Results for 'allosteric network'

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  1.  6
    Driving Protein Conformational Cycles in Physiology and Disease: “Frustrated” Amino Acid Interaction Networks Define Dynamic Energy Landscapes.Rebecca N. D'Amico, Alec M. Murray & David D. Boehr - 2020 - Bioessays 42 (9):2000092.
    A general framework by which dynamic interactions within a protein will promote the necessary series of structural changes, or “conformational cycle,” required for function is proposed. It is suggested that the free‐energy landscape of a protein is biased toward this conformational cycle. Fluctuations into higher energy, although thermally accessible, conformations drive the conformational cycle forward. The amino acid interaction network is defined as those intraprotein interactions that contribute most to the free‐energy landscape. Some network connections are consistent in (...)
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  2.  9
    DNA damage and cell cycle regulation of ribonucleotide reductase.Stephen J. Elledge, Zheng Zhou, James B. Allen & Tony A. Navas - 1993 - Bioessays 15 (5):333-339.
    Ribonucleotide reductase (RNR) catalyzes the rate limiting step in the production of deoxyribonucleotides needed for DNA synthesis. In addition to the well documented allosteric regulation, the synthesis of the enzyme is also tightly regulated at the level of transcription. mRNAs for both subunits are cell cycle regulated and inducible by DNA damage in all organisms examined, including E. coli, S. cerevisiae and H. sapiens. This DNA damage regulation is thought to provide a metabolic state that facilitates DNA replicational repair (...)
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  3.  3
    Hormones, second messengers and the reversible phosphorylation of proteins: An overview.Philip Cohen - 1985 - Bioessays 2 (2):63-68.
    The interconversion of key regulatory proteins between phosphorylated and dephosphorylated forms is an extremely versatile mechanism for reversible altering their activities, and in mammalian cells may be almost as common as allosteric regulation. It is now evident that protein phosphorylation is the basis of a complex network of interlocking systems which allow a variety of hormones and other extracellular signals, acting through just a few second messengers to coordinate biochemical functions.
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  4. Soaring salaries say something about America.Pbh Network - 2019 - In Marty Gitlin (ed.), Athletes, ethics, and morality. New York: Greenhaven Publishing.
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  5. Www. Nmw. ac. uk/change2001.Uk Environmental Change Network - 2001 - Science and Society 17:20.
     
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  6.  8
    Affordances of the Networked Image.Centre for the Study of the Networked Image, Geoff Cox, Annet Dekker, Andrew Dewdney & Katrina Sluis - 2021 - Nordic Journal of Aesthetics 30 (61-62):40-45.
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  7. Information, Rights, and Social Justice.Network Design - forthcoming - Ethics, Information, and Technology: Readings.
     
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  8.  11
    Recommendations for the Investigation of Research Misconduct: ENRIO Handbook.European Network Of Research Integrity Offices & The European Network Of Research Ethics And Research Integrity - 2019 - Jahrbuch für Wissenschaft Und Ethik 24 (1):425-460.
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  9. Five reasons for the use of network analysis in the history of economics.Catherine Https://Orcidorg Herfeld & Malte Https://Orcidorg Doehne - 2018 - .
    Network analysis is increasingly appreciated as a methodology in the social sciences. In recent years, it is also receiving attention among historians of science. History of economics is no exception in that researchers have begun to use network analysis to study a variety of topics, including collaborations and interactions in scientific communities, the spread of economic theories within and across fields, or the formation of new specialties in the discipline of economics. Against this backdrop, a debate is emerging (...)
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  10.  4
    Business Ethics in a New Europe.John Mahoney, Elizabeth Vallance & European Business Ethics Network - 1992 - Springer Verlag.
    The new business opportunities and prospects emerging in Europe within the Common Market and other Western and European countries also raise important ethical challenges. This work comprises a collection of ethical insights to enhance the conduct of business in an evolving Europe.
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  11.  3
    “Tt47 [1l3.Voltage Controlled Frequency & Dependent Network - unknown - Hermes 330:86.
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  12.  28
    Mechanistic and topological explanations in medicine: the case of medical genetics and network medicine.Marie Darrason - 2018 - Synthese 195 (1):147-173.
