Dynamics of complex systems is often hierarchically organized on different time scales. To understand the physics of such hierarchy, here Brownian motion of a particle moving through a fluctuating medium with slowly varying temperature is studied as an analytically tractable example, and a kinetic theory is formulated for describing the states of the particle. What is peculiar here is that the (inverse) temperature is treated as a dynamical variable. Dynamical hierarchy is introduced in conformity with the adiabatic scheme. Then, (...) a new analytical method is developed to show how the Fokker–Planck equation admits as a stationary solution the Maxwellian distribution modulated by the temperature fluctuations, the distribution of which turns out to be determined by the drift term. A careful comment is also made on so-called superstatistics. (shrink)

Proponents of two axioms of biological evolutionary theory have attempted to find justification by reference to nonequilibrium thermodynamics. One states that biological systems and their evolutionary diversification are physically improbable states and transitions, resulting from a selective process; the other asserts that there is an historically constrained inherent directionality in evolutionary dynamics, independent of natural selection, which exerts a self-organizing influence. The first, the Axiom of Improbability, is shown to be nonhistorical and thus, for a theory of (...) change through time, acausal. Its perception of the improbability of living states is at least partially an artifact of closed system thinking. The second, the Axiom of Historically Determined Inherent Directionality, is supported evidentially and has an explicit historical component. Historically constrained dynamic populations are inherently nonequilibrium systems. It is argued that living, evolving systems, when considered to be historically constrained nonequilibrium systems, do not appear improbable at all. Thus, the two axioms are not compatible. Instead, the Axiom of Improbability is considered to result from an unjustified attempt to extend the contingent proximal actions of natural selection into the area of historical, causal explanations. It is thus denied axiomatic status, and the effects of natural selection are subsumed as an additional level of constraint in an evolutionary theory derived from the Axiom of Historically Determined Inherent Directionality. (shrink)

This book concentrates on the properties of the stationary states in chaotic systems of particles or fluids, leaving aside the theory of the way they can be reached. The stationary states of particles or of fluids (understood as probability distributions on microscopic configurations or on the fields describing continua) have received important new ideas and data from numerical simulations and reviews are needed. The starting point is to find out which time invariant distributions come into play in physics. A (...) special feature of this book is the historical approach. To identify the problems the author analyzes the papers of the founding fathers Boltzmann, Clausius and Maxwell including translations of the relevant (parts of ) historical documents. He also establishes a close link between treatment of irreversible phenomena in statistical mechanics and the theory of chaotic systems at and beyond the onset of turbulence as developed by Sinai, Ruelle, Bowen (SRB) and others: the author gives arguments intending to support strongly the viewpoint that stationary states in or out of equilibrium can be described in a unified way. In this book it is the "chaotic hypothesis", which can be seen as an extension of the classical ergodic hypothesis to non equilibrium phenomena, that plays the central role. It is shown that SRB - often considered as a kind of mathematical playground with no impact on physical reality - has indeed a sound physical interpretation; an observation which to many might be new and a very welcome insight. Following this, many consequences of the chaotic hypothesis are analyzed in chapter 3 - 4, and in chapter 5 a few applications are proposed. Chapter 6 is historical: carefully analyzing the old literature on the subject, especially ergodic theory and its relevance for statistical mechanics; an approach which gives the book a very personal touch. The book contains an extensive coverage of current research (partly from the authors and his coauthors publications) presented in enough detail so that advanced students may get the flavor of a direction of research in a field which is still very much alive and progressing. Proofs of theorems are usually limited to heuristic sketches privileging the presentation of the ideas and providing references that the reader can follow, so that in this way an overload of this text with technical details could be avoided. (shrink)

