Diagrams have distinctive characteristics that make them an effective medium for communicating research findings, but they are even more impressive as tools for scientific reasoning. Focusing on circadian rhythm research in biology to explore these roles, we examine diagrammatic formats that have been devised to identify and illuminate circadian phenomena and to develop and modify mechanistic explanations of these phenomena.

The classic modern statement of mind-body interactionism. In Carpenter's view, not only is mental activity the direct result of the physiological activity of the nervous system, the course of neural activity can in its turn be influenced by the occurrence of mental events.

Some proponents of mechanistic explanation downplay the significance of how-possibly explanations. We argue that developing accounts of mechanisms that could explain a phenomenon is an important aspect of scientific reasoning, one that involves imagination. Although appeals to imagination may seem to obscure the process of reasoning, we illustrate how, by examining diagrams we can gain insights into the construction of mechanistic explanations.

As such, the book will interest readers of gay/lesbian/bisexual/transgender studies, intellectual history, political theory, and the history of gender/sexuality ...

Traditionally, identity and supervenience have been proposed in philosophy of mind as metaphysical accounts of how mental activities (fully understood, as they might be at the end of science) relate to brain processes. Kievet et al. suggest that to be relevant to cognitive neuroscience, these philosophical positions must make empirically testable claims and be evaluated accordingly – they cannot sit on the sidelines, awaiting the hypothetical completion of cognitive neuroscience. We agree with the authors on the importance of rendering these (...) positions relevant to ongoing science. We disagree, however, with their proposal that a metaphysical relationship (identity or supervenience) should “serve as a means to conceptually organize and guide the analysis of neurological and behavioral data” (p. 7). Instead, we advance a different view of the goals of cognitive neuroscience and of the proper means of relating metaphysics and explanation. Our central objection to the psychometric approach deployed by Kievet et al. is that the formal models only account for correlations between variables (measurements) and do not aid in explaining phenomena. Cognitive neuroscience is concerned with the latter. We develop this point in section 2 in which we present what we find to be problematic in their proposed models. In section 3 we advance an account of what is required to explain phenomena: (a) providing an adequate description of a phenomenon; and (b) characterizing the mechanism responsible for it. In doing so we will characterize a version of the identity theory, heuristic identity theory (HIT) which figures centrally in developing such explanations and illustrate its role in what we take to.. (shrink)

In many fields of biology, both the phenomena to be explained and the mechanisms proposed to explain them are commonly presented in diagrams. Our interest is in how scientists construct such diagrams. Researchers begin with evidence, typically developed experimentally and presented in data graphs. To arrive at a robust diagram of the phenomenon or the mechanism, they must integrate a variety of data to construct a single, coherent representation. This process often begins as the researchers create a first sketch, and (...) it continues over an extended period as they revise the sketch until they arrive at a diagram they find acceptable. We illustrate this process by examining the sketches developed in the course of two research projects directed at understanding the generation of circadian rhythms in cyanobacteria. One identified a new aspect of the phenomenon itself, whereas the other aimed to develop a new mechanistic account. In both cases, the research resulted in a paper in which the conclusion was presented in a diagram that the authors deemed adequate to convey it. These diagrams violate some of the normative “cognitive design principles” advanced by cognitive scientists as constraints on successful visual communication. We suggest that scientists’ sketching is instead governed by norms of success that are broadly explanatory: conveying the phenomenon or mechanism. (shrink)

Volume 19, Issue 9, September 2019, Page 64-66.

War After September 11 considers the just aims and legitimate limits of the United States' response to the terrorist attacks of September 11, 2001.

