Results for 'Genetic program'

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  1. The "genetic program" program: A commentary on Maynard Smith on information in biology.Kim Sterelny - 2000 - Philosophy of Science 67 (2):195-201.
    In many texts on evolution the reader will find a characteristic depiction of inheritance and evolution, one showing the generations of an evolving population linked only by a causal flow from genotype to genotype. On this view, the genotype of each organism in this population plays a dual role as both the motor of individual development and as the sole causal channel across the generations. This picture is known to be literally false. In many species, parents exert direct causal influence (...)
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  2. Emergent Semiotics in Genetic Programming and the Self-Adaptive Semantic Crossover.Julio Michael Stern & Rafael Inhasz - 2010 - Studies in Computational Intelligence 314:381-392.
    We present SASC, Self-Adaptive Semantic Crossover, a new class of crossover operators for genetic programming. SASC operators are designed to induce the emergence and then preserve good building-blocks, using metacontrol techniques based on semantic compatibility measures. SASC performance is tested in a case study concerning the replication of investment funds.
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  3. Replacement of the “genetic programprogram.Ronald J. Planer - 2014 - Biology and Philosophy 29 (1):33-53.
    Talk of a “genetic program” has become almost as common in cell and evolutionary biology as talk of “genetic information”. But what is a genetic program? I understand the claim that an organism’s genome contains a program to mean that its genes not only carry information about which proteins to make, but also about the conditions in which to make them. I argue that the program description, while accurate in some respects, is ultimately (...)
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  4.  16
    Genetic Programming Control of an Articulated Robotic Manipulator.K. M. Ward, M. N. H. Siddique, L. P. Maguire & T. M. McGinnity - 2008 - Journal of Intelligent Systems 17 (Supplement):109-132.
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  5.  12
    Conserved genetic programs in insect and mammalian brain development.Frank Hirth & Heinrich Reichert - 1999 - Bioessays 21 (8):677-684.
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  6.  16
    A genetic programming approach for solving the linear ordering problem.Petrica C. Pop & Oliviu Matei - 2012 - In Emilio Corchado, Vaclav Snasel, Ajith Abraham, Michał Woźniak, Manuel Grana & Sung-Bae Cho (eds.), Hybrid Artificial Intelligent Systems. Springer. pp. 331--338.
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  7. Making sense of ‘genetic programs’: biomolecular Post–Newell production systems.Mihnea Capraru - 2024 - Biology and Philosophy 39 (2):1-12.
    The biomedical literature makes extensive use of the concept of a genetic program. So far, however, the nature of genetic programs has received no satisfactory elucidation from the standpoint of computer science. This unsettling omission has led to doubts about the very existence of genetic programs, on the grounds that gene regulatory networks lack a predetermined schedule of execution, which may seem to contradict the very idea of a program. I show, however, that we can (...)
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    Using genetic programming to learn and improve control knowledge.Ricardo Aler, Daniel Borrajo & Pedro Isasi - 2002 - Artificial Intelligence 141 (1-2):29-56.
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  9. A Roomful of Robovacs: How to Think About Genetic Programs.Brett Calcott - 2020 - In Sune Holm & Maria Serban (eds.), Philosophical Perspectives on the Engineering Approach in Biology: Living Machines? New York: Routledge.
    The notion of a genetic program has been widely criticized by both biologists and philosophers. But the debate has revolved around a narrow conception of what programs are and how they work, and many criticisms are linked to this same conception. To remedy this, I outline a modern and more apt idea of a program that possesses many of the features critics thought missing from programs. Moving away from over-simplistic conceptions of programs opens the way to a (...)
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  10.  18
    Hoare Logic-Based Genetic Programming.Pei He, LiShan Kang, Colin G. Johnson & Shi Ying - 2011 - Science China Information Sciences 54 (3):623-637.
