Results for 'ENDOGENOUS RETROVIRUS'

803 found
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  1.  16
    Endogenous retroviruses in mammals: An emerging picture of how ERVs modify expression of adjacent genes.Luke Isbel & Emma Whitelaw - 2012 - Bioessays 34 (9):734-738.
    Endogenous retrovirsuses (ERVs) have long been known to influence gene expression in plants in important ways, but what of their roles in mammals? Our relatively sparse knowledge in that area was recently increased with the finding that ERVs can influence the expression of mammalian resident genes by disrupting transcriptional termination. For many mammalian biologists, retrotransposition is considered unimportant except when it disrupts the reading frame of a gene, but this view continues to be challenged. It has been known for (...)
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  2.  9
    Placental endogenous retrovirus : structural, functional, and evolutionary significance.J. Robin Harris - 1998 - Bioessays 20 (4):307-316.
    That endogenous retrovirus (ERV) is present within the placenta of humans and other mammals has been known for the past 25 years, but the significance of this observation is still not fully understood. Much molecular biological data have emerged in recent years to support the earlier electron microscopic data on the presence of placental ERV. The evidence for ERV in animal and human placental tissue is presented, then integrated with data on the the presence of ERV in a (...)
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  3.  16
    Human endogenous retroviruses.Maurice Cohen & Erik Larsson - 1988 - Bioessays 9 (6):191-196.
    Several studies have revealed the presence in human DNA of thousands of endogenous retrovirus genomes, or HERVs. Many HERVs are related to extant retroviruses that infect other vertebrates and some have been present in the germ line of primates for millions of years. Although the HERVs that have been isolated are defective and thus do not encode infectious retroviruses, there may be HERVs that are capable of infection. In addition, because HERVs are so ancient in the human lineage, (...)
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  4.  13
    Placental endogenous retrovirus (ERV): structural, functional, and evolutionary significance.J. Robin Harris - 1998 - Bioessays 20 (4):307-316.
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  5.  21
    Are human endogenous retroviruses pathogenic? An approach to testing the hypothesis.George R. Young, Jonathan P. Stoye & George Kassiotis - 2013 - Bioessays 35 (9):794-803.
    A number of observations have led researchers to postulate that, despite being replication‐defective, human endogenous retroviruses (HERVs) may have retained the potential to cause or contribute to disease. However, mechanisms of HERV pathogenicity might differ substantially from those of modern infectious retroviruses or of the infectious precursors of HERVs. Therefore, novel pathways of HERV involvement in disease pathogenesis should be investigated. Recent technological advances in sequencing and bioinformatics are making this task increasingly feasible. The accumulating knowledge of HERV biology (...)
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  6.  18
    Endogenous Retroviruses and the Epigenome.Andrew B. Conley & I. King Jordan - 2012 - In Witzany Guenther (ed.), Viruses: Essential Agents of Life. Dordrecht: Springer. pp. 309--323.
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  7.  18
    Pluripotency and the endogenous retrovirus HERVH: Conflict or serendipity?Zsuzsanna Izsvák, Jichang Wang, Manvendra Singh, Dixie L. Mager & Laurence D. Hurst - 2016 - Bioessays 38 (1):109-117.
    Remnants of ancient retroviral infections during evolution litter all mammalian genomes. In modern humans, such endogenous retroviral (ERV) sequences comprise at least 8% of the genome. While ERVs and other types of transposable elements undoubtedly contribute to the genomic “junk yard”, functions for some ERV sequences have been demonstrated, with growing evidence that ERVs can be important players in gene regulatory processes. Here we focus on one particular large family of human ERVs, termed HERVH, which several recent studies suggest (...)
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  8.  15
    Genomic vagabonds: Endogenous retroviruses and placental evolution (comment on DOI 10.1002/bies.201300059).David Haig - 2013 - Bioessays 35 (10):845-846.
  9.  41
    Retroviruses facilitate the rapid evolution of the mammalian placenta.Edward B. Chuong - 2013 - Bioessays 35 (10):853-861.