This volume contains the invited lectures and a selection of the contributed papers and posters of the workshop on "Fluctuations and Sensitivity in Nonequil ibrium Systems", held at the Joe C. Thompson Conference Center, Un i vers ity of Texas at Austin, March 12-16, 1984. The workshop dealt with stochastic phenomena and sensi­ tivity in nonequilibrium systems from a macroscopic point of view. Durin9 the last few years it has been realized that the role of fluctuations is far less (...) trivial in systems far from equilibrium than in systems under thermodynamic equilibrium condi­ tions. It was found that random fluctuations often are a determining factor for the state adopted by macroscopic systems and cannot be regarded as secondary effects of minor importance. Further, nonequilibrium systems are also very sensitive to small systematic changes in their environment. The main aims of the workshop were: i) to provide scientists with an occasion to acquaint themselves with the state of the art in fluctuation theory and sensitivity analysis; ii) to provide a forum for the presentation of recent advances in theory and experiment; iii) to bring toge­ ther theoreticians and experimentalists in order to delineate the major open problems and to formulate strategies to tackle these problems. The organizing committee of the workshop consisted of W. Horsthemke, O. K. Konde­ pudi, G. Dewel, G. Nicolis, I. Prigogine and L. Reichl. (shrink)

The complex spectral representation of the Liouville operator introduced by Prigogine and others is applied to moderately dense gases interacting through hard-core potentials in arbitrary d-dimensional spaces. Kinetic equations near equilibrium are constructed in each subspace as introduced in the spectral decomposition for collective, renormalized reduced distribution functions. Our renormalization is a nonequilibrium effect, as the renormalization effect disappears at equilibrium. It is remarkable that our renormalized functions strictly obey well-defined Markovian kinetic equations for all d, even though the (...) ordinary distribution functions obey nonMarkovian equations with memory effects. One can now define transport coefficients associated to the collective modes for all dimensional systems including d = 2. Our formulation hence provides a microscopic meaning of the macroscopic transport theory. Moreover, this gives an answer to the long-standing question whether or not transport equations exist in two-dimensional systems. The non-Markovian effects for the ordinary distribution function, such as the long-time tails for arbitrary n-mode coupling, are estimated by superposition of the Markovian evolutions of the dressed distribution functions. (shrink)

There are two theoretical approaches in statistical mechanics, one associated with Boltzmann and the other with Gibbs. The theoretical apparatus of the two approaches offer distinct descriptions of the same physical system with no obvious way to translate the concepts of one formalism into those of the other. This raises the question of the status of one approach vis-à-vis the other. We answer this question by arguing that the Boltzmannian approach is a fundamental theory while Gibbsian statistical mechanics is (...) an effective theory, and we describe circumstances under which Gibbsian calculations coincide with the Boltzmannian results. We then point out that regarding GSM as an effective theory has important repercussions for a number of projects, in particular attempts to turn GSM into a nonequilibrium theory. (shrink)

Based on Newton’s laws reformulated in the Hamiltonian dynamics combined with statistical mechanics, we formulate a statistical mechanical theory supporting the hypothesis of a closed universe oscillating in phase-space. We find that the behavior of this universe as a whole can be represented by a free entropic oscillator whose lifespan is nonhomogeneous, thus implying that time is shorter or longer according to the state of this universe given through its entropy. We conclude that time reduces to the entropy production (...) of this universe and that a nonzero entropy production means that local fluctuations could exist giving rise to the appearance of masses and to the curvature of the space. (shrink)

A unified axiomatic theory that embraces both mechanics and thermodynamics is presented in three parts. It is based on four postulates; three are taken from quantum mechanics, and the fourth is the new disclosure of the existence of quantum states that are stable (Part I). For nonequilibrium and equilibrium states, the theory provides general original results, such as the relation between irreducible density operators and the maximum work that can be extracted adiabatically (Part IIa). For stable equilibrium (...) states, it shows for the first time that the canonical and grand canonical distributions are the only stable distributions (Part IIb). The theory discloses the incompleteness of the equation of motion of quantum mechanics not only for irreversible processes but, more significantly, for reversible processes (Part IIb). It establishes the operational meaning of an irreducible density operator and irreducible dispersions associated with any state, and reveals the relationship between such dispersions and the second law (Part III). (shrink)

