Results for 'Alexei Evsikov'

277 found
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  1. The Representation of Protein Complexes in the Protein Ontology.Carol Bult, Harold Drabkin, Alexei Evsikov, Darren Natale, Cecilia Arighi, Natalia Roberts, Alan Ruttenberg, Peter D’Eustachio, Barry Smith, Judith Blake & Cathy Wu - 2011 - BMC Bioinformatics 12 (371):1-11.
    Representing species-specific proteins and protein complexes in ontologies that are both human and machine-readable facilitates the retrieval, analysis, and interpretation of genome-scale data sets. Although existing protin-centric informatics resources provide the biomedical research community with well-curated compendia of protein sequence and structure, these resources lack formal ontological representations of the relationships among the proteins themselves. The Protein Ontology (PRO) Consortium is filling this informatics resource gap by developing ontological representations and relationships among proteins and their variants and modified forms. Because (...)
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  2. The Protein Ontology: A Structured Representation of Protein Forms and Complexes.Darren Natale, Cecilia N. Arighi, Winona C. Barker, Judith A. Blake, Carol J. Bult, Michael Caudy, Harold J. Drabkin, Peter D’Eustachio, Alexei V. Evsikov, Hongzhan Huang, Jules Nchoutmboube, Natalia V. Roberts, Barry Smith, Jian Zhang & Cathy H. Wu - 2011 - Nucleic Acids Research 39 (1):D539-D545.
    The Protein Ontology (PRO) provides a formal, logically-based classification of specific protein classes including structured representations of protein isoforms, variants and modified forms. Initially focused on proteins found in human, mouse and Escherichia coli, PRO now includes representations of protein complexes. The PRO Consortium works in concert with the developers of other biomedical ontologies and protein knowledge bases to provide the ability to formally organize and integrate representations of precise protein forms so as to enhance accessibility to results of protein (...)
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  3. Protein-Centric Connection of Biomedical Knowledge: Protein Ontology Research and Annotation Tools.Cecilia N. Arighi, Darren A. Natale, Judith A. Blake, Carol J. Bult, Michael Caudy, Alexander D. Diehl, Harold J. Drabkin, Peter D'Eustachio, Alexei Evsikov, Hongzhan Huang, Barry Smith & Others - 2011 - In Proceedings of the 2nd International Conference on Biomedical Ontology. Buffalo, NY: NCOR. pp. 285-287.
    The Protein Ontology (PRO) web resource provides an integrative framework for protein-centric exploration and enables specific and precise annotation of proteins and protein complexes based on PRO. Functionalities include: browsing, searching and retrieving, terms, displaying selected terms in OBO or OWL format, and supporting URIs. In addition, the PRO website offers multiple ways for the user to request, submit, or modify terms and/or annotation. We will demonstrate the use of these tools for protein research and annotation.
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  4. A Fiduciary Argument Against Stakeholder Theory.Alexei M. Marcoux - 2003 - Business Ethics Quarterly 13 (1):1-24.
    Critics attack normative ethical stakeholder theory for failing to recognize the special moral status of shareholders that justifiesthe fiduciary duties owed to them at law by managers. Stakeholder theorists reply that there is nothing morally significant about shareholders that can underwrite those fiduciary duties. I advance an argument that seeks to demonstrate both the special moral status of shareholders in a firm and the concomitant moral inadequacy of stakeholder theory. I argue that (i) if some relations morally requirefiduciary duties, and (...)
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  5.  36
    Freeman and Evan: Stakeholder Theory in the Original Position.Alexei M. Marcoux - 1999 - Business Ethics Quarterly 9 (2):207-224.
    We argue that the Rawlsian social contract argument advanced for stakeholder theory by R. Edward Freeman, writing alone and with William M. Evan, fails in three main ways. First, it is true to Rawls in neither form, nor purpose, nor the level of knowledge (or ignorance) required to motivate the veil of ignorance. Second, it fails to tailor the veil of ignorance to the fairness conditions that are required to solve the moral problem that Freeman and Evan set out to (...)
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  6. Philosophical Foundations of Effective Field Theories.Sébastien Rivat & Alexei Grinbaum - 2020 - European Physical Journal A 56 (3).
    This survey covers some of the main philosophical debates raised by the framework of effective field theories during the last decades. It is centered on three issues: whether effective field theories underpin a specific realist picture of the world, whether they support an anti-reductionist picture of physics, and whether they provide reasons to give up the ultimate aspiration of formulating a final and complete physical theory. Reviewing the past and current literature, we argue that effective field theories do not give (...)