    The mammalian placenta exhibits elevated expression of endogenous retroviruses (ERVs), but the evolutionary significance of this feature remains unclear. I propose that ERV‐mediated regulatory evolution was, and continues to be, an important mechanism underlying the evolution of placental development. Many recent studies have focused on the co‐option of ERV‐derived genes for specific functional adaptations in the placenta. However, the co‐option of ERV‐derived regulatory elements could potentially lead to the incorporation of entire gene regulatory networks, which, I argue, would facilitate (...)
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  10.  13
    Living patients in a permanent vegetative state as legitimate research subjects.S. Curry - 2006 - Journal of Medical Ethics 32 (10):606-607.
    Ravelingien et al1 argue that we should recategorise people in a permanent vegetative state as dead. Although the dilemma they describe is very real, their solution will not work. Other respondents to this paper have advanced several powerful arguments against the attempt to describe patients in a PVS as dead. Fortunately, the original argument contains sufficient resources for developing an alternative solution to this dilemma without having to radically change the current legal or social status of patients in a PVS. (...)
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  11.  45
    The Amazing Placenta: Evolution and Lifeline to Humanness.Graeme Finlay - 2020 - Zygon 55 (2):306-326.
    The placenta arose during mammalian evolution, which is recent in evolutionary terms. Genetic changes underlying placental development remain identifiable by the new science of comparative genomics (approximately post‐2000). Randomly arising features of genomes including endogenous retroviruses and transposable elements have provided structural genes and gene‐regulatory motifs responsible for innovations in placental biology. Stochastic genetic events indeed contribute to new functionality. Theologically, random mutations are part of the strategy by which the divine purpose for humanity is attained. Placental function critically (...)
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  12.  6
    Life Decoded: State Science and Nomad Science in Greg Bear’s Darwin’s Radio.Tom Idema - 2016 - Bulletin of Science, Technology and Society 36 (1):38-48.
    In Greg Bear’s critically acclaimed science fiction novel Darwin’s Radio, the activation of an endogenous retrovirus (SHEVA), ironically located in a “noncoding region” of the human genome, causes extreme symptoms in women worldwide, including miscarriages. In the United States, a task force is assembled to control the pandemic crisis and to find out how SHEVA operates at the genomic level. However, as the story unfolds, it becomes manifest that SHEVA is too complex to decode in this way and, (...)
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  13.  17
    What Doesn't Kill You Makes You Stronger: Transposons as Dual Players in Chromatin Regulation and Genomic Variation.Michelle Percharde, Tania Sultana & Miguel Ramalho-Santos - 2020 - Bioessays 42 (4):1900232.
    Transposable elements (TEs) are sequences currently or historically mobile, and are present across all eukaryotic genomes. A growing interest in understanding the regulation and function of TEs has revealed seemingly dichotomous roles for these elements in evolution, development, and disease. On the one hand, many gene regulatory networks owe their organization to the spread of cis‐elements and DNA binding sites through TE mobilization during evolution. On the other hand, the uncontrolled activity of transposons can generate mutations and contribute to disease, (...)
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  14. How Viruses Made Us Humans. [REVIEW]Guenther Witzany - 2024 - In Nathalie Gontier, Andy Lock & Chris Sinha (eds.), The Oxford Handbook of Human Symbolic Evolution. OUP. pp. 1-20.
    Current research on the origin of DNA and RNA, viruses, and mobile genetic elements prompts a re-evaluation of the origin and nature of genetic material as the driving force behind evolutionary novelty. While scholars used to think that novel features resulted from random genetic mutations of an individual’s specific genome, today we recognize the important role that acquired viruses and mobile genetic elements have played in introducing evolutionary novelty within the genomes of species. Viral infections and subviral RNAs can enter (...)
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  15.  11
    Why Biological Evolution Should Inspire Worship.Graeme Finlay - 2024 - Scientia et Fides 12 (1):163-188.
    The theory of biological evolution has often provoked disagreement, which has frequently been divisive and counterproductive. At other times this scientific paradigm has been discussed with an apologetic intent, to explain why the science of biology and the theology of creation cannot be seen to be mutually exclusive. This paper urges Christians to move decisively to a third type of discourse. The new field of comparative genetics has provided conclusive evidence that biological evolution has given rise to the diversity of (...)
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  16.  27
    Prolactin in man: a tale of two promoters.Sarah Gerlo, Julian R. E. Davis, Dixie L. Mager & Ron Kooijman - 2006 - Bioessays 28 (10):1051-1055.