Abstract.Growing interest in the origin of life, the physical foundations of biological theory, and the evolution of animal social systems has led to increasing efforts to understand the processes by which elements or living systems at one level of organizational complexity combine to form stable systems of higher order. J. Bronowski saw the need to extend or reformulate evolutionary theory to deal with the hierarchy problem and to account for the evolution of systems of “stratified stability.” The hierarchy (...) problem has become a matter of great interest also in nonequilibrium thermodynamic theory.An effort is made here to develop an abstract, phenomenological model, based on the laws of thermodynamics, to account for the origin and hierarchical evolution of living systems. It is argued that the principle of minimum entropy production, developed by I. Prigogine, applies generally to all thermodynamic systems and processes and is implicit in an extended and more complete formulation of the second law of thermodynamics. From this are derived a thermodynamic criterion and a principle of thermodynamic selection governing the formation of stable systems of “elements” of various levels of organization. Thermodynamic selection gives rise to the creation of “elements” having increasingly “open” characteristic structures which may combine spontaneously to form “social” or crystalline systems capable of growing and reproducing themselves through processes of fissioning or budding. Such simple, self‐reproducing systems are capable of evolving by natural selection, which is seen to be a special case of the more general process of thermodynamic selection. The principle of natural selection, thus formulated, has the character of a fundamental physical law. Self‐reproducing systems with suitably open hereditary programs may combine to form stable social systems, which may grow and reproduce as a unit. In this way self‐reproducing systems of increasing hierarchical order, size, and organizational complexity may evolve through processes of thermodynamic (natural) selection. Some implications of this open‐ended model and opportunities for testing its empirical and theoretical utility are explored. (shrink)

Part II of this three-part paper presents some of the most important theorems that can be deduced from the four postulates of the unified theory discussed in Part I. In Part IIa, it is shown that the maximum energy that can be extracted adiabatically from any system in any state is solely a function of the density operator $\hat \rho$ associated with the state. Moreover, it is shown that for any state of a system, nonequilibrium, equilibrium or stable (...) equilibrium, a unique propertyS exists which is proportional to the total energy of the system minus the maximum energy that can be extracted adiabatically from the system in combination with a reservoir. For statistically independent systems, propertyS is extensive, it is invariant during all reversible processes, and it increases during all irreversible processes. (shrink)

Many attempts have been made to provide Quantum Field Theory with conceptually clear and mathematically rigorous foundations; remarkable examples are the Bohmian and the algebraic perspectives respectively. In this essay we introduce the dissipative approach to QFT, a new alternative formulation of the theory explaining the phenomena of particle creation and annihilation starting from nonequilibrium thermodynamics. It is shown that DQFT presents a rigorous mathematical structure, and a clear particle ontology, taking the best from the mentioned perspectives. (...) Finally, after the discussion of its principal implications and consequences, we compare it with the main Bohmian QFTs implementing a particle ontology. (shrink)

Varieties of chemical and phase equilibria are controlled by the minimum Gibbs energy principle, according to which the Gibbs energy for a system will have the minimum value at any given temperature and pressure. It is understood that the minimum is with respect to all nonequilibrium states at the same temperature and pressure. The abstract relation between Gibbs energy and the equilibrium constant is deduced from fundamental laws of thermodynamics. However, actual use of this relation calls for the Gibbs (...) energy as a function of concentrations of the chemicals. Since thermodynamics is formulated without any reference to materials, how does one get that relation? This article provides the answer, and in the process shows that application of theory to experiments requires several intermediate layers where theory and experiment commingle. (shrink)

In the previous papers, it was demonstrated that applying the principle of maximum information entropy by maximizing the conditional information entropy, subject to the constraint given by the Liouville equation averaged over the phase space, leads to a definition of the rate of entropy change for closed Hamiltonian systems without any additional assumptions. Here, we generalize this basic model and, with the introduction of the additional constraints which are equivalent to the hydrodynamic continuity equations, show that the results obtained are (...) consistent with the known results from the nonequilibrium statistical mechanics and thermodynamics of irreversible processes. In this way, as a part of the approach developed in this paper, the rate of entropy change and entropy production density for the classical Hamiltonian fluid are obtained. The results obtained suggest the general applicability of the foundational principles of predictive statistical mechanics and their importance for the theory of irreversibility. (shrink)

"An important contribution to contemporary jurisprudential debate and to legal thought more generally, Just Interpretations is far ahead of currently available work."--Peter Goodrich, author of Oedipus Lex "I was struck repeatedly by the clarity of expression throughout the book. Rosenfeld's description and criticism of the recent work of leading thinkers distinguishes his work within the legal theory genre. Furthermore, his own theory is quite original and provocative."--Aviam Soifer, author of Law and the Company We Keep.