Maintaining and coordinating multiple task-sets is difficult and leads to costs, however task-switching training can reduce these deficits. A recent study in young adults demonstrated that this training effect occurs at an amodal processing level. Old age is associated with reduced cognitive plasticity and further increases the performance costs when mixing multiple tasks. Thus, cognitive aging might be a limiting factor for inducing cross-modal training effects in a task-switching environment. We trained participants, aged 62–83 years, with an auditory task-switching paradigm (...) over four sessions, to investigate whether training-related reductions in task-switching costs would also manifest in an untrained visual modality version of the task. Two control groups trained with single tasks or not trained allowed us to identify improvements specific to task-switching training. To make statistical evaluations of any age differences in training and cross-modal transfer, the data from the Kattner cohort were incorporated into the present analysis. Despite the tendency for older adults to respond more cautiously, task-switching training specifically led to a mixing cost reduction in both trained and untrained modalities, the magnitude of which was statistically similar regardless of age. In line with a growing body of research, we failed to observe any far transfer effects in measures of inhibition, working memory or fluid intelligence. Overall, we conclude that any apparent cognitive limitations associated with aging do not prevent cognitive control processes which support set-shifting from improving at an amodal level. (shrink)

We explore the crucial role of diagrams in scientific reasoning, especially reasoning directed at developing mechanistic explanations of biological phenomena. We offer a case study focusing on one research project that resulted in a published paper advancing a new understanding of the mechanism by which the central circadian oscillator in Synechococcus elongatus controls gene expression. By examining how the diagrams prepared for the paper developed over the course of multiple drafts, we show how the process of generating a new explanation (...) vitally involved the development and integration of multiple versions of different types of diagrams, and how reasoning about the mechanism proceeded in tandem with the development of the diagrams used to represent it. (shrink)

What is the status of the dichotomy proposed and the nosological validity of the contrasting pathologies described in the target article? How plausibly can dysregulated imprinting explain the array of features described, compared with other genetic models? We believe that considering alternative models is more likely to lead in the long term to the correct classification and explanation of the component behaviours.

Anarchism is by far the least broadly understood ideology and the least studied academically. Though highly influential, both historically and in terms of recent social movements, anarchism is regularly dismissed. Anarchism: A Conceptual Approach is a welcome addition to this growing field, which is widely debated but poorly understood. Occupying a distinctive position in the study of anarchist ideology, this volume, authored by a handpicked group of established and rising scholars, investigates how anarchists often seek to sharpen their message and (...) struggle to determine what ideas and actions are central to their identity. Moving beyond defining anarchism as simply an ideology or political theory, this book examines the meanings of its key concepts, which have been divided into three categories: Core, Adjacent, and Peripheral concepts. Each chapter focuses on one important concept, shows how anarchists have understood the concept, and highlights its relationships to other concepts. Although anarchism is often thought of as a political topic, the interdisciplinary nature of Anarchism: A Conceptual Approach makes it of interest to students and scholars across the social sciences, liberal arts, and the humanities. (shrink)

Biologists often hypothesize mechanisms to explai phenomena. Our interest is how their understanding of the phenomena and mechanisms develops as they construct diagrams to communicate their claims. We present two case studies in which scientists integrate various data to create a single diagram to communicate their major conclusions in a research publication. In both cases, the history of revisions suggests that scientists' initial drafts encode biases and oversights that are only gradually overcome through prolonged, reflective re-design. To account for this, (...) we suggest that scientists only develop a unitary understanding of their results through their attempts to communicate them. (shrink)

The application of machine learning in health care holds great promise for improving care. Indeed, our own team is collaborating with experts in machine learning and statistical modeling to bu...

This article reviews the effects of malnutrition on early brain development using data generated from animal experiments and human clinical studies. Three related processes, each with their own functional consequences, are implicated in the alteration of brain development. (1) Maternal undernutrition at the start of pregnancy results in reduced transfer of nutrients across the placenta, allowing the conservation of effort for future reproductive episodes. (2) Differential allocation to growing organs by the fetus in response to nutritional stress spares the brain (...) to a large though still limited degree, reflecting the organ’s relative contribution to survival and reproductive success. (3) Prenatal malnutrition disrupts developing neurotransmitter systems, which results in the expression of specific cognitive and affective traits. It is argued that the increasing size and therefore cost of the brain, in conjunction with increasing ecological instability and marginality, reinforced selection for maternally controlled growth suppression of offspring, reallocation of organ growth rates by offspring, and behavioral changes related to development of neurotransmitter systems. (shrink)