    The pituitary hormone prolactin (PRL) is best known for its role in the regulation of lactation. Recent evidence furthermore indicates PRL is required for normal reproduction in rodents. Here, we report on the insertion of two transposon-like DNA sequences in the human prolactin gene, which together function as an alternative promoter directing extrapituitary PRL expression. Indeed, the transposable elements contain transcription factor binding sites that have been shown to mediate PRL transcription in human uterine decidualised endometrial cells and lymphocytes. We (...)
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  17.  93
    Endogenous epistemic factionalization.James Owen Weatherall & Cailin O’Connor - 2020 - Synthese 198 (Suppl 25):6179-6200.
    Why do people who disagree about one subject tend to disagree about other subjects as well? In this paper, we introduce a model to explore this phenomenon of ‘epistemic factionization’. Agents attempt to discover the truth about multiple propositions by testing the world and sharing evidence gathered. But agents tend to mistrust evidence shared by those who do not hold similar beliefs. This mistrust leads to the endogenous emergence of factions of agents with multiple, highly correlated, polarized beliefs.
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  18.  15
    Retrovirus vectors and their uses in molecular biology.Eli Gilboa - 1986 - Bioessays 5 (6):252-257.
    Retroviral vectors utilize the biochemical processes unique to retroviruses, to transfer genes with high efficiency into a wide variety of cell types in tissue culture and in living animals. With such vectors, the effect of newly introduced genes and the mechanism of gene expression can be studied in cell types so far refractory to other methods of transfer.
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  19. Imagination, Endogenous Attention, and Mental Agency.Tom Cochrane - 2023 - Phenomenology and the Cognitive Sciences 1:1-21.
    This paper develops a mechanistic account of basic mental agency by identifying similarities between two of its major exemplars: endogenous attention and imagination. Five key similarities are identified: i) that both capacities are driven by currently prioritised goals that are either person-level or apt to become person-level. ii) that both deliver their outputs to the working memory iii) that both range across all and only conceptual contents; iv) that both proceed under the guidance of norms and/or habits; and v) (...)
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  20.  92
    The strategy of endogenization in evolutionary biology.Samir Okasha - 2018 - Synthese 198 (Suppl 14):3413-3435.
    Evolutionary biology is striking for its ability to explain a large and diverse range of empirical phenomena on the basis of a few general theoretical principles. This article offers a philosophical perspective on the way that evolutionary biology has come to achieve such impressive generality, by focusing on “the strategy of endogenization”. This strategy involves devising evolutionary explanations for biological features that were originally part of the background conditions, or scaffolding, against which such explanations take place. Where successful, the strategy (...)
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  21.  10
    Koala Retrovirus Endogenisation in Action.Rachael E. Tarlinton - 2012 - In Witzany Guenther (ed.), Viruses: Essential Agents of Life. Dordrecht: Springer. pp. 283--291.
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  22.  23
    The Endogenously Active Brain: The Need for an Alternative Cognitive Architecture.William Bechtel - 2013 - Philosophia Scientiae 17 (2):3-30.
    La plupart des projets d’architectures cognitives dans les sciences cognitives et des explications des processus cérébraux dans les neurosciences interprètent l’esprit/cerveau comme réactif : le processus est déclenché par un stimulus et se termine par une réponse. Mais il y a de plus en plus de données laissant penser que le cerveau est endogéniquement actif : des oscillations de l’activité électrochimique à de multiples fréquences ont lieu dans le cerveau même en l’absence de stimuli et ceux-ci servent plutôt à moduler (...)
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  23.  15
    Retroviruses and primate evolution.Eugene D. Sverdlov - 2000 - Bioessays 22 (2):161-171.
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  24.  22
    The Endogenously Active Brain: The Need for an Alternative Cognitive Architecture.William Bechtel - 2013 - Philosophia Scientiae 17:3-30.
    La plupart des projets d’architectures cognitives dans les sciences cognitives et des explications des processus cérébraux dans les neurosciences interprètent l’esprit/cerveau comme réactif : le processus est déclenché par un stimulus et se termine par une réponse. Mais il y a de plus en plus de données laissant penser que le cerveau est endogéniquement actif : des oscillations de l’activité électrochimique à de multiples fréquences ont lieu dans le cerveau même en l’absence de stimuli et ceux-ci servent plutôt à moduler (...)