It is shown here that the microcanonical ensemble for a system of noninteracting bosons and fermions contains a subensemble of state vectors for which all particles of the system are distinguishable. This “IQC” (inner quantum-classical) subensemble is therefore fully classical, except for a rather extreme quantization of particle momentum and position, which appears as the natural price that must be paid for distinguishability. The contribution of the IQC subensemble to the entropy is readily calculated, and the criterion for this to (...) be a good approximation to the exact entropy is a logarithmically strengthened form of the usual criterion for the validity of classical statistics in terms of the thermal de Broglie wavelength and the average volume per particle. Thus, it becomes possible to derive the Maxwell-Boltzmann distribution directly from the ensemble in the classical limit, using fully classical reasoning about the distinguishability of particles. The entropy is additive—theN! factor of the Boltzmann count cancels out in the course of the calculation, and the “N! paradox” is thereby resolved. The method of “correct Boltzmann counting” and the lowest term of the Wigner-Kirkwood series for the partition function are seen to be partly based on the IQC subensemble, and their partly nonclassical nature is clarified. The clear separation in the full ensemble of classical and nonclassical components makes it possible to derive the classical statistics of indistinguishable particles from their quantum statistics in a controlled, explicit way. This is particularly important for nonequilibrium theory. The treatment of molecular collisions along too-literally classical lines turns out to require exorbitantly high temperatures, although there are suggestions of indirect ways in which classical nonequilibrium theory might be justified at ordinary temperatures. The applicability of exact classical ergodic and mixing theory to systems at ordinary temperatures is called into question, although the general idea of coarse-graining is confirmed. The concepts on which the IQC idea is based are shown to give rise to a series development of thermostatistical quantities, starting with the distinguishable-particle approximation. (shrink)

The results of two recent articles expanding the Gibbs variational principle to encompass all of statistical mechanics, in which the role of external sources is made explicit, are utilized to further explicate the theory. Representative applications to nonequilibrium thermodynamics and hydrodynamics are presented, describing several fundamental processes, including hydrodynamic fluctuations. A coherent description of macroscopic relaxation dynamics is provided, along with an exemplary demonstration of the approach to equilibrium in a simple fluid.

This essay is an appreciative engagement with Karl Peters's Dancing with the Sacred (2002). Peters achieves a naturalistic theology of great power. Two themes are covered here. The first is how Peters gives ontological footing for a naturalistic conception of God conceived as the process of creativity in nature. Peters achieves this by conceiving creativity in terms of Darwinian random variation and natural selection combined with the notion of nonequilibrium thermodynamics. He gives ontological reference for a conception of God (...) similar to Henry Nelson Wieman's idea of creative transformation. The second theme is how Peters succeeds in translating this nonpersonal conception of God into a powerful view of naturalistic religion that can shape a religious form of life. The key is that Peters's God can be understood as present in experience. Peters provides naturalistic interpretations of grace and the cruciform structure of creativity; the latter addresses the problem of evil in a nuanced fashion. I conclude with three critical comments about Peters's environmental ethics, his use of the notion of mystery, and his failure to have a robust conception of human fault or sin. (shrink)

Life history theory predicts that greater extrinsic mortality will lead to earlier and higher fertility. To test this prediction, I examine the relationship between life expectancy at birth and several proxies for life history traits (ages at first sex and first marriage, total fertility rate, and ideal number of children), measured for both men and women. Data on sexual behaviors come from the Demographic and Health Surveys (DHS). Two separate samples are analyzed: a cross-sectional sample of 62 countries and (...) a panel sample that includes multiple cross-sectional panels from 48 countries. Multivariate regression analysis is used to control for potential confounding variables. The results provide only partial support for the predictions, with greater support among women than men. However, the prediction is not supported in sub-Saharan African countries, most likely owing to the nonequilibrium conditions observed in sub-Saharan Africa with respect to life expectancy. The applicability of the model to understanding HIV/AIDS risk behaviors is discussed. (shrink)