    Medical explanations have often been thought on the model of biological ones and are frequently defined as mechanistic explanations of a biological dysfunction. In this paper, I argue that topological explanations, which have been described in ecology or in cognitive sciences, can also be found in medicine and I discuss the relationships between mechanistic and topological explanations in medicine, through the example of network medicine and medical genetics. Network medicine is a recent discipline that relies on the analysis (...)
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  13.  7
    How the Size of Our Social Network Influences Our Semantic Skills.Shiri Lev-Ari - 2016 - Cognitive Science 40 (8):2050-2064.
    People differ in the size of their social network, and thus in the properties of the linguistic input they receive. This article examines whether differences in social network size influence individuals’ linguistic skills in their native language, focusing on global comprehension of evaluative language. Study 1 exploits the natural variation in social network size and shows that individuals with larger social networks are better at understanding the valence of restaurant reviews. Study 2 manipulated social network size (...)
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  14. A cortical network for semantics: (de)constructing the N400.E. Lau, C. Phillips & D. Poeppel - 2008 - Nature Reviews Neuroscience 9:920-933.
    Measuring event-related potentials (ERPs) has been fundamental to our understanding of how language is encoded in the brain. One particular ERP response, the N400 response, has been especially influential as an index of lexical and semantic processing. However, there remains a lack of consensus on the interpretation of this component. Resolving this issue has important consequences for neural models of language comprehension. Here we show that evidence bearing on where the N400 response is generated provides key insights into what it (...)
     
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  15.  14
    Intelligent Defect Identification Based on PECT Signals and an Optimized Two-Dimensional Deep Convolutional Network.Baoling Liu, Jun He, Xiaocui Yuan, Huiling Hu, Xuan Zeng, Zhifang Zhu & Jie Peng - 2020 - Complexity 2020:1-18.
    Accurate and rapid defect identification based on pulsed eddy current testing plays an important role in the structural integrity and health monitoring of in-service equipment in the renewable energy system. However, in conventional data-driven defect identification methods, the signal feature extraction is time consuming and requires expert experience. To avoid the difficulty of manual feature extraction and overcome the shortcomings of the classic deep convolutional network, such as large memory and high computational cost, an intelligent defect recognition pipeline based (...)
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  16.  3
    Swimming Training Evaluation Method Based on Convolutional Neural Network.Lei Zhang & Wei Liu - 2021 - Complexity 2021:1-12.
    By investigating the status quo of the swimming training market in a certain area, we can obtain information on the current development of the swimming training market in a certain area and study the laws of the development of the market so as to provide a theoretical basis for the development of the market. This paper designs an evaluation algorithm suitable for swimming training based on the improved AlexNet network. The algorithm model uses a 3 × 3 size convolution (...)
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  17.  20
    Temporal inductive path neural network for temporal knowledge graph reasoning.Hao Dong, Pengyang Wang, Meng Xiao, Zhiyuan Ning, Pengfei Wang & Yuanchun Zhou - 2024 - Artificial Intelligence 329 (C):104085.
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  18.  81
    Perceptual Learning (Network for Sensory Research/University of York Perceptual Learning Workshop, Question One).Kevin Connolly, Dylan Bianchi, Craig French, Lana Kuhle & Andy MacGregor - manuscript
    This is an excerpt of a report that highlights and explores five questions that arose from the Network for Sensory Research workshop on perceptual learning and perceptual recognition at the University of York in March, 2012. This portion of the report explores the question: What is perceptual learning?
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  19.  9
    Pandemic Dreams: Network Analysis of Dream Content During the COVID-19 Lockdown.Anu-Katriina Pesonen, Jari Lipsanen, Risto Halonen, Marko Elovainio, Nils Sandman, Juha-Matti Mäkelä, Minea Antila, Deni Béchard, Hanna M. Ollila & Liisa Kuula - 2020 - Frontiers in Psychology 11.
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  20.  40
    Engaging Communities to Strengthen Research Ethics in Low‐Income Settings: Selection and Perceptions of Members of a Network of Representatives in Coastal K enya.Dorcas M. Kamuya, Vicki Marsh, Francis K. Kombe, P. Wenzel Geissler & Sassy C. Molyneux - 2013 - Developing World Bioethics 13 (1):10-20.
