Abstraction: the question of nominalism.--Some principles of method.--A logic of ultimate contrasts.--Wittgenstein and Tillich: reflections on metaphysics and language.--Non-restrictive existential statements.--Events, individuals and predication: a defence of event pluralism--The prejudice in favor of symmetry.--The principle of dual transcendence and its basis in ordinary language.--Can there be a priori knowledge of what exists?--Ideas of God: an exhaustive division.--Six theistic proofs.--Sensory qualities and ordinary language.--The aesthetic matrix of value.
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  33.  8
    Synthesis: Zur Konjunktur Eines Philosophischen Begriffs in Wissenschaft Und Technik.Gabriele Gramelsberger, Peter Bexte & Werner Kogge (eds.) - 2013 - Bielefeld: Transcript Verlag.
    Re-Design des Lebens: Wissenschaft und Technik rekurrieren zunehmend auf das Prinzip des Synthetischen. Die Synthetische Chemie und seit Neuestem die Synthetische Biologie zielen auf ein Zusammensetzen von Bausteinen, um neue Entitäten zu designen - von Molekülen bis hin zu Stoffwechselnetzwerken in Organismen. Dieser Band unternimmt wissenschaftsphilosophische und -historische Annäherungen an das Prinzip der Syn-Thesis. Die Beiträge fragen: Welche Konstruktionsbedingungen realisieren die synthetischen Wissenschaften? Wie ist das Verhältnis zu analytischen Methoden? Und wo liegen die Grenzen technischer Synthesis?
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  34.  13
    The synthesis and the synthetic theory.John Beatty - 1986 - In William Bechtel (ed.), Integrating Scientific Disciplines. University of Chicago Press. pp. 125--135.
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  35.  66
    Figurative Synthesis, Spatial Unity and the Possibility of Perceptual Knowledge.Dennis Schulting - 2017 - In Kant's Radical Subjectivism. Perspectives on the Transcendental Deduction. London, UK: Palgrave. pp. 295-337.
  36.  33
    Towards Synthesis of Biology and Semiotics.Alexei Sharov, Timo Maran & Morten Tønnessen - 2015 - Biosemiotics 8 (1):1-7.
    The journal Biosemiotics was envisioned by its founding editor, Marcello Barbieri, as a major periodical for interdisciplinary papers that integrate biology and semiotics. Since 2008 the journal has published 21 issues, including special issues on crucial problems such as the semiotics of perception, origins of mind, code biology, biohermeneutics, biosemiotic analysis of information and chance. The impact factor of the journal does not fully describe the significance of this journal, because the discipline of biosemiotics is young and remains in its (...)
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  37. The Synthesis of Logic Programs From Inductive Proofs.Alan Bundy, Smaill & Geraint A. Wiggins - 1990 - Department of Artificial Intelligence, University of Edinburgh.
     
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  38. Creative Synthesis: A Process Interpretation of Causality.Santiago Sia - 2007 - Philosophia: International Journal of Philosophy (Philippine e-journal) 36 (2).
    Creative synthesis, an interpretation of causality developed by Charles Hartshorne in his philosophical works, attempts to provide a way out of the determinism-indeterminism debate in philosophical discussions. At the same time, it is grounded in contemporary physics which regards effects as statistical averages rather than fully predictable results of the action of causes. This paper will seek to contextualise this interpretation of causality within the metaphysics of Charles Hartshorne, establish its basis and develop its implications. The resulting philosophy of (...)
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  39.  5
    The synthesis of a neural system to explain consciousness: neural circuits, neural systems and wakefulness for non-specialists.John Robert Burger - 2014 - Eugene, Oregon: Luminare Press.
    The human brain is the first computer to which all others are compared. Yet we know painfully little about how a brain accomplishes its peculiar computations. In particular, consciousness is at once familiar and mysterious, and needs to be understood both for science and for medicine. Boldly, but gently this book introduces a reader to the neural circuitry that achieves consciousness. This amazing interconnection enables consciousness to flow like a stream, intimately relevant to the outside world; and for this to (...)
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  40.  42
    Synthesis and the content of pure concepts in Kant's first.J. Michael Young - 1994 - Journal of the History of Philosophy 32 (3):331-357.
  41.  30
    Image synthesis from an ethical perspective.Oliver Bendel - forthcoming - AI and Society:1-10.
    Generative AI has gained a lot of attention in society, business, and science. This trend has increased since 2018, and the big breakthrough came in 2022. In particular, AI-based text and image generators are now widely used. This raises a variety of ethical issues. The present paper first gives an introduction to generative AI and then to applied ethics in this context. Three specific image generators are presented: DALL-E 2, Stable Diffusion, and Midjourney. The author goes into technical details and (...)
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  42.  64
    Figurative Synthesis and Synthetic a Priori Knowledge.Yaron M. Senderowicz - 2004 - Review of Metaphysics 57 (4):755-785.