We have recently developed a new understanding of probability in quantum gravity. In this paper we provide an overview of this new approach and its implications. Adopting the de Broglie–Bohm pilot-wave formulation of quantum physics, we argue that there is no Born rule at the fundamental level of quantum gravity with a non-normalisable Wheeler–DeWitt wave functional \(\Psi\). Instead the universe is in a perpetual state of quantum nonequilibrium with a probability density \(P\ne \left| \Psi \right| ^{2}\). Dynamical relaxation to (...) the Born rule can occur only after the early universe has emerged into a semiclassical or Schrödinger approximation, with a time-dependent and normalisable wave functional \(\psi\), for non-gravitational systems on a classical spacetime background. In that regime the probability density \(\rho\) can relax towards \(\left| \psi \right| ^{2}\) (on a coarse-grained level). Thus the pilot-wave theory of gravitation supports the hypothesis of primordial quantum nonequilibrium, with relaxation to the Born rule taking place soon after the big bang. We also show that quantum-gravitational corrections to the Schrödinger approximation allow quantum nonequilibrium \(\rho \ne \left| \psi \right| ^{2}\) to be created from a prior equilibrium ( \(\rho =\left| \psi \right| ^{2}\) ) state. Such effects are very tiny and difficult to observe in practice. (shrink)

The free energy principle says that any self-organising system that is at nonequilibrium steady-state with its environment must minimize its free energy. It is proposed as a grand unifying principle for cognitive science and biology. The principle can appear cryptic, esoteric, too ambitious, and unfalsifiable—suggesting it would be best to suspend any belief in the principle, and instead focus on individual, more concrete and falsifiable ‘process theories’ for particular biological processes and phenomena like perception, decision and action. Here, I (...) explain the free energy principle, and I argue that it is best understood as offering a conceptual and mathematical analysis of the concept of existence of self-organising systems. This analysis offers a new type of solution to long-standing problems in neurobiology, cognitive science, machine learning and philosophy concerning the possibility of normatively constrained, self-supervised learning and inference. The principle can therefore uniquely serve as a regulatory principle for process theories, to ensure that process theories conforming to it enable self-supervision. This is, at least for those who believe self-supervision is a foundational explanatory task, good reason to believe the free energy principle. (shrink)

Thermodynamics is the foundation of many of the topics of interest in the religion‐science dialogue. Here a nonmathematical outline of the principles of thermodynamics is presented, providing a historical and conceptually understandable development that can serve teachers from disciplines other than physics. The contributions of Gibbs to both classical and rational thermodynamics, emphasizing the importance of the ensemble in statistical mechanics, are discussed. The seminal ideas of Boltzmann on statistical mechanics are contrasted to those of Gibbs in a discussion of (...) the microscopic interpretation of the second law. The role of information theory is discussed, and the modern ideas of Prigogine and nonequilibrium are outlined in some detail with further reference to the second law. Implications for our interaction with God are considered. (shrink)

Context: A central motivation behind various embodied, extended, and enactive (4E) approaches to cognition is to ground our understanding of minds and cognition within the biological structures that give rise to life. Because of this, their advocates often claim a natural kinship with dynamical and developmental systems theories. However, these accounts also explicitly or implicitly privilege individual organisms in ways that contrast with many of the insights of systems and developmental systems approaches to biology. Problem: The prioritization of individual organisms (...) within 4E approaches to cognition contrasts with the default entangled structure of biological systems associated with cognitive agency. We provide means for 4E cognitive science to move beyond an individual-centred view of cognitive agency. Method: We first identify and problematize individual-centredness within various predominant 4E approaches by comparison with biological research and developmental systems theory. Subsequently, we offer conceptual resources from the field of ecological research for understanding cognitive agency beyond the predominant focus on individual organisms. Results: Cognitive agency may be understood without privileging individual organisms by reading nonequilibrium maintenance in terms of a dynamic differentiation instead of individual organismic autonomy. This form of organizational structure corresponds to the notion of sympoiesis from ecological research. Implications: Approaching cognitive agency without privileging individual organisms should be invaluable to advocates of 4E cognition seeking to ground notions of cognition and mind within contemporary biological research. Constructivist content: We seek to expand upon existing constructivist perspectives on the organizing principles of cognitive agency, such as sensorimotor embodiment and autopoiesis, arguing that meta-organismic cognitive agents (including humans) embody distributed relations beyond the privileging of individual organisms. Key words: 4E cognition, autopoiesis, cognitive agency, developmental systems theory, enactivism, extended mind thesis, holobionts, sympoeisis. (shrink)