    There is wide agreement that community engagement is important for many research types and settings, often including interaction with ‘representatives’ of communities. There is relatively little published experience of community engagement in international research settings, with available information focusing on Community Advisory Boards or Groups (CAB/CAGs), or variants of these, where CAB/G members often advise researchers on behalf of the communities they represent. In this paper we describe a network of community members (‘KEMRI Community Representatives’, or ‘KCRs’) linked to (...)
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  21.  5
    Network analyses of prepositional meaning: Mirroring whose mind—the linguist’s or the language user’s?Dominiek Sandra & Sally Rice - 1995 - Cognitive Linguistics 6 (1):89-130.
  22.  8
    Knowledge in a Social Network.Staffan Angere - unknown
    The purpose of this paper is to present a formal model of social net- works suitable for studying questions in social epistemology. We show how to use this model, in conjunction with a computer program for simulating groups of inquirers, to draw conclusions about the epistemological prop- erties of different social practices. This furnishes us with the beginnings of a systematic research program in social epistemology, from which to approach problems pertaining to epistemic value, optimal organization, and the dynamics of (...)
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  23.  6
    Resting-State Functional Connectivity in the Dorsal Attention Network Relates to Behavioral Performance in Spatial Attention Tasks and May Show Task-Related Adaptation.Björn Machner, Lara Braun, Jonathan Imholz, Philipp J. Koch, Thomas F. Münte, Christoph Helmchen & Andreas Sprenger - 2022 - Frontiers in Human Neuroscience 15.
    Between-subject variability in cognitive performance has been related to inter-individual differences in functional brain networks. Targeting the dorsal attention network we questioned whether resting-state functional connectivity within the DAN can predict individual performance in spatial attention tasks and whether there is short-term adaptation of DAN-FC in response to task engagement. Twenty-seven participants first underwent resting-state fMRI, they subsequently performed different tasks of spatial attention [including visual search ] and immediately afterwards received another rs-fMRI. Intra- and inter-hemispheric FC between core (...)
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  24.  46
    Algorithm and Simulation of Association Rules of Drug Relationship Based on Network Model.Hui Teng, Yukun Ma & Di Teng - 2020 - Complexity 2020:1-14.
    Studying drug relationships can provide deeper information for the construction and maintenance of biomedical databases and provide more important references for disease treatment and drug development. The research model has expanded from the previous focus on a certain drug to the systematic analysis of the pharmaceutical network formed between drugs. Network model is suitable for the study of the nonlinear relationship of the pharmaceutical relationship by modeling the data learning. Association rule mining is used to find the potential (...)
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  25.  5
    Ethics and Network Organizations.Robert A. Phillips - 2010 - Business Ethics Quarterly 20 (3):533-543.
    As value chains become longer with increases in outsourcing and subcontracting, the challenges of fixing responsibility become more difficult. Using concepts from the literature on social networks, this paper considers issues of diffusion of responsibility and plausible deniability in such relationships. Specifically, this paper isolates three sources of denial of – or defense against – attributions of responsibility: connection, control and knowledge. It goes on to consider the effects on network density and actor centrality as third parties (tertius illuminans) (...)
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  26.  6
    The Moment of Complexity: Emerging Network Culture.Mark C. Taylor - 2001 - Chicago: University of Chicago Press.
    "_The Moment of Complexity_ is a profoundly original work. In remarkable and insightful ways, Mark Taylor traces an entirely new way to view the evolution of our culture, detailing how information theory and the scientific concept of complexity can be used to understand recent developments in the arts and humanities. This book will ultimately be seen as a classic."-John L. Casti, Santa Fe Institute, author of _Gödel: A Life of Logic, the Mind, and Mathematics_ The science of complexity accounts for (...)
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  27.  6
    Motor Cortical Network Plasticity in Patients With Recurrent Brain Tumors.Lucia Bulubas, Nina Sardesh, Tavish Traut, Anne Findlay, Danielle Mizuiri, Susanne M. Honma, Sandro M. Krieg, Mitchel S. Berger, Srikantan S. Nagarajan & Phiroz E. Tarapore - 2020 - Frontiers in Human Neuroscience 14.