     
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  7.  23
    Protosemiosis: Agency with Reduced Representation Capacity.Alexei A. Sharov & Tommi Vehkavaara - 2015 - Biosemiotics 8 (1):103-123.
    Life has semiotic nature; and as life forms differ in their complexity, functionality, and adaptability, we assume that forms of semiosis also vary accordingly. Here we propose a criterion to distinguish between the primitive kind of semiosis, which we call “protosemiosis” from the advanced kind of semiosis, or “eusemiosis”. In protosemiosis, agents associate signs directly with actions without considering objects, whereas in eusemiosis, agents associate signs with objects and only then possibly with actions. Protosemiosis started from the origin of life, (...)
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  8. Ethics in Robotics Research: CERNA Recommendations.Alexei Grinbaum & Raja Chatila - 2017 - IEEE Robotics and Automation Magazine (99):1-8.
    This article summarizes the recommendations concerning robotics as issued by the Commission for the Ethics of Research in Information Sciences and Technologies (CERNA), the French advisory commission for the ethics of information and communication technology (ICT) research. Robotics has numerous applications in which its role can be overwhelming and may lead to unexpected consequences. In this rapidly evolving technological environment, CERNA does not set novel ethical standards but seeks to make ethical deliberation inseparable from scientific activity. Additionally, it provides tools (...)
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  9.  22
    Evolution of Natural Agents: Preservation, Advance, and Emergence of Functional Information.Alexei A. Sharov - 2016 - Biosemiotics 9 (1):103-120.
    Biological evolution is often viewed narrowly as a change of morphology or allele frequency in a sequence of generations. Here I pursue an alternative informational concept of evolution, as preservation, advance, and emergence of functional information in natural agents. Functional information is a network of signs that are used by agents to preserve and regulate their functions. Functional information is preserved in evolution via complex interplay of copying and construction processes: the digital components are copied, whereas interpreting subagents together with (...)
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  10.  31
    Recognition and Trust: Hegel and Confucius on the Normative Basis of Ethical Life.Alexei Procyshyn & Mario Wenning - 2019 - Dao: A Journal of Comparative Philosophy 18 (1):1-22.
    This essay offers a comparative analysis of the notion of trust in Hegel and Confucius. It shows that Hegel’s two senses of trust depend upon his theory of recognition and recognitive struggle. The competitive thrust of Hegel’s account of trust, it argues, introduces a series of problems that cannot be adequately resolved within his theory, since it presupposes the kinds of trusting relations—self-, intersubjective- and world-trust—that it purports to explain. This essay then turns to the Confucian notions of xin 心 (...)
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  11.  23
    Comprehending the Semiosis of Evolution.Alexei Sharov, Timo Maran & Morten Tønnessen - 2016 - Biosemiotics 9 (1):1-6.
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  12.  8
    Alexei F. Losev and the Kant Society.Elena A. Takho-Godi - 2018 - Russian Studies in Philosophy 56 (6):498-503.
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  13.  38
    Business Ethics.Alexei Marcoux - 2008 - Stanford Encyclopedia of Philosophy.
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  14.  15
    Evolutionary Biosemiotics and Multilevel Construction Networks.Alexei A. Sharov - 2016 - Biosemiotics 9 (3):399-416.
    In contrast to the traditional relational semiotics, biosemiotics decisively deviates towards dynamical aspects of signs at the evolutionary and developmental time scales. The analysis of sign dynamics requires constructivism to explain how new components such as subagents, sensors, effectors, and interpretation networks are produced by developing and evolving organisms. Semiotic networks that include signs, tools, and subagents are multilevel, and this feature supports the plasticity, robustness, and evolvability of organisms. The origin of life is described here as the emergence of (...)
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  15. Reconstruction of Quantum Theory.Alexei Grinbaum - 2007 - British Journal for the Philosophy of Science 58 (3):387 - 408.
    What belongs to quantum theory is no more than what is needed for its derivation. Keeping to this maxim, we record a paradigmatic shift in the foundations of quantum mechanics, where the focus has recently moved from interpreting to reconstructing quantum theory. Several historic and contemporary reconstructions are analyzed, including the work of Hardy, Rovelli, and Clifton, Bub and Halvorson. We conclude by discussing the importance of a novel concept of intentionally incomplete reconstruction.
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  16.  13
    Towards Synthesis of Biology and Semiotics.Alexei Sharov, Timo Maran & Morten Tønnessen - 2015 - Biosemiotics 8 (1):1-7.