    Almost all existing genetic programming systems deal with fitness evaluation solely by testing. In this paper, by contrast, we present an original approach that combines genetic programming with Hoare logic with the aid of model checking and finite state automata, henceby proposing a brand new verification-focused formal genetic programming system that makes it possible to evolve reliable programs with mathematicallyverified properties.
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  11. The Uses of Genetic Programming in Social Simulation: A Review of Five Books. [REVIEW]Bruce Edmonds - unknown
    Genetic Programming (GP) is a technique which permits automatic search for complex solutions using a computer. It goes beyond previous techniques in that it discovers the structure of those solutions. Previously, if one were trying to find an equation to fit a set of data, one would have had to provide the form of the equation (for example a fourth degree polynomial) and the computer could then find the appropriate parameters. By contrast, GP can experiment with a whole range (...)
     
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  12.  34
    A Kernel of Truth? On the Reality of the Genetic Program.Lenny Moss - 1992 - PSA: Proceedings of the Biennial Meeting of the Philosophy of Science Association 1992:335 - 348.
    The existence claim of a "genetic program" encoded in the DNA molecule which controls biological processes such as development has been examined. Sources of belief in such an entity are found in the rhetoric of Mendelian genetics, in the informationist speculations of Schrodinger and Delbruck, and in the instrumental efficacy found in the use of certain viral, and molecular genetic techniques. In examining specific research models, it is found that attempts at tracking the source of biological control (...)
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  13.  12
    Visualizing Tree Structures in Genetic Programming.Jason M. Daida, Adam M. Hilss, David J. Ward & Stephen L. Long - 2005 - Genetic Programming and Evolvable Machines 6.
    This paper presents methods to visualize the structure of trees that occur in genetic programming. These methods allow for the inspection of structure of entire trees even though several thousands of nodes may be involved. The methods also scale to allow for the inspection of structure for entire populations and for complete trials even though millions of nodes may be involved. Examples are given that demonstrate how this new way of “seeing” can afford a potentially rich way of understanding (...)
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  14.  30
    François Jacob's Lab in the Seventies: The T-complex and the Mouse Developmental Genetic Program.Michel Morange - 2000 - History and Philosophy of the Life Sciences 22 (3):397 - 411.
    The existence of a genetic program of development was proposed by molecular biologists in the nineteen-sixties. Historians and philosophers of science have since thoroughly criticized this notion. To fully appreciate its significance, it is interesting to consider the research which was pursued during this period by molecular biologists who proposed this notion. This study focuses on François Jacob's work and on the model of development supported by his lab in the early seventies, the T-complex model. This episode of (...)
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  15.  52
    Automatic Generation of Cognitive Theories using Genetic Programming.Enrique Frias-Martinez & Fernand Gobet - 2007 - Minds and Machines 17 (3):287-309.
    Cognitive neuroscience is the branch of neuroscience that studies the neural mechanisms underpinning cognition and develops theories explaining them. Within cognitive neuroscience, computational neuroscience focuses on modeling behavior, using theories expressed as computer programs. Up to now, computational theories have been formulated by neuroscientists. In this paper, we present a new approach to theory development in neuroscience: the automatic generation and testing of cognitive theories using genetic programming (GP). Our approach evolves from experimental data cognitive theories that explain “the (...)
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  16. Evolutionary models of cooperative mechanisms: Artificial morality and genetic programming.Peter Danielson - 1998 - In Modeling rationality, morality, and evolution. New York: Oxford University Press. pp. 7.
     
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  17.  17
    Retina Development in Vertebrates: Systems Biology Approaches to Understanding Genetic Programs.Lorena Buono & Juan-Ramon Martinez-Morales - 2020 - Bioessays 42 (4):1900187.
    The ontogeny of the vertebrate retina has been a topic of interest to developmental biologists and human geneticists for many decades. Understanding the unfolding of the genetic program that transforms a field of progenitors cells into a functionally complex and multi‐layered sensory organ is a formidable challenge. Although classical genetic studies succeeded in identifying the key regulators of retina specification, understanding the architecture of their gene network and predicting their behavior are still a distant hope. The emergence (...)