  28.  5
    Beyond brain regions: Network perspective of cognition–emotion interactions.Luiz Pessoa - 2012 - Behavioral and Brain Sciences 35 (3):158-159.
    Lindquist et al. provide a convincing case against what they call the locationist account of emotion. Their quantitative approach elegantly illustrates the shortcomings of this still-entrenched viewpoint. Here, I discuss how a network perspective will advance our understanding of structure-function mappings in general, and the relationship between emotion and cognition in the brain.
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  29.  8
    Functional organization and restoration of the brain motor-execution network after stroke and rehabilitation.Sahil Bajaj, Andrew J. Butler, Daniel Drake & Mukesh Dhamala - 2015 - Frontiers in Human Neuroscience 9:134070.
    Multiple cortical areas of the human brain motor system interact coherently in the low frequency range (< 0.1 Hz), even in the absence of explicit tasks. Following stroke, cortical interactions are functionally disturbed. How these interactions are affected and how the functional organization is regained from rehabilitative treatments as people begin to recover motor behaviors has not been systematically studied. We recorded the intrinsic functional magnetic resonance imaging (fMRI) signals from 30 participants: 17 young healthy controls and 13 aged stroke (...)
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  30.  11
    Quantifying the Interplay of Semantics and Phonology During Failures of Word Retrieval by People With Aphasia Using a Multiplex Lexical Network.Nichol Castro, Massimo Stella & Cynthia S. Q. Siew - 2020 - Cognitive Science 44 (9):e12881.
    Investigating instances where lexical selection fails can lead to deeper insights into the cognitive machinery and architecture supporting successful word retrieval and speech production. In this paper, we used a multiplex lexical network approach that combines semantic and phonological similarities among words to model the structure of the mental lexicon. Network measures at different levels of analysis (degree, network distance, and closeness centrality) were used to investigate the influence of network structure on picture naming accuracy and (...)
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  31.  13
    The Appeal to Expert Opinion: Quantitative Support for a Bayesian Network Approach.Adam J. L. Harris, Ulrike Hahn, Jens K. Madsen & Anne S. Hsu - 2016 - Cognitive Science 40 (6):1496-1533.
    The appeal to expert opinion is an argument form that uses the verdict of an expert to support a position or hypothesis. A previous scheme-based treatment of the argument form is formalized within a Bayesian network that is able to capture the critical aspects of the argument form, including the central considerations of the expert's expertise and trustworthiness. We propose this as an appropriate normative framework for the argument form, enabling the development and testing of quantitative predictions as to (...)
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  32.  2
    Ethics and Network Organizations.Robert A. Phillips - 2010 - Business Ethics Quarterly 20 (3):533-543.
    As value chains become longer with increases in outsourcing and subcontracting, the challenges of fixing responsibility become more difficult. Using concepts from the literature on social networks, this paper considers issues of diffusion of responsibility and plausible deniability in such relationships. Specifically, this paper isolates three sources of denial of – or defense against – attributions of responsibility: connection, control and knowledge. It goes on to consider the effects on network density and actor centrality as third parties (tertius illuminans) (...)
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  33.  4
    A Network-Based Dynamic Analysis in an Equity Stock Market.Juan Eberhard, Jaime F. Lavin & Alejandro Montecinos-Pearce - 2017 - Complexity:1-16.
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  34.  8
    Social network size can influence linguistic malleability and the propagation of linguistic change.Shiri Lev-Ari - 2018 - Cognition 176 (C):31-39.
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  35.  15
    Publish Late, Publish Rarely! : Network Density and Group Performance in Scientific Communication.Staffan Angere & Erik J. Olsson - 2017 - In Thomas Boyer-Kassem, Conor Mayo-Wilson & Michael Weisberg (eds.), Scientific Collaboration and Collective Knowledge. New York, USA: Oxford University Press.