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  25.  48
    Endogenous entry in lowest-unique sealed-bid auctions.Harold Houba, Dinard Laan & Dirk Veldhuizen - 2011 - Theory and Decision 71 (2):269-295.
    Lowest-unique sealed-bid auctions are auctions with endogenous participation, costly bids, and the lowest bid among all unique bids wins. Properties of symmetric NEs are studied. The symmetric NE with the lowest expected gains is the maximin outcome under symmetric strategies, and it is the solution to a mathematical program. Comparative statics for the number of bidders, the value of the item and the bidding cost are derived. The two bidders’ auction is equivalent to the Hawk–Dove game. Simulations of replicator (...)
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  26.  8
    Retrovirus endógenos humanos: Significado biológico e implicaciones evolutivas.Carlos Sentís - 2002 - Arbor 172 (677):135-166.
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  27.  16
    Endogenous Development: Networking, Innovation, Institutions, and Cities.Antonio Vazquez-Barquero - 2002 - Routledge.
    The beginning of the twenty first century has been characterized by the expansion of economics, politics and institutional relations. Using international case studies, this book illustrates the local answer to the challenge of increasing competition. The book introduces the idea of endogenous development, identifying the theoretical roots and defining its main features. It then goes on to indicate how this concept can be used to understand economic dynamics, and to show how the concept is relevant in economic analysis and (...)
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  28.  26
    Endogenous risk and protection premiums.Jason Shogren - 1991 - Theory and Decision 31 (2-3):241-256.
  29.  69
    The Endogenous Feedback Network: A new approach to the comprehensive study of consciousness.Claudia Carrara Augustenborg - 2010 - Consciousness and Cognition 19 (2):547-579.
    The phenomenon of consciousness has received through the centuries a profusion of interpretations, engaging researchers across many disciplines. Nevertheless, consensus still floats at large. The aim of the present work is therefore twofold. Through the review of a selected number of existing proposals, it will first be considered the extents of their reciprocal compatibility, tentatively shaping an integrated, theoretical profile of consciousness. A new theory, the Endogenous Feedback Network will consequently be introduced which, besides being able to accommodate the (...)
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  30. Endogenous Timing in a Gaming Tournament.Jason F. Shogren, Stephan Kroll, Todd L. Cherry & Kyung Hwan Baik - 1999 - Theory and Decision 47 (1):1-21.
    This paper examines the theoretical background and actual behavior in a gaming tournament with endogenous timing where a person has more incentive, structure, and time to form a strategy. The baseline treatment suggests that subgame perfection is a reasonable predictor of behavior –- subjects made 170 of 208 theoretically predicted choices of best actions, with the majority of mistakes made in timing choices by the players who did not survive the cut to the second round. Four sensitivity treatments established (...)
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  31.  12
    Evolution at the host–retrovirus interface.Robert J. Gifford - 2006 - Bioessays 28 (12):1153-1156.
    Retroviruses are unusual amongst animal viruses in their capacity to integrate into host genomes and be transmitted vertically to host progeny. Vertebrate genomes contain numerous and diverse retrovirus‐derived sequences reflecting a long co‐evolutionary history during which genome invasion has occurred repeatedly, with wide‐ranging evolutionary consequences. Over the past 10 years, a detailed picture of retroviral diversity throughout vertebrate genomes has emerged, revealing striking and informative patterns that differ markedly across species. The power of these data to deliver far‐reaching insights (...)
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  32.  38
    Flexibility, endogenous risk, and the protection premium.Sergio H. Lence & Bruce A. Babcock - 1995 - Theory and Decision 38 (1):29-49.
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  33.  51
    Endogenous versus exogenous change: Change detection, self and agency.Bruno Berberian & Axel Cleeremans - 2010 - Consciousness and Cognition 19 (1):198-214.
    The goal of this study is to characterize observers’ abilities to discriminate between endogenous and exogenous changes. To do so, we developed a new experimental paradigm. On each trial, participants were shown a dot pattern on the screen. Next, the pattern disappeared and participants were to reproduce it. Changes were surreptuously introduced in the stimulus, either by presenting participants anew with the dot pattern they had themselves produced on the previous trial or by presenting participants with a slightly different (...)