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  18.  8
    (1+1) genetic programming with functionally complete instruction sets can evolve Boolean conjunctions and disjunctions with arbitrarily small error. [REVIEW]Benjamin Doerr, Andrei Lissovoi & Pietro S. Oliveto - 2023 - Artificial Intelligence 319 (C):103906.
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  19.  10
    Automated query learning with Wikipedia and genetic programming.Pekka Malo, Pyry Siitari & Ankur Sinha - 2013 - Artificial Intelligence 194:86-110.
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  20.  8
    Internal reinforcement in a connectionist genetic programming approach.Astro Teller & Manuela Veloso - 2000 - Artificial Intelligence 120 (2):165-198.
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  21.  6
    An evolutionary system for neural logic networks using genetic programming and indirect encoding.Athanasios Tsakonas, Vasilios Aggelis, Ioannis Karkazis & Georgios Dounias - 2004 - Journal of Applied Logic 2 (3):349-379.
  22.  59
    Hitoshi Iba, Yoshihiko Hasegawa, and Topon Kumar Paul: Applied Genetic Programming and Machine Learning: CRC Press, Boca Raton, FL, 2010, 349 pp, $79.95, ISBN 978-1-4398-0369-1. [REVIEW]Osman Hassab Elgawi - 2012 - Minds and Machines 22 (4):381-383.
  23. Genetic variance–covariance matrices: A critique of the evolutionary quantitative genetics research program.Massimo Pigliucci - 2006 - Biology and Philosophy 21 (1):1-23.
    This paper outlines a critique of the use of the genetic variance–covariance matrix (G), one of the central concepts in the modern study of natural selection and evolution. Specifically, I argue that for both conceptual and empirical reasons, studies of G cannot be used to elucidate so-called constraints on natural selection, nor can they be employed to detect or to measure past selection in natural populations – contrary to what assumed by most practicing biologists. I suggest that the search (...)
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  24.  1
    Hitoshi Iba, Yoshihiko Hasegawa, and Topon Kumar Paul: Applied Genetic Programming and Machine Learning: CRC Press, Boca Raton, FL, 2010, 349 pp, $79.95, ISBN 978-1-4398-0369-1. [REVIEW]Hassab Elgawi Osman - 2012 - Minds and Machines 22 (4):381-383.
  25.  42
    Drosophila Genetics: A Reductionist Research Program.Nils Roll-Hansen - 1978 - Journal of the History of Biology 11 (1):159 - 210.
  26.  13
    Iterative genetic improvement: Scaling stochastic program synthesis.Yuan Yuan & Wolfgang Banzhaf - 2023 - Artificial Intelligence 322 (C):103962.
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  27.  14
    Program Report: Genetic Counseling and Genetic Engineering.Marc Lappè - 1971 - Hastings Center Report 1 (3):13-14.
  28.  12
    Screening and Counseling for Genetic Conditions: The Ethical, Social, and Legal Implications of Genetic Screening, Counseling, and Education Programs.Philip Reilly, John C. Fletcher & Karen Lebacqz - 1983 - Hastings Center Report 13 (5):40.
    Book reviewed in this article: Coping with Genetic Disorders. By John C. Fletcher. Genetics, Ethics and Parenthood. Edited by Karen Lebacqz. Screening and Counseling for Genetic Conditions: The Ethical, Social, and Legal Implications of Genetic Screening, Counseling, and Education Programs. A report of the President's Commission for the Study of Ethical Problems in Medicine and Biomedical and Behavioral Research.
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  29.  13
    From the genetic to the computer program: the historicity of ‘data’ and ‘computation’ in the investigations on the nematode worm C. elegans.Miguel García-Sancho - 2012 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 43 (1):16-28.
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  30.  58
    When Public Health and Genetic Privacy Collide: Positive and Normative Theories Explaining How ACA's Expansion of Corporate Wellness Programs Conflicts with GINA's Privacy Rules.Jennifer S. Bard - 2011 - Journal of Law, Medicine and Ethics 39 (3):469-487.