    Research programs regularly compete to achieve the same goal, such as the discovery of the structure of DNA or the construction of a TEA laser. The more the competing programs share information, the faster the goal is likely to be reached, to society’s benefit. But the “priority rule”-the scientific norm according to which the first program to reach the goal in question must receive all the credit for the achievement-provides a powerful disincentive for programs to share information. How, then, is (...)
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  36.  6
    Adaptive Backstepping Fuzzy Neural Network Fractional-Order Control of Microgyroscope Using a Nonsingular Terminal Sliding Mode Controller.Juntao Fei & Xiao Liang - 2018 - Complexity 2018:1-12.
    An adaptive fractional-order nonsingular terminal sliding mode controller for a microgyroscope is presented with uncertainties and external disturbances using a fuzzy neural network compensator based on a backstepping technique. First, the dynamic of the microgyroscope is transformed into an analogical cascade system to guarantee the application of a backstepping design. Then, a fractional-order nonsingular terminal sliding mode surface is designed which provides an additional degree of freedom, higher precision, and finite convergence without a singularity problem. The proposed control scheme (...)
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  37.  5
    Brain Network Changes in Fatigued Drivers: A Longitudinal Study in a Real-World Environment Based on the Effective Connectivity Analysis and Actigraphy Data.André Fonseca, Scott Kerick, Jung-Tai King, Chin-Teng Lin & Tzyy-Ping Jung - 2018 - Frontiers in Human Neuroscience 12.
  38.  16
    Introduction to the Special Issue on the Impact of Network Ethics on Business Practices.Antonino Vaccaro, Adele Santana & Donna J. Wood - 2009 - Journal of Business Ethics 90 (S4):441 - 446.
    This special issue on network ethics offers 15 scholarly articles from a variety of disciplines and fields of study, all aimed at exploring some important aspect of how networks develop, enact, and enforce ethical norms. The articles are ordered according to the levels of analysis each deals with, ranging from the cognitive/intra-personal to the systemic/societal. Taken together, these articles provide a fresh look at how networks are changing the way business is done and the way we think about ethics.
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  39.  16
    A Network Model of Observation and Imitation of Speech.Nira Mashal, Ana Solodkin, Anthony Steven Dick, E. Elinor Chen & Steven L. Small - 2012 - Frontiers in Psychology 3.
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  40.  13
    Recurrent neural network-based models for recognizing requisite and effectuation parts in legal texts.Truong-Son Nguyen, Le-Minh Nguyen, Satoshi Tojo, Ken Satoh & Akira Shimazu - 2018 - Artificial Intelligence and Law 26 (2):169-199.
    This paper proposes several recurrent neural network-based models for recognizing requisite and effectuation parts in Legal Texts. Firstly, we propose a modification of BiLSTM-CRF model that allows the use of external features to improve the performance of deep learning models in case large annotated corpora are not available. However, this model can only recognize RE parts which are not overlapped. Secondly, we propose two approaches for recognizing overlapping RE parts including the cascading approach which uses the sequence of BiLSTM-CRF (...)
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  41.  5
    Neural Network for Complex Systems: Theory and Applications.Chenguang Yang, Jing Na, Guang Li, Yanan Li & Junpei Zhong - 2018 - Complexity 2018:1-2.
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  42.  15
    Methodological Considerations for Incorporating Clinical Data Into a Network Model of Retrieval Failures.Nichol Castro - 2022 - Topics in Cognitive Science 14 (1):111-126.
    Difficulty retrieving information (e.g., words) from memory is prevalent in neurogenic communication disorders (e.g., aphasia and dementia). Theoretical modeling of retrieval failures often relies on clinical data, despite methodological limitations (e.g., locus of retrieval failure, heterogeneity of individuals, and progression of disorder/disease). Techniques from network science are naturally capable of handling these limitations. This paper reviews recent work using a multiplex lexical network to account for word retrieval failures and highlights how network science can address the limitations (...)
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  43.  7
    Dreaming and the default network: A review, synthesis, and counterintuitive research proposal.G. William Domhoff & Kieran C. R. Fox - 2015 - Consciousness and Cognition 33:342-353.
