Results for 'protocell'

30 found
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  1.  22
    Protocells as smart agents for architectural design.Martin M. Hanczyc & Takashi Ikegami - 2009 - Technoetic Arts 7 (2):117-120.
    Simple chemical agents with lifelike properties can be termed a protocell, meaning the earliest form of a natural living cell. These agents are not necessarily alive but are examples of living technology, namely technology that possesses lifelike qualities. Given that the protocell can respond to environmental cues with directional and controlled movement it can be thought of as being able to make decisions whilst navigating through a complex environment. In this way a mobile protocell agent can be (...)
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  2.  24
    Building artificial cells and protocell models: Experimental approaches with lipid vesicles.Peter Walde - 2010 - Bioessays 32 (4):296-303.
    Lipid vesicles are often used as compartment structures for preparing cell‐like systems and models of protocells, the hypothetical precursor structures of the first cells at the origin of life. Although the various artificially made vesicle systems are already remarkably complex, they are still very different from and much simpler than any known living cell. Nevertheless, the preparation and study of the structure and the dynamics of functionalized vesicle systems may contribute to a better understanding of biological cells, in particular of (...)
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  3.  19
    Protocells: Bridging Nonliving and Living Matter (review).Roberto Serra - 2010 - Perspectives in Biology and Medicine 53 (4):651-653.
  4.  11
    Computing with Synthetic Protocells.Alexis Courbet, Franck Molina & Patrick Amar - 2015 - Acta Biotheoretica 63 (3):309-323.
    In this article we present a new kind of computing device that uses biochemical reactions networks as building blocks to implement logic gates. The architecture of a computing machine relies on these generic and composable building blocks, computation units, that can be used in multiple instances to perform complex boolean functions. Standard logical operations are implemented by biochemical networks, encapsulated and insulated within synthetic vesicles called protocells. These protocells are capable of exchanging energy and information with each other through transmembrane (...)
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  5.  34
    Introduction. Artificial protocells.Steen Rasmussen & Marc Bedau - unknown
    What makes a cell? How are cells able to replicate themselves in a stable manner? How did cellular life emerge on our planet? The answer to these fundamental questions lies at the base of biology. Cellular life is the basic unit of living organization and defines the presence of a stable information reservoir connected through the external world by a well-defined boundary. Inside the cell, chains of computations and chemical reactions take place, sustained by self-assembled molecular machines. At the cell (...)
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  6.  20
    Computing with Synthetic Protocells.Angélique Stéphanou & Nicolas Glade - 2015 - Acta Biotheoretica 63 (3):309-323.
    In this article we present a new kind of computing device that uses biochemical reactions networks as building blocks to implement logic gates. The architecture of a computing machine relies on these generic and composable building blocks, computation units, that can be used in multiple instances to perform complex boolean functions. Standard logical operations are implemented by biochemical networks, encapsulated and insulated within synthetic vesicles called protocells. These protocells are capable of exchanging energy and information with each other through transmembrane (...)
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  7.  40
    Toward a Macroevolutionary Theory of Human Evolution: The Social Protocell.Claes Andersson & Petter Törnberg - 2019 - Biological Theory 14 (2):86-102.
    Despite remarkable empirical and methodological advances, our theoretical understanding of the evolutionary processes that made us human remains fragmented and contentious. Here, we make the radical proposition that the cultural communities within which Homo emerged may be understood as a novel exotic form of organism. The argument begins from a deep congruence between robust features of Pan community life cycles and protocell models of the origins of life. We argue that if a cultural tradition, meeting certain requirements, arises in (...)
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  8. Mark A. Bedau and Emily C. Parke : The Ethics of Protocells: Moral and Social Implications of Creating Life in the Laboratory : MIT Press, Cambridge, MA, 2009, 365 pp, ISBN 978-0-262-01262-1, ISBN 978-0-262-51269-5.John P. Sullins - 2012 - Acta Biotheoretica 60 (3):329-332.
    A review with commentary on Mark A. Bedau and Emily C. Parke (eds): The Ethics of Protocells: Moral and Social Implications of Creating Life in the Laboratory (Basic Bioethics series) MIT Press, Cambridge,MA, 2009, 365 pp, ISBN 978-0-262-01262-1, ISBN 978-0-262-51269-5.
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  9.  13
    Toward a Macroevolutionary Theory of Human Evolution: The Social Protocell.Claes Andersson & Petter Törnberg - 2019 - Biological Theory 14 (2):86-102.