    The Patient Protection and Affordable Care Act of 2010 (ACA) contains many provisions intended to increase access to and lower the cost of health care by adopting public health measures. One of these promotes the use of at-work wellness programs by both providing employers with grants to develop these programs and also increasing their ability to tie the price employees pay for health insurance for participating in these programs and meeting specific health goals. Yet despite ACA's specific alteration of three (...)
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  31.  44
    Explaining Same-Sex Sexual Behavior: The Stagnation of the Genetic and Evolutionary Research Programs.Karori Mbugua - 2015 - Journal for General Philosophy of Science / Zeitschrift für Allgemeine Wissenschaftstheorie 46 (1):23-43.
    This paper is an attempt to reconstruct the history of genetic and evolutionary theories of same-sex sexual behavior using Imre Lakatos’ methodology of scientific research programs . Although distinct, those two programs are complementary. Whereas the genetic program maintains that homosexuality is genetically inherited, the evolutionary program attempts to explain how such a gene, which apparently reduces the reproductive fitness of its homozygous carrier, is maintained in the population. This appraisal reveals that the two research programs (...)
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  32.  16
    When Public Health and Genetic Privacy Collide: Positive and Normative Theories Explaining How ACA's Expansion of Corporate Wellness Programs Conflicts with GINA's Privacy Rules.Jennifer S. Bard - 2011 - Journal of Law, Medicine and Ethics 39 (3):469-487.
    The passing of the Patient Protection and Affordable Care Act is a triumph for the field of public health. Its inclusion of many provisions intended to prevent illness and promote health endorses the core belief of public health as expressed by Dr. Georges Benjamin, the long-time executive director of the American Public Health Association, in a Washington Post opinion piece praising ACA for “provid[ing] care as far upstream as possible… [in order to] reduce costs by identifying problems early and then (...)
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  33.  7
    Introduction to genetics—a program for self instruction.K. W. Wilkes - 1965 - The Eugenics Review 57 (1):32.
  34.  34
    Genetically induced communication network fault tolerance.Stephen F. Bush - 2003 - Complexity 9 (2):19-33.
    This paper presents the architecture and initial feasibility results of a proto-type communication network that utilizes genetic programming to evolve services and protocols as part of network operation. The network evolves responses to environmental conditions in a manner that could not be preprogrammed within legacy network nodes a priori. A priori in this case means before network operation has begun. Genetic material is exchanged, loaded, and run dynamically within an active network. The transfer and execution of code in (...)
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  35.  30
    From the genetic to the computer program: the historicity of 'data' and 'computation' in the investigations on the nematode worm C. elegans (1963–1998). [REVIEW]Miguel García-Sancho - 2012 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 43 (1):16-28.
  36.  57
    Genetics and bioethics: How our thinking has changed since 1969.LeRoy Walters - 2012 - Theoretical Medicine and Bioethics 33 (1):83-95.
    In 1969, the field of human genetics was in its infancy. Amniocentesis was a new technique for prenatal diagnosis, and a newborn genetic screening program had been established in one state. There were also concerns about the potential hazards of genetic engineering. A research group at the Hastings Center and Paul Ramsey pioneered in the discussion of genetics and bioethics. Two principal techniques have emerged as being of enduring importance: human gene transfer research and genetic testing (...)
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  37.  16
    EFP-GA: An Extended Fuzzy Programming Model and a Genetic Algorithm for Management of the Integrated Hub Location and Revenue Model under Uncertainty.Yaser Rouzpeykar, Roya Soltani & Mohammad Ali Afashr Kazemi - 2022 - Complexity 2022:1-12.
    The aviation industry is one of the most widely used applications in transportation. Due to the limited capacity of aircraft, revenue management in this industry is of high significance. On the other hand, the hub location problem has been considered to facilitate the demands assignment to hubs. This paper presents an integrated p-hub location and revenue management problem under uncertain demand to maximize net revenue and minimize total cost, including hub establishment and transportation costs. A fuzzy programming model and a (...)