    The journal Biosemiotics was envisioned by its founding editor, Marcello Barbieri, as a major periodical for interdisciplinary papers that integrate biology and semiotics. Since 2008 the journal has published 21 issues, including special issues on crucial problems such as the semiotics of perception, origins of mind, code biology, biohermeneutics, biosemiotic analysis of information and chance. The impact factor of the journal does not fully describe the significance of this journal, because the discipline of biosemiotics is young and remains in its (...)
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  17.  8
    Alexei Sewertzoff and Adolf Naef: Revising Haeckel’s Biogenetic Law.Georgy S. Levit, Uwe Hossfeld & Lennart Olsson - 2015 - History and Philosophy of the Life Sciences 36 (3):357-370.
    Ernst Haeckel formulated his biogenetic law, famously stating that ontogeny recapitulates phylogeny, in 1872. The Russian evolutionist Alexei Sewertzoff, and the Swiss-born zoologist Adolf Naef were among those who revised Haeckel’s law, thus changing the course of evolutionary theory and of developmental biology. Although Sewertzoff and Naef approached the problem in a similar way and formulated similar hypotheses at a purely descriptive level, their theoretical viewpoints were crucially different. While Sewertzoff laid the foundations for a Darwinian evolutionary morphology and (...)
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  18.  20
    The Conditions of Immanent Critique.Alexei Procyshyn - 2022 - Critical Horizons 23 (1):22-43.
    ABSTRACT This article contributes to methodological debates in contemporary critical theory regarding the scope and features of immanent critique. I spell out the philosophical commitments presupposed by this approach to criticism and identify its basic features by comparing it with more recognizable argumentative or interpretative strategies. This comparison yields three immanent-critical requirements – for inherence, contradiction, and access – which bring into relief the heuristic and ampliative character of immanent criticism. Yet, these requirements also imply that “immanent critique” is not (...)
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  19.  74
    Fundamental Principles and Mechanisms of the Conscious Self.Alexei V. Samsonovich & Lynn Nadel - 2005 - Cortex. Special Issue 41 (5):669-689.
  20.  20
    Beyond Rasiowan Systems: Unital Deductive Systems.Alexei Y. Muravitsky - 2014 - Logica Universalis 8 (1):83-102.
    We deal with monotone structural deductive systems in an unspecified propositional language \ . These systems fall into several overlapping classes, forming a hierarchy. Along with well-known classes of deductive systems such as those of implicative, Fregean and equivalential systems, we consider new classes of unital and weakly implicative systems. The latter class is auxiliary, while the former is central in our discussion. Our analysis of unital systems leads to the concept of Lindenbaum–Tarski algebra which, under some natural conditions, is (...)
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  21. Biosemiotics: A Functional-Evolutionary Approach to the Analysis of the Sense of Information.Alexei A. Sharov - forthcoming - Biosemiotics: The Semiotic Web.
     
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  22.  7
    Minimal Mind.Alexei A. Sharov - 2013 - In Liz Swan (ed.), Origins of Mind. pp. 343--360.
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  23.  23
    Umwelt-Theory and Pragmatism.Alexei Sharov - 2001 - Semiotica 2001 (134).
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  24.  9
    Evolution of the Modes of Systematization of Mathematical Knowledge.Alexei Barabashev - 2000 - In Emily Grosholz & Herbert Breger (eds.), The Growth of Mathematical Knowledge. Kluwer Academic Publishers. pp. 315--329.
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  25.  12
    Social Coordination or Social Cooperation? Ambiguities of Haslanger’s Approach to Social Life.Alexei Procyshyn - 2020 - Tandf: Australasian Philosophical Review 3 (1):104-108.
    Volume 3, Issue 1, March 2019, Page 104-108.
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  26.  80
    Which Fine-Tuning Arguments Are Fine?Alexei Grinbaum - 2012 - Foundations of Physics 42 (5):615-631.
    Fine-tuning arguments are a frequent find in the literature on quantum field theory. They are based on naturalness—an aesthetic criterion that was given a precise definition in the debates on the Higgs mechanism. We follow the history of such definitions and of their application at the scale of electroweak symmetry breaking. They give rise to a special interpretation of probability, which we call Gedankenfrequency. Finally, we show that the argument from naturalness has been extended to comparing different models of the (...)
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  27.  52
    A Counterintuitive Argument for Résumé Embellishment.Alexei M. Marcoux - 2006 - Journal of Business Ethics 63 (2):183-194.