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  34.  41
    Human Endogenous Formaldehyde as an Anticancer Metabolite: Its Oxidation Downregulation May Be a Means of Improving Therapy.Yuri L. Dorokhov, Ekaterina V. Sheshukova, Tatiana E. Bialik & Tatiana V. Komarova - 2018 - Bioessays 40 (12):1800136.
    Malignant cells are characterized by an increased content of endogenous formaldehyde formed as a by‐product of biosynthetic processes. Accumulation of formaldehyde in cancer cells is combined with activation of the processes of cellular formaldehyde clearance. These mechanisms include increased ALDH and suppressed ADH5/FDH activity, which oncologists consider poor and favorable prognostic markers, respectively. Here, the sources and regulation of formaldehyde metabolism in cancer cells are reviewed. The authors also analyze the participation of oncoproteins such as fibulins, FGFR1, HER2/neu, FBI‐1, (...)
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  35.  25
    Endogenizing the order of moves in matrix games.Jonathan H. Hamilton & Steven M. Slutsky - 1993 - Theory and Decision 34 (1):47-62.
  36. The Endogenous Electromagnetic Oscillations in the Consciousness Field Pattern Formation.G. Lednyiczky & O. Zhalko-Tytarenko - forthcoming - World Futures.
     
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  37.  12
    African Endogenous Knowledge and Sustainable Development: Evolving an African Agrarian Philosophy.Alloy S. Ihuah - 2023 - In Mbih Jerome Tosam & Erasmus Masitera (eds.), African Agrarian Philosophy. Springer Verlag. pp. 287-310.
    In Africa, the human person is the supreme force, the most powerful and dominant among all created beings. While this decreed power makes the lower beings subservient to humanity, it is only intended to be a source of harmony in the advancement of the hospitality and the joy of the human species. Today, however, the traditional lifestyles of Africans are threatened with virtual extinction by insensitive development over which the indigenous peoples have no participation. Africa has not only acquiesced a (...)
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  38. From Reactive to Endogenously Active Dynamical Conceptions of the Brain.Adele Abrahamsen & William Bechtel - unknown
    We contrast reactive and endogenously active perspectives on brain activity. Both have been pursued continuously in neurophysiology laboratories since the early 20thcentury, but the endogenous perspective has received relatively little attention until recently. One of the many successes of the reactive perspective was the identification, in the second half of the 20th century, of the distinctive contributions of different brain regions involved in visual processing. The recent prominence of the endogenous perspective is due to new findings of ongoing (...)
     
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  39.  19
    Asymmetric endogenous prize contests.Damian S. Damianov, Shane Sanders & Anil Yildizparlak - 2018 - Theory and Decision 85 (3-4):435-453.
    We consider a two-player contest in which one contestant has a headstart advantage, but both can exert further effort. We allow the prize to depend on total performance in the contest and consider the respective cases in which efforts are productive and destructive of prize value. When the contest success function takes a logit form, and marginal cost is increasing in effort, we show that a Nash equilibrium exists and is unique both in productive and destructive endogenous prize contests. (...)
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  40.  61
    Endogenous correlated equilibria in noncooperative games.Peter Vanderschraaf - 1995 - Theory and Decision 38 (1):61-84.
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  41.  28
    Endogenous Risks and the Risk Premium.Eric Briys - 1989 - Theory and Decision 26 (1):37.
  42.  16
    Natural history of the retrovirus associated with a human leukemia.Yorio Hinuma - 1985 - Bioessays 3 (5):205-209.
    A human retrovirus etiologically related to a unique leukemia, adult T‐cell leukemia, has been discovered. This retrovirus is endemic in certain areas and ethnic groups, such as the Japanese in Japan and Blacks in Africa. The virus is transmitted from mother to child and husband to wife and by blood transfusion. In addition, a virus like the human retrovirus has been found in various species of monkeys in Asia and Africa. This review describes and discusses recent results (...)
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  43.  10
    Endogenous Timing in a Gaming Tournament.Kyung Hwan Baik, Todd Cherry, Stephan Kroll & Jason Shogren - 1999 - Theory and Decision 47 (1):1-21.