    Despite remarkable empirical and methodological advances, our theoretical understanding of the evolutionary processes that made us human remains fragmented and contentious. Here, we make the radical proposition that the cultural communities within which Homo emerged may be understood as a novel exotic form of organism. The argument begins from a deep congruence between robust features of Pan community life cycles and protocell models of the origins of life. We argue that if a cultural tradition, meeting certain requirements, arises in (...)
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  10.  25
    Self-Organizing Dynamics of a Minimal Protocell.Walter Riofrio - 2008 - Proceedings of the Xxii World Congress of Philosophy 43:185-191.
    In this paper, we present an argument showing why the general properties of a self-organizing system (e.g. being far from equilibrium) may be too weak to characterize biological and proto-biological systems. The special character of biological systems, tell us that its distinctive capacities could have been developed in pre-biotic times. In other words, the basic properties of life would be better comprehended if we think that they were much more likely early in time. We developed a conceptual proposal on the (...)
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  11.  23
    An asterisk denotes a publication by a member of the American Catholic Philosophical Association. The Editors welcome suggestions for reviews. Bedau, Mark A., and Emily C. Parke, eds. The Ethics of Protocells: Moral and Social Implications of Creating Life in the Laboratory. Cambridge, Mass. and London: MIT Press, 2009. Pp. x+ 368. Paper $28.00, ISBN: 978-0-262-51269-5. [REVIEW]Joseph A. Bracken, Rémi Brague, J. Budziszewski & Stratford Caldecott - 2009 - American Catholic Philosophical Quarterly 83 (3).
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  12. How functional differentiation originated in prebiotic evolution.Argyris Arnellos & Álvaro Moreno - 2012 - Ludus Vitalis 20 (37):1-23.
    Even the simplest cell exhibits a high degree of functional differentiation (FD) realized through several mechanisms and devices contributing differently to its maintenance. Searching for the origin of FD, we briefly argue that the emergence of the respective organizational complexity cannot be the result of either natural selection (NS) or solely of the dynamics of simple self-maintaining (SM) systems. Accordingly, a highly gradual and cumulative process should have been necessary for the transition from either simple self-assembled or self-maintaining systems of (...)
     
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  13.  27
    How did bacterial ancestors reproduce? Lessons from L‐form cells and giant lipid vesicles.Yves Briers, Peter Walde, Markus Schuppler & Martin J. Loessner - 2012 - Bioessays 34 (12):1078-1084.
    In possible scenarios on the origin of life, protocells represent the precursors of the first living cells. To study such hypothetical protocells, giant vesicles are being widely used as a simple model. Lipid vesicles can undergo complex morphological changes enabling self‐reproduction such as growth, fission, and extra‐ and intravesicular budding. These properties of vesicular systems may in some way reflect the mechanism of reproduction used by protocells. Moreover, remarkable similarities exist between the morphological changes observed in giant vesicles and bacterial (...)
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  14.  46
    Knowledge-Making Distinctions in Synthetic Biology.Maureen A. O'Malley, Alexander Powell, Jonathan F. Davies & Jane Calvert - 2008 - Bioessays 30 (1):57-65.
    Synthetic biology is an increasingly high-profile area of research that can be understood as encompassing three broad approaches towards the synthesis of living systems: DNA-based device construction, genome-driven cell engineering and protocell creation. Each approach is characterized by different aims, methods and constructs, in addition to a range of positions on intellectual property and regulatory regimes. We identify subtle but important differences between the schools in relation to their treatments of genetic determinism, cellular context and complexity. These distinctions tie (...)
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  15.  7
    A scenario for the origin of life: Volume regulation by bacteriorhodopsin required extremely voltage sensitive Na‐channels and very selective K‐channels.David Naranjo - 2022 - Bioessays 44 (10):2100210.
    The osmotic activity produced by internal, non‐permeable, anionic nucleic acids and metabolites causes a persistent and life‐threatening cell swelling, or cellular edema, produced by the Gibbs‐Donnan effect. This evolutionary‐critical osmotic challenge must have been resolved by LUCA or its ancestors, but we lack a cell‐physiology look into the biophysical constraints to the solutions. Like mycoplasma, early cells conceivably preserved their volume with Cl−, Na+, and K+‐channels, Na+/H+‐exchangers, and a light‐dependent bacteriorhodopsin‐like H+‐pump. Here, I simulated protocells having these ionic‐permeabilities and inhabiting (...)
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  16.  91
    Knowledge‐making distinctions in synthetic biology.Maureen A. O'Malley, Alexander Powell, Jonathan F. Davies & Jane Calvert - 2008 - Bioessays 30 (1):57-65.