    KANT’S GOAL IN THE TRANSCENDENTAL DEDUCTION was to demonstrate that the categories are applicable to objects of sensible intuition. He carried out this task by disclosing the necessity of a transcendental synthesis. In the Transcendental Deduction in the second edition of the Critique of Pure Reason transcendental synthesis has two subspecies: synthesis intellectualis and synthesis speciosa. The distinction between the two types of transcendental synthesis is also mirrored in the structure of the proof of the (...)
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  43.  31
    Organic Synthesis and the Unification of Chemistry—A Reappraisal.John Hedley Brooke - 1971 - British Journal for the History of Science 5 (4):363-392.
    Proclaiming Louis Pasteur as the “Founder of Stereochemistry”, the distinguished Scottish chemist, Crum Brown, addressing a late nineteenth-century audience of Edinburgh savants, drew attention—as Pasteur had incessantly done—to the intimate relationship between living organisms and the optical activity of compounds sustaining them. It seemed to Crum Brown “that we must go very much further down in the scale of animate existence than Buridan's ass, before we come to a being incapable of giving practical expression to a distinct preference for one (...)
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  44. Nonlinear synthesis and co‐evolution of complex systems.Helena Knyazeva & Sergei P. Kurdyumov - 2001 - World Futures 57 (3):239-261.
    Today a change is imperative in approaching global problems: what is needed is not arm-twisting and power politics, but searching for ways of co-evolution in the complex social and geopolitical systems of the world. The modern theory of self-organization of complex systems provides us with an understanding of the possible forms of coexistence of heterogeneous social and geopolitical structures at different stages of development regarding the different paths of their sustainable co-evolutionary development. The theory argues that the evolutionary channel to (...)
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  45. Chemical synthesis: Complexity, similarity, natural kinds, and the evolutionof a 'logic'.Stuart Rosenfeld & Nalini Bhushan - 2000 - In Nalini Bhushan & Stuart M. Rosenfeld (eds.), Of Minds and Molecules: New Philosophical Perspectives on Chemistry. Oxford University Press. pp. 187-207.
     
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  46.  10
    Is meta‐synthesis turning rich descriptions into thin reductions? A criticism of meta‐aggregation as a form of qualitative synthesis.Elisabeth Bergdahl - 2019 - Nursing Inquiry 26 (1):e12273.
    Meta‐synthesis of qualitative research can be an important way to consolidate and grow nursing knowledge and theory. However, from recent readings of such works in the nursing literature, one can observe that there is increasing use of meta‐synthesis being used as a way to simply aggregate qualitative research findings in a manner claimed to be similar to quantitative meta‐research while also remaining compatible with the qualitative research tradition. The aim of this paper is to discuss whether this meta‐aggregation (...)
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  47. Synthesis, Cognitive Normativity, and the Meaning of Kant’s Question, ‘How are synthetic cognitions a priori possible?’.R. Lanier Anderson - 2001 - European Journal of Philosophy 9 (3):275–305.
  48.  23
    Synthesis, Dynamis, Praxis: Critical Theory’s ongoing search for a concept of society.Peter Schulz & Hartmut Rosa - 2023 - European Journal of Social Theory 26 (2):201-214.
    From its beginning, Critical Theory aimed to explore the laws governing social life as a formational totality and the forces shaping and driving its historical evolution. So the attempt to develop a comprehensive conception of ‘society’ encompassing both its structural as well as its cultural components can be considered one of the defining hallmarks of Critical Theory through all its theoretical and generational variations. But what, then, is Critical Theory’s conception of society? To answer this question, the authors make use (...)
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  49.  25
    Synthesis and analysis: Jean Nicod as a mediator between Bergson and Russell.Ties van Gemert - forthcoming - British Journal for the History of Philosophy:1-24.
    This paper presents Jean Nicod (1893–1924) as a mediator in the dispute between Bergson and Russell. In La géométrie dans le monde sensible (1924), Nicod extensively discusses Bergson’s epistemology focusing on those aspects that Russell critically discusses in The Philosophy of Henri Bergson (1912) and Our Knowledge of the External World (1914). His aim is to establish a middle ground between synthesis and analysis: to show how most of the disagreements between Bergson and Russell can be resolved without compromising (...)
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  50.  38
    Synthesis in the human evolutionary behavioural sciences.Rebecca Sear, David W. Lawson & Thomas E. Dickins - unknown
    Over the last three decades, the application of evolutionary theory to the human sciences has shown remarkable growth. This growth has also been characterised by a ‘splitting’ process, with the emergence of distinct sub-disciplines, most notably: Human Behavioural Ecology (HBE), Evolutionary Psychology (EP) and studies of Cultural Evolution (CE). Multiple applications of evolutionary ideas to the human sciences are undoubtedly a good thing, demonstrating the usefulness of this approach to human affairs. Nevertheless, this fracture has been associated with considerable tension, (...)
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