  44. Az elektronikus prevenció lehetőségei az új (szintetikus) drogok használatának megelőzésében: a Rekreációs Drogok Európai Hálózatának (Recreational Drugs European Network ….Zsolt Demetrovics, Barbara Mervo, Ornella Corazza, Zoe Davey, Paolo Deluca, Colin Drummond, A. Enea, Jacek Moskalewicz, G. Di Melchiorre, L. Di Furia, Magí Farré, Liv Flesland, Luciano Floridi, Fruzsina Iszáj, N. Scherbaum, Holger Siemann, Arvid Skutle, Marta Torrens, M. Pasinetti, Cinzia Pezzolesi, Agnieszka Pisarska, Harry Shapiro, Elias Sferrazza, Peer Van der Kreeft & F. Schifano - 2010 - Addictologia Hungarica 1:289–297.
    Recreational Drugs European Network (ReDNet) project aims to use the Psychonaut Web Mapping Project database (Psychonaut Web Mapping Group, 2009) containing novel psychoactive compounds usually not mentioned in the scientific literature and thus unknown to clinicians as a unique source of information. The database will be used to develop an integrated ICT prevention approach targeted at vulnerable individuals and focused on novel synthetic and herbal compounds and combinations. Particular care will be taken in keeping the health professionals working directly (...)
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  45.  11
    Queueing network modeling of elementary mental processes.Yili Liu - 1996 - Psychological Review 103 (1):116-136.
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  46.  10
    Connecting the Dots: Anatomical Network Analysis in Morphological EvoDevo.Diego Rasskin-Gutman & Borja Esteve-Altava - 2014 - Biological Theory 9 (2):178-193.
    Morphological EvoDevo is a field of biological inquiry in which explicit relations between evolutionary patterns and growth or morphogenetic processes are made. Historically, morphological EvoDevo results from the coming together of several traditions, notably Naturphilosophie, embryology, the study of heterochrony, and developmental constraints. A special feature binding different approaches to morphological EvoDevo is the use of formalisms and mathematical models. Here we will introduce anatomical network analysis, a new approach centered on connectivity patterns formed by anatomical parts, with its (...)
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  47.  5
    Trait lasting alteration of the brain default mode network in experienced meditators and the experiential selfhood.Andrew A. Fingelkurts, Alexander A. Fingelkurts & Tarja Kallio-Tamminen - 2016 - Self and Identity 15 (4):381-393.
    Based on the finding in novices that four months of meditation training significantly increases frontal default mode network (DMN) module/subnet synchrony while decreasing left and right posterior DMN modules synchrony, the current study tested the prediction whether experienced meditators (those who are practising meditation intensively for several years) had a change in the DMN “trinity” of modules as a baseline trait characteristic and whether this change is in a similar direction as in the novice trainees who practised meditation for (...)
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  48.  10
    The Application of Feed - Forward Neural Network Architecture for Improving Energy Efficiency.Delia Balacian, Denisa Maria Melian & Stelian Stancu - 2023 - Postmodern Openings 14 (2):1-17.
    The energy sector contributes approximately two-thirds of global greenhouse gas emissions. In this context, the sector must adapt to new supply and demand networks for all future energy sources. The ongoing transformation in the European energy field is driven by the ambition of the European Union to reach the climate objectives set for 2030. The main actions are increasing renewable energy production, adapting transition fuels like natural gas to reduce emissions, improving energy efficiency across all economic sectors, prioritizing building, transportation, (...)
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  49.  7
    Commentary: A network theory of mental disorders.Payton J. Jones, Alexandre Heeren & Richard J. McNally - 2017 - Frontiers in Psychology 8.
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  50.  7
    The absolute network theory of language and traditional epistemology: On the philosophical foundations of Paul Churchland's scientific realism.Herman Philipse - 1990 - Inquiry: An Interdisciplinary Journal of Philosophy 33 (2):127 – 178.
    Paul Churchland's philosophical work enjoys an increasing popularity. His imaginative papers on cognitive science and the philosophy of psychology are widely discussed. Scientific Realism and the Plasticity of Mind (1979), his major book, is an important contribution to the debate on realism. Churchland provides us with the intellectual tools for constructing a unified scientific Weltanschauung. His network theory of language implies a provocative view of the relation between science and common sense. This paper contains a critical examination of Churchland's (...)
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