    Synthetic biology is an increasingly high‐profile area of research that can be understood as encompassing three broad approaches towards the synthesis of living systems: DNA‐based device construction, genome‐driven cell engineering and protocell creation. Each approach is characterized by different aims, methods and constructs, in addition to a range of positions on intellectual property and regulatory regimes. We identify subtle but important differences between the schools in relation to their treatments of genetic determinism, cellular context and complexity. These distinctions tie (...)
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  17. A functional account of degrees of minimal chemical life.Mark A. Bedau - 2012 - Synthese 185 (1):73-88.
    This paper describes and defends the view that minimal chemical life essentially involves the chemical integration of three chemical functionalities: containment, metabolism, and program (Rasmussen et al. in Protocells: bridging nonliving and living matter, 2009a ). This view is illustrated and explained with the help of CMP and Rasmussen diagrams (Rasmussen et al. In: Rasmussen et al. (eds.) in Protocells: bridging nonliving and living matter, 71–100, 2009b ), both of which represent the key chemical functional dependencies among containment, metabolism, and (...)
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  18. Interactive Models in Synthetic Biology: Exploring Biological and Cognitive Inter-Identities.Leonardo Bich - 2020 - Frontiers in Psychology 11.
    The aim of this article is to investigate the relevance and implications of synthetic models for the study of the interactive dimension of minimal life and cognition, by taking into consideration how the use of artificial systems may contribute to an understanding of the way in which interactions may affect or even contribute to shape biological identities. To do so, this article analyzes experimental work in synthetic biology on different types of interactions between artificial and natural systems, more specifically: between (...)
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  19.  20
    Did Human Culture Emerge in a Cultural Evolutionary Transition in Individuality?Dinah R. Davison, Claes Andersson, Richard E. Michod & Steven L. Kuhn - 2021 - Biological Theory 16 (4):213-236.
    Evolutionary Transitions in Individuality have been responsible for the major transitions in levels of selection and individuality in natural history, such as the origins of prokaryotic and eukaryotic cells, multicellular organisms, and eusocial insects. The integrated hierarchical organization of life thereby emerged as groups of individuals repeatedly evolved into new and more complex kinds of individuals. The Social Protocell Hypothesis proposes that the integrated hierarchical organization of human culture can also be understood as the outcome of an ETI—one that (...)
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  20.  21
    Arxiv.Org > nlin > arxiv:Nlin/0512025.Liane Gabora - manuscript
    The improbability of a spontaneously generated self-assembling molecule has suggested that life began with a set of simpler, collectively replicating elements, such as an enclosed autocatalytic set of polymers (or protocell). Since replication occurs without a self-assembly code, acquired characteristics are inherited. Moreover, there is no strict distinction between alive and dead; one can only infer that a protocell was alive if it replicates. These features of early life render natural selection inapplicable to the description of its change-of-state (...)
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  21.  96
    Evolution at the Origins of Life?Ludo L. J. Schoenmakers, Thomas A. C. Reydon & Andreas Kirschning - 2024 - Life 14 (2).
    The role of evolutionary theory at the origin of life is an extensively debated topic. The origin and early development of life is usually separated into a prebiotic phase and a protocellular phase, ultimately leading to the Last Universal Common Ancestor. Most likely, the Last Universal Common Ancestor was subject to Darwinian evolution, but the question remains to what extent Darwinian evolution applies to the prebiotic and protocellular phases. In this review, we reflect on the current status of evolutionary theory (...)
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  22.  89
    Introduction to philosophical problems about life.Mark A. Bedau - 2012 - Synthese 185 (1):1-3.
    This paper describes and defends the view that minimal chemical life essentially involves the chemical integration of three chemical functionalities: containment, metabolism, and program. This view is illustrated and explained with the help of CMP and Rasmussen diagrams in Protocells: bridging nonliving and living matter, 71–100, 2009b), both of which represent the key chemical functional dependencies among containment, metabolism, and program. The CMP model of minimal chemical life gains some support from the broad view of life as open-ended evolution, which (...)
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  23.  37
    On the Evolutionary Development of Biological Organization from Complex Prebiotic Chemistry.Kepa Ruiz-Mirazo & Alvaro Moreno - 2023 - In Matteo Mossio (ed.), Organization in Biology. Springer. pp. 187-218.