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  38.  41
    Co-regulation of stress in uterus and during early infancy mediates early programming of gender differences in attachment styles: Evolutionary, genetic, and endocrinal perspectives.Sari Goldstein Ferber - 2009 - Behavioral and Brain Sciences 32 (1):29-30.
    According to evolutionary, genetic, and endocrinal perspectives, gender differences are modulated by the interaction between intra-uterine stress, genetic equipments, and the availability of the facilitating environment during the newborn period. The social message of fitness over obstacles during socialization and the discussion of secure/non-secure attachment styles should take into consideration the brain functions, which are altered differently in response to intra- and extra-uterine stress in each gender.
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  39.  58
    A program for the semantics of science.Mario Bunge - 1972 - Journal of Philosophical Logic 1 (3/4):317 - 328.
    Our program is ambitious, as is any attempt to match life (in our case real science) with virtue (e.g., exactness). We want our semantics to be not only simia mathematicae but also ancilla scientiae: built more geometrico and at the same time relevant, nay useful, to live science. The goal of exactness may sound arrogant but is actually modest, for the more we rigorize the more we are forced to leave out of consideration, at least for the time being. (...)
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  40. Evolution, Genetic Engineering, and Human Enhancement.Russell Powell, Guy Kahane & Julian Savulescu - 2012 - Philosophy and Technology 25 (4):439-458.
    There are many ways that biological theory can inform ethical discussions of genetic engineering and biomedical enhancement. In this essay, we highlight some of these potential contributions, and along the way provide a synthetic overview of the papers that comprise this special issue. We begin by comparing and contrasting genetic engineering with programs of selective breeding that led to the domestication of plants and animals, and we consider how genetic engineering differs from other contemporary biotechnologies such as (...)
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  41.  1
    Source code obfuscation with genetic algorithms using LLVM code optimizations.Juan Carlos de la Torre, Javier Jareño, José Miguel Aragón-Jurado, Sébastien Varrette & Bernabé Dorronsoro - forthcoming - Logic Journal of the IGPL.
    With the advent of the cloud computing model allowing a shared access to massive computing facilities, a surging demand emerges for the protection of the intellectual property tied to the programs executed on these uncontrolled systems. If novel paradigm as confidential computing aims at protecting the data manipulated during the execution, obfuscating techniques (in particular at the source code level) remain a popular solution to conceal the purpose of a program or its logic without altering its functionality, thus preventing (...)
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  42.  21
    Genetic correlation between the ages of menarche and menopause.Jocelyn Scott Peccei - 2000 - Human Nature 11 (1):43-63.
    Using mostly prospective menstrual data from mothers and daughters in the Tremin Trust Menstrual Reproductive History Program, this study produces the first estimates of the genetic correlation between the ages of menarche and menopause. I carried out two separate analyses. Standard regression analysis of 21 mother/daughter dyads with natural menopause yielded a nonsignificant negative mean genetic correlation of r A =−0.139±1.268. Survival analysis/maximum likelihood estimation on a dataset which included an additional 85 dyads with censored observations on (...)
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  43. Genetic Knowledge is a Civil Right. Towards a New Model of Health Contract as Social Contract.Hans-Martin Sass - 2010 - Eubios Journal of Asian and International Bioethics 20 (1):2-9.
    Genetic knowledge is a civil right and a civil obligation. New genetic knowledge in individual health risk prediction and prevention and new pharmacogenetic opportunities for developing more efficacious individualized drugs broaden human and civil rights for better health and health care. Public health policy has yet to develop and provide programs in genetic information and consultation together with other health risk information and health literacy education. Data availability and genetic knowledge will make citizens more competent partners (...)
     
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  44. Innateness and Genetic Information.Peter Godfrey-Smith - unknown
    The idea that innateness can be understood in terms of genetic coding or genetic programming is discussed. I argue that biology does not provide any support for the view that the whole-organism features of interest to nativists in psychology and linguistics are genetically coded for. This provides some support for recent critical and deflationary treatments of the concept of innateness.