    Applied ethicists say little about résumé embellishment. Presumably, this is so because résumé embellishment seems obviously wrong; an instance of ordinary lying, familiar moral prohibitions against which cover the case completely. Analysis of résumé embellishment merely as ordinary lying overlooks its collective action aspects. Taking account of those aspects and their implications, I argue on consequentialist grounds that, given some plausible background conditions, a limited form of résumé embellishment is morally permissible. This outcome is a particular instantiation of a more (...)
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  28.  34
    The Informational Reality Commentary on Igor Aleksander and Helen Morton's — "Aristotle's Laptop: The Discovery of Our Informational Mind".Alexei V. Samsonovich - 2014 - International Journal of Machine Consciousness 6 (1):49-53.
    Alexei V. Samsonovich, Int. J. Mach. Conscious., 06, 49 (2014). DOI: 10.1142/S1793843014400083.
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  29.  8
    Alexei Ratmansky’s Serenade After Plato’s Symposium.Julie C. Van Camp - 2017 - The Philosophers' Magazine 76:105-107.
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  30.  3
    The Ethics of Business: A Concise Introduction.Al Gini & Alexei Marcoux - 2011 - Rowman & Littlefield Publishers.
    In a field dominated by books that focus exclusively on the perspective of business in large corporations or that assume that business has a moral deficiency in need of reform, Al Gini and Alexei Marcoux offers students and business people alike a concise guide to what everyone ought to do when doing business. Where other books are organized topically, Gini and Marcoux look at the moral features of business that recur across topical areas, stressing the considerations that bear on (...)
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  31.  18
    Toward a Semantic General Theory of Everything.Alexei V. Samsonovich, Rebecca F. Goldin & Giorgio A. Ascoli - 2010 - Complexity 15 (4):NA-NA.
  32. Byzantine Church Decoration and the Great Schism of 1054.Alexei Lidov - 1998 - Byzantion 68 (2):381-405.
    De nouveaux thèmes théologiques apparaissent dans le décor des églises byzantines vers le milieu du 11e siècle. Ils sont nés d'un programme spécifique probablement lié au schisme de 1054. L'A. étudie les thèmes liturgiques centraux de l'Eglise orthodoxe de cette époque en prêtant une attention particulière au symbolisme des thèmes et à la date de leur émergence au sein du décor de l'église comme par exemple la communion des apôtres, les évêques officiant, le Christ comme Grand Prêtre consacrant l'Eglise ou (...)
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  33.  10
    The Amalgamation Spectrum.John T. Baldwin, Alexei Kolesnikov & Saharon Shelah - 2009 - Journal of Symbolic Logic 74 (3):914-928.
    We study when classes can have the disjoint amalgamation property for a proper initial segment of cardinals. Theorem A For every natural number k, there is a class $K_k $ defined by a sentence in $L_{\omega 1.\omega } $ that has no models of cardinality greater than $ \supset _{k - 1} $ , but $K_k $ has the disjoint amalgamation property on models of cardinality less than or equal to $\mathfrak{N}_{k - 3} $ and has models of cardinality $\mathfrak{N}_{k (...)
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  34.  23
    Evolution of Sex Differences in Lifespan and Aging: Causes and Constraints.Alexei A. Maklakov & Virpi Lummaa - 2013 - Bioessays 35 (8):717-724.
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  35.  56
    Reconstructing Instead of Interpreting Quantum Theory.Alexei Grinbaum - 2007 - Philosophy of Science 74 (5):761-774.
    A paradigmatic shift in the foundations of quantum mechanics is recorded, from interpreting to reconstructing quantum theory. Examples of reconstruction are analyzed, and conceptual foundations of the information-theoretic reconstruction developed. A concept of intentionally incomplete reconstruction is introduced to mark the novel content of research in the foundation of quantum theory. ‡Many thanks to Lucien Hardy, Jeff Bub and Bill Demopoulos for their comments. This research was supported through the ANR grant ANR-06-BLAN-0348-01. Part of this research was held at the (...)
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  36.  34
    The Mental State Formalism of Gmu-Bica.Alexei V. Samsonovich, Kenneth A. de Jong & Anastasia Kitsantas - 2009 - International Journal of Machine Consciousness 1 (1):111-130.
  37.  7
    How Device-Independent Approaches Change the Meaning of Physical Theory.Alexei Grinbaum - 2017 - Studies in History and Philosophy of Science Part B: Studies in History and Philosophy of Modern Physics 58:22-30.
  38.  8
    The Catapetasma of Hagia Sophia and the Phenomenon of Byzantine Installations.Alexei Lidov - 2014 - Convivium 1 (2):40-57.