    In this chapter we offer a critical analysis of organizational models about the process of origins of life and, thereby, a reflection about life itself (understood in a general, minimal sense). We begin by demarcating the idea of organization as an explanatory construct, linking it to the complex relationships and transformations that the material parts of (proto-)biological systems establish to maintain themselves under non-equilibrium dynamic conditions. The diverse ways in which this basic idea has been applied within the prebiotic field (...)
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  24. Lifeness signatures and the roots of the tree of life.Christophe Malaterre - 2010 - Biology and Philosophy 25 (4):643-658.
    Do trees of life have roots? What do these roots look like? In this contribution, I argue that research on the origins of life might offer glimpses on the topology of these very roots. More specifically, I argue (1) that the roots of the tree of life go well below the level of the commonly mentioned ‘ancestral organisms’ down into the level of much simpler, minimally living entities that might be referred to as ‘protoliving systems’, and (2) that further below, (...)
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  25.  25
    Ageing as a price of cooperation and complexity.Huba J. M. Kiss, Ágoston Mihalik, Tibor Nánási, Bálint Őry, Zoltán Spiró, Csaba Sőti & Peter Csermely - 2009 - Bioessays 31 (6):651-664.
    The network concept is increasingly used for the description of complex systems. Here, we summarize key aspects of the evolvability and robustness of the hierarchical network set of macromolecules, cells, organisms and ecosystems. Listing the costs and benefits of cooperation as a necessary behaviour to build this network hierarchy, we outline the major hypothesis of the paper: the emergence of hierarchical complexity needs cooperation leading to the ageing (i.e. gradual deterioration) of the constituent networks. A stable environment develops cooperation leading (...)
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  26.  20
    The 200-Year Continuum.Christian Kerrigan - 2009 - Technoetic Arts 7 (2):121-132.
    The 200-Year Continuum is the producer, recorder and exhibitor in Christian Kerrigan's advancing anthology of narratives. Central to Kerrigan's practice is storytelling and myth-making as a means of engaging his audience. Kerrigan uses drawing as his primary mode of research into these narratives which are consequently offered in the form of live Internet feed installations acting as ecological sites, collaborative scientific experiments introducing new organic technologies and digital images of worlds unseen. Each addition acts as a middle story within The (...)
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  27.  20
    Synthetic cells and organelles: compartmentalization strategies.Renée Roodbeen & Jan C. M. van Hest - 2009 - Bioessays 31 (12):1299-1308.
    The recent development of RNA replicating protocells and capsules that enclose complex biosynthetic cascade reactions are encouraging signs that we are gradually getting better at mastering the complexity of biological systems. The road to truly cellular compartments is still very long, but concrete progress is being made. Compartmentalization is a crucial natural methodology to enable control over biological processes occurring within the living cell. In fact, compartmentalization has been considered by some theories to be instrumental in the creation of life. (...)
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  28.  17
    Pre-Darwinian Evolution Before LUCA.Shiping Tang - 2020 - Biological Theory 15 (4):175-179.
    If the coming of the last universal cellular ancestor marks the crossing of the “Darwinian Threshold”, pre-LUCA evolution must have been pre-Darwinian. But how did pre-Darwinian evolution actually operate? Bringing together and extending insights from both earlier and more recent contributions, this essay advances three principal arguments regarding the pre-Darwinian evolution. First, in the pre-Darwinian epoch, survival essentially meant persistence within the prebiotic system, and it depended mostly on chemical variation and interaction. Second, selection operated upon four different properties: chemical; (...)
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  29.  99
    Weak emergence drives the science, epistemology, and metaphysics of synthetic biology.Mark A. Bedau - 2013 - Biological Theory 8 (4):334-345.
    Top-down synthetic biology makes partly synthetic cells by redesigning simple natural forms of life, and bottom-up synthetic biology aims to make fully synthetic cells using only entirely nonliving components. Within synthetic biology the notions of complexity and emergence are quite controversial, but the imprecision of key notions makes the discussion inconclusive. I employ a precise notion of weak emergent property, which is a robust characteristic of the behavior of complex bottom-up causal webs, where a complex causal web is one that (...)
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  30.  40
    Studies on Molecular Mechanisms of Prebiotic Systems.Walter Riofrio - 2012 - Foundations of Science 17 (3):277-289.
    Lately there has been a growing interest in evolutionary studies concerning how the regularities and patterns found in the living cell could have emerged spontaneously by way of self-assembly and self-organization. It is reasonable to postulate that the chemical compounds found in the primitive Earth would have mostly been very simple in nature, and would have been immersed in the natural dynamics of the physical world, some of which would have involved self-organization. It seems likely that some molecular processes self-organized (...)
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