     
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  45.  54
    Synthetic biology and genetic causation.Gry Oftedal & Veli-Pekka Parkkinen - 2013 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 44 (2):208-216.
    Synthetic biology research is often described in terms of programming cells through the introduction of synthetic genes. Genetic material is seemingly attributed with a high level of causal responsibility. We discuss genetic causation in synthetic biology and distinguish three gene concepts differing in their assumptions of genetic control. We argue that synthetic biology generally employs a difference-making approach to establishing genetic causes, and that this approach does not commit to a specific notion of genetic (...) or genetic control. Still, we suggest that a strong program concept of genetic material can be used as a successful heuristic in certain areas of synthetic biology. Its application requires control of causal context, and may stand in need of a modular decomposition of the target system. We relate different modularity concepts to the discussion of genetic causation and point to possible advantages of and important limitations to seeking modularity in synthetic biology systems. (shrink)
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  46.  29
    Genetic Engineering.Kevin Wilger - 2019 - The National Catholic Bioethics Quarterly 19 (4):601-615.
    Genetic engineering is a rapidly evolving field of research with potentially powerful therapeutic applications. The technology CRISPR-Cas9 not only has improved the accuracy and overall feasbility of genome editing but also has increased access to users by lowering cost and increasing usability and speed. The potential benefits of genetic engineering may come with an increased risk of off-target events or carcinogenic growth. Germ-line cell therapy may also pose risks to potential progeny and thus have an additional burden of (...)
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  47.  34
    Transhumanist Genetic Enhancement: Creation of a ‘New Man’ Through Technological Innovation.George L. Mendz & Michael Cook - 2021 - The New Bioethics 27 (2):105-126.
    The transhumanist project of reshaping human beings by promoting their improvement through technological innovations has a broad agenda. This study focuses on the enhancement of the human organism through genetic modification techniques. Transhumanism values and a discussion of their philosophical background provide a framework to understand its ideals. Genetics and ethics are employed to assess the claims of the transhumanist program of human enhancement. A succinct description of central concepts in genetics and an explanation of current techniques to (...)
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  48.  31
    Genetic Testing and Genetic Screening.Pat Milmoe McCarrick - 1993 - Kennedy Institute of Ethics Journal 3 (3):333-354.
    In lieu of an abstract, here is a brief excerpt of the content:Genetic Testing and Genetic ScreeningPat Milmoe McCarrick (bio)In recent years there has been an enormous expansion in the knowledge that may be gleaned from the testing of an individual's genetic material to predict present or future disability or disease either for oneself or one's offspring. The Human Genome Project, which is currently mapping the entire human gene system, is identifying progressively more genetic sequencing information (...)
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  49. Human Genetic Technology, Eugenics, and Social Justice.W. Malcolm Byrnes - 2001 - The National Catholic Bioethics Quarterly 1 (4):555-581.
    In this new post-genomic age of medicine and biomedical technology, there will be novel approaches to understanding disease, and to finding drugs and cures for diseases. Hundreds of new “disease genes” thought to be the causative agents of various genetic maladies will be identified and added to the list of hundreds of such genes already identified. Based on this knowledge, many new genetic tests will be developed and used in genetic screening programs. Genetic screening is the (...)
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  50.  7
    Ethical Issues in Human Genetics: Genetic Counseling and the Use of Genetic Knowledge.Henry David Aiken & Bruce Hilton - 1973 - Springer.
    "The Bush administration and Congress are in concert on the goal of developing a fleet of unmanned aircraft that can reduce both defense costs and aircrew losses in combat by taking on at least the most dangerous combat missions. Unmanned combat aerial vehicles (UCAVs) will be neither inexpensive enough to be readily expendable nor-- at least in early development-- capable of performing every combat mission alongside or in lieu of manned sorties. Yet the tremendous potential of such systems is widely (...)
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