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  39.  12
    Snipers, Stalkers, and Nibblers: Online Auction Business Ethics. [REVIEW]Alexei M. Marcoux - 2003 - Journal of Business Ethics 46 (2):163 - 173.
    Spirited disagreement exists among online auction participants over the ethics of sniping: delaying one's bid until the closing seconds of an online auction. Through analysis of the structural features of online auctions and by deploying Rawls's (1955) distinction between justifying an action under a practice and justifying the practice itself, I argue that: (i) the disagreement is better conceived as one over the ethics of online auction hosting (and therefore, over business ethics) than over the ethics of online auction participation; (...)
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  40. From Cybernetics to Semiotics in Biology.Alexei A. Sharov - 1998 - Semiotica 120 (3-4):403-419.
     
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  41.  7
    Composite Agency: Semiotics of Modularity and Guiding Interactions.Alexei A. Sharov - 2017 - Biosemiotics 10 (2):157-178.
    Principles of constructivism are used here to explore how organisms develop tools, subagents, scaffolds, signs, and adaptations. Here I discuss reasons why organisms have composite nature and include diverse subagents that interact in partially cooperating and partially conflicting ways. Such modularity is necessary for efficient and robust functionality, including mutual construction and adaptability at various time scales. Subagents interact via material and semiotic relations, some of which force or prescribe actions of partners. Other interactions, which I call “guiding”, do not (...)
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  42.  23
    Nourishment and the Biosphere.Alexei A. Pokrovski & R. Scott Walker - 1979 - Diogenes 27 (107):120-127.
  43.  8
    Information Synthesis in Cortical Areas as an Important Link in Brain Mechanisms of Mind.Alexei M. Ivanitsky - 1995 - Behavioral and Brain Sciences 18 (4):686-687.
    To explore the mechanism of sensation correlations between EP component amplitude and signal detection indices were studied. The time of sensation coincided with the peak latency of those EP components that showed a correlation with both indices. The components presumably reflected information synthesis in projection cortical neurons. A mechanism providing the synthesis process is proposed.
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  44.  5
    Elementary Equivalence of Rings with Finitely Generated Additive Groups.Alexei G. Myasnikov, Francis Oger & Mahmood Sohrabi - 2018 - Annals of Pure and Applied Logic 169 (6):514-522.
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  45.  26
    Living with Uncertainty: Toward the Ongoing Normative Assessment of Nanotechnology.Alexei Grinbaum & Jean-Pierre Dupuy - 2004 - Techné: Research in Philosophy and Technology 8 (2):4-25.
  46.  8
    The Origin and Evolution of Signs.Alexei A. Sharov - 1999 - Semiotica 127 (1-4):521-536.
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  47.  20
    Manifest Reason: Walter Benjamin on Violence and Collective Agency.Alexei Procyshyn - 2014 - Constellations 21 (3):390-400.
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  48.  15
    Groups Elementarily Equivalent to a Free Nilpotent Group of Finite Rank.Alexei G. Myasnikov & Mahmood Sohrabi - 2011 - Annals of Pure and Applied Logic 162 (11):916-933.
    In this paper, we give a complete algebraic description of groups elementarily equivalent to the P. Hall completion of a given free nilpotent group of finite rank over an arbitrary binomial domain. In particular, we characterize all groups elementarily equivalent to a free nilpotent group of finite rank.
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  49.  33
    The Effectiveness of Mathematics in Physics of the Unknown.Alexei Grinbaum - 2019 - Synthese 196 (3):973-989.
    If physics is a science that unveils the fundamental laws of nature, then the appearance of mathematical concepts in its language can be surprising or even mysterious. This was Eugene Wigner’s argument in 1960. I show that another approach to physical theory accommodates mathematics in a perfectly reasonable way. To explore unknown processes or phenomena, one builds a theory from fundamental principles, employing them as constraints within a general mathematical framework. The rise of such theories of the unknown, which I (...)
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  50.  4
    Russian Silver Age Philosophy of War: Main Features.Alexei A. Skvortsov - 2021 - Russian Journal of Philosophical Sciences 63 (11):91-103.
    The article discusses the main features of the Russian philosophy of war that developed in the first third of the 20th century. The author shows that in Russia, the philosophy of war did not develop as a separate broad line of research but limited itself to only a few meaningful, but rather brief, experiments. Nevertheless, many Russian philosophers left deep, well-founded reasoning about war, which can be reconstructed as a consistent system of views. One of its features is the shift (...)
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