Science, and with it our understanding of evolutionary processes, is itself undergoing evolution. The evolutionary framework still most frequently used by the general public to describe and guide processes of societal development is erroneously grounded in Darwinian perspectives or, at the very least, draws facile analogies from biological evolution. The present inquiry incorporates fresh insights on the general systemic nature of developmental dynamics from the most recent advances in the transdisciplinary realm of the sciences of complexity (e.g., general evolution (...) class='Hi'>theory, cybernetics, information and communication theory, chaos theory, dynamical systems theory, and nonequilibrium thermodynamics). The description of the evolutionary trajectory of complex dynamical systems as irreversible, periodically chaotic, and strongly nonlinear agrees with certain features of the historical processes of societal development. But there are additional features of the evolutionary dynamic of natural systems that are seldom portrayed as part of human developmental deportment. These features include elements such as the convergence of existing systems at progressively higher levels of organization, the increasingly efficient utilization of environmental energy, and the complexification of system structures in states that are progressively further removed from chemical and thermodynamic equilibria. The sciences of complexity offer insight into the laws and dynamics that govern the evolution of complex systems across a variety of disciplinary areas of investigation. Through a study of the isomorphisms across disciplinary constructs in the theoretical analyses of the principles governing the evolution of human societies, it is possible to enrich the account of developmental dynamics at the socio-civilizational level. Such an account would further our understanding of the phenomenon of societal development and provide the means for the purposeful guidance of this phenomenon in accordance with general evolutionary principles. This article sets forth the type of considerations, and outlines a general research agenda, for inquiry toward an operational model of the evolutionary development of social systems. (shrink)

The Darwinian concept of natural selection was conceived within a set of Newtonian background assumptions about systems dynamics. Mendelian genetics at first did not sit well with the gradualist assumptions of the Darwinian theory. Eventually, however, Mendelism and Darwinism were fused by reformulating natural selection in statistical terms. This reflected a shift to a more probabilistic set of background assumptions based upon Boltzmannian systems dynamics. Recent developments in molecular genetics and paleontology have put pressure on Darwinism once again. Current (...) work on self-organizing systems may provide a stimulus not only for increased problem solving within the Darwinian tradition, especially with respect to origins of life, developmental genetics, phylogenetic pattern, and energy-flow ecology, but for deeper understanding of the very phenomenon of natural selection itself. Since self-organizational phenomena depend deeply on stochastic processes, self-organizational systems dynamics advance the probability revolution. In our view, natural selection is an emergent phenomenon of physical and chemical selection. These developments suggest that natural selection may be grounded in physical law more deeply than is allowed by advocates of the autonomy of biology, while still making it possible to deny, with autonomists, that evolutionary explanations can be modeled in terms of a deductive relationship between laws and cases. We explore the relationship between, chance, self-organization, and selection as sources of order in biological systems in order to make these points. (shrink)

In the last few decades we have become aware of the ecological problem, a problem of unprecedented scale and urgency. It consists of the danger that within our or the succeeding generation all life on earth, including the human species, will become extinct. This possibility rests on the one hand on the conspicuous changes in the global environment that are being effeted by human activity and, on the other, on a new physical theory of nonequilibrium thermodynamics. According to (...) this discipline, complex dynamic systems like the earth's biosphere are extremely unstable. When internal or external fluctuations exceed a certain threshold, such systems collapse into a state of chaos, the outcome of which is in principle unpredictable. The new systems that emerge from chaos are more complex, flexible, and efficient in utilizing free energy, but their components and structure cannot be foreseen. By applying this theory to our biosphere we can infer that if the man-caused disturbances in it exceed a certain level, the biosphere will break down and, eventually, a radically different environment will form. Such catastrophes have already occurred in the course of evolution, wiping out chains of interdependent species and restructuring the biosphere. As two of our authors—V. I. Kurashov and V. I. Danilov-Danil'ian—point out, the fact that we cannot determine our biosphere's threshold and predict at what point the biosphere will descend into chaos is no comfort; on the contrary, it makes our situation all the more dangerous. It is clear that we must immediately drastically reduce our impact on the natural environment. How to do so is not at all clear. (shrink)