    This paper examines the theoretical background and actual behavior in a gaming tournament with endogenous timing where a person has more incentive, structure, and time to form a strategy. The baseline treatment suggests that subgame perfection is a reasonable predictor of behavior –- subjects made 170 of 208 theoretically predicted choices of best actions, with the majority of mistakes made in timing choices by the players who did not survive the cut to the second round. Four sensitivity treatments established (...)
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  44.  19
    Endogenizing Epistemic Actions.Adam Bjorndahl & Will Nalls - 2021 - Studia Logica 109 (5):1049-1091.
    Through a series of examples, we illustrate some important drawbacks that the action model logic framework suffers from in its ability to represent the dynamics of information updates. We argue that these problems stem from the fact that the action model, a central construct designed to encode agents’ uncertainty about actions, is itself effectively common knowledge amongst the agents. In response to these difficulties, we motivate and propose an alternative semantics that avoids them by endogenizing the action model. We discuss (...)
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  45.  45
    Endogenous and exogenous opiates modulate the development of parent–infant attachment.James Edward Swain, Linda C. Mayes & James F. Leckman - 2005 - Behavioral and Brain Sciences 28 (3):364-365.
    In addition to endogenously produced opiates, which are part of normal affiliative neurocircuitry and attachment formation, exogenous opiates – such as drugs of addiction and abuse – may affect affiliation. We consider possible modulatory effects of such exogenous opiates on the development of early parent–infant attachment from both parents' and infants' perspectives.
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  46.  91
    Endogenous entry in lowest-unique sealed-bid auctions.Harold Houba, Dinard van der Laan & Dirk Veldhuizen - 2011 - Theory and Decision 71 (2):269-295.
    Lowest-unique sealed-bid auctions are auctions with endogenous participation, costly bids, and the lowest bid among all unique bids wins. Properties of symmetric NEs are studied. The symmetric NE with the lowest expected gains is the maximin outcome under symmetric strategies, and it is the solution to a mathematical program. Comparative statics for the number of bidders, the value of the item and the bidding cost are derived. The two bidders’ auction is equivalent to the Hawk–Dove game. Simulations of replicator (...)
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  47. Endogenous choice of institutional punishment mechanisms to promote social cooperation.Anabela Botelho, Glenn W. Harrison, Lígia M. Costa Pinto, Don Ross & Elisabet E. Rutstrom - forthcoming - Public Choice.
    Does the desirability of social institutions for public goods provision depend on the extent to which they include mechanisms for endogenous enforcement of cooperative behavior? We consider alternative institutions that vary the use of direct punishments to promote social cooperation. In one institution, subjects participate in a public goods experiment in which an initial stage of voluntary contribution is followed by a second stage of voluntary, costly sanctioning. Another institution consists of the voluntary contribution stage only, with no subsequent (...)
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  48.  58
    Endogenous entry in auctions with negative externalities.Isabelle Brocas - 2003 - Theory and Decision 54 (2):125-149.
    In this paper, we study the auction to allocate an indivisible good when each potential buyer has a private and independent valuation for the item and suffers a negative externality if a competitor acquires it. In that case, the outside option of each buyer is mechanism-dependent, which implies that participation is endogenous. As several works in the literature have shown, the optimal auction entails strong threats to induce full entry and maximal expected revenue. This results from the full commitment (...)
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  49.  9
    Endogenous Growth Model With Financial Intermediation.Dominika Byrska - 2021 - Studia Humana 10 (2):49-57.
    In this paper, we analyse the simplest possible three-dimensional model of endogenous growth to account for the relationship between financial intermediation and economic growth. In our setting, households maximize an interim utility function and firms maximize profit. Households can save money only through banks which offer firms investment loans. We show that under very general assumptions, investments realized by firms depend not only on savings accumulated by banks but also on financial intermediation technology ϕ(θ). Using mathematical methods of dynamical (...)
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  50.  59
    Sequential asymmetric auctions with endogenous participation.Flavio M. Menezes & Paulo K. Monteiro - 1997 - Theory and Decision 43 (2):187-202.
    In this paper we suggest a model of sequential auctions with endogenous participation where each bidder conjectures about the number of participants at each round. Then, after learning his value, each bidder decides whether or not to participate in the auction. In the calculation of his expected value, each bidder uses his conjectures about the number of participants for each possible subgroup. In equilibrium, the conjectured probability is compatible with the probability of staying in the auction. In our model, (...)
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