The notion of the value of information is discussed. The value one attributes to information is determined by the result of its reception by an open nonequilibrium system. Qualitative reasoning shows that the concept of value of information makes sense only in nonequilibrium situations, and is directly connected with the nonredundancy of information. In biology it is the value and not the amount of information that is important. The value of information is especially high if there are instabilities (...) in the system; these are connected with the notions of purpose and of freedom of will. The notion of selective value, introduced by Eigen in the theory of the prebiological evolution of macromolecules, is discussed. The amount of information in various codons is calculated and the conventional definition of its value is given based on the determination of the danger of the replacement of one amino acid by another with a different value of hydrophobicity. It is shown that the relative probability of transversion is considerably lower than that of transition. As most nonsense mutations are transversions, the genetic code provides decreased probability for the most dangerous mutations. It is shown that the information of the codonUGG(Trp) is highest in both amount and value. (shrink)

We consider the relativistic statistical mechanics of an ensemble of N events with motion in space-time parametrized by an invariant “historical time” τ. We generalize the approach of Yang and Yao, based on the Wigner distribution functions and the Bogoliubov hypotheses to find approximate dynamical equations for the kinetic state of any nonequilibrium system, to the relativistic case, and obtain a manifestly covariant Boltzmann- type equation which is a relativistic generalization of the Boltzmann-Uehling-Uhlenbeck (BUU) equation for indistinguishable particles. This (...) equation is then used to prove the H-theorem for evolution in τ. In the equilibrium limit, the covariant forms of the standard statistical mechanical distributions are obtained. We introduce two-body interactions by means of the direct action potential V(q), where q is an invariant distance in the Minkowski space-time. The two- body correlations are taken to have the support in a relative O(2, 1)-invariant subregion of the full spacelike region. The expressions for the energy density and pressure are obtained and shown to have the same forms (in terms of an invariant distance parameter) as those of the nonrelativistic theory and to provide the correct nonrelativistic limit. (shrink)

Explaining the emergence of stochastic irreversible macroscopic dynamics from time-reversible deterministic microscopic dynamics is one of the key problems in philosophy of physics. The Mori-Zwanzig projection operator formalism, which is one of the most important methods of modern nonequilibrium statistical mechanics, allows for a systematic derivation of irreversible transport equations from reversible microdynamics and thus provides a useful framework for understanding this issue. However, discussions of the MZ formalism in philosophy of physics tend to focus on simple variants rather (...) than on the more sophisticated ones used in modern physical research. In this work, I will close this gap by studying the problems of probability and irreversibility using the example of Grabert’s time-dependent projection operator formalism. This allows to better understand how general proposals for understanding probability in statistical mechanics, namely quantum approaches and almost-objective probabilities, can be accomodated in the MZ formalism. Moreover, I will provide a detailed physical analysis, based on the MZ formalism, of various proposals from the philosophical literature, such as Robertson’s theory of justifying coarse-graining via autonomous macrodynamics, Myrvold’s problem of explaining autonomous macrodynamics, and Wallace’s simple dynamical conjecture. (shrink)

In 2000, a simple, foundational thermodynamic paradox was proposed: a sealed blackbody cavity contains a diatomic gas and a radiometer whose apposing vane surfaces dissociate and recombine the gas to different degrees (A $_{2} \rightleftharpoons $ 2A). As a result of differing desorption rates for A and A $_{2}$ , there arise between the vane faces permanent pressure and temperature differences, either of which can be harnessed to perform work, in apparent conflict with the second law of thermodynamics. Here we (...) report on the first experimental realization of this paradox, involving the dissociation of low-pressure hydrogen gas on high-temperature refractory metals (tungsten and rhenium) under blackbody cavity conditions. The results, corroborated by other laboratory studies and supported by theory, confirm the paradoxical temperature difference and point to physics beyond the traditional understanding of the second law. (shrink)

Long-term vegetation dynamics based on paleo-pollen data display transient behaviour, often alternating in phase between predominant determinism and predominant 'turbulence', when viewed as a trajectory in a multivariate phase space. Given this, the metaphor of vegetation dynamics as a 'flowing stream', first introduced by Cooper in his classic 1926 paper entitled "The fundamentals of vegetation change", is re-examined and revealed to be not only useful, but strikingly realistic. Vegetation dynamic theory is reviewed and classic theories are found to reflect (...) reality poorly. It is suggested that vegetation dynamics is a far from equilibrium system, and that the application of nonequilibrium thermodynamic theory is appropriate. (shrink)