Though science and philosophy take different approaches to ontology, metaphysical inferences are relevant to interpreting scientific work, and empirical investigations are relevant to philosophy. This book argues that there is no uniquely rational way to determine which domains of ontology are appropriate for belief, making room for choice in a transformative account of scientific ontology.

Both science and philosophy are interested in questions of ontology- questions about what exists and what these things are like. Science and philosophy, however, seem like very different ways of investigating the world, so how should one proceed? Some defer to the sciences, conceived as something apart from philosophy, and others to metaphysics, conceived as something apart from science, for certain kinds of answers. This book contends that these sorts of deference are misconceived. A compelling account of ontology must appreciate (...) the ways in which the sciences incorporate metaphysical assumptions and arguments. At the same time, it must pay careful attention to how observation, experience, and the empirical dimensions of science are related to what may be viewed as defensible philosophical theorizing about ontology. The promise of an effectively naturalized metaphysics is to encourage beliefs that are formed in ways that do justice to scientific theorizing, modeling, and experimentation. But even armed with such a view, there is no one, uniquely rational way to draw lines between domains of ontology that are suitable for belief, and ones in which it would be better to suspend belief instead. In crucial respects, ontology is in the eye of the beholder: it is Informed by underlying commitments with implications for the limits of inquiry, which inevitably vary across rational inquirers. As a result, the proper scope of ontology is subject to a striking form of voluntary choice, yielding a new and transformative conception of scientific ontology. (shrink)

Philosophers frequently struggle with the relation of metaphysics to the everyday world, with its practical value, and with its relation to empirical science. This paper distinguishes several different models of the relation between philosophical ontology and applied (scientific) ontology that have been advanced in the history of philosopy. Adoption of a strong participation model for the philosophical ontologist in science is urged, and requirements and consequences of the participation model are explored. This approach provides both a principled view and justification (...) of the role of the philosophical ontologist in contemporary empirical science as well as guidelines for integrating philosophers and philosophical contributions into the practice of science. (shrink)

The modal properties of the principle of the causal closure of the physical have traditionally been said to prevent anything outside the physical world from affecting the physical universe and vice versa. This idea has been shown to be relative to the definition of the principle. A traditional definition prevents the one universe from affecting any other universe, but with a modified definition, e.g., the causal closure of the physical can be consistent with the possibility of one universe affecting the (...) other universe. Gamper proved this modal property by implementing interfaces between universes. Interfaces are thus possible, but are they realistic? To answer this question, I propose a two-step process where the second step is scientific research. The first step, however, is to fill the gap between the principles or basic assumptions and science with a consistent theoretical framework that accommodates the modal properties of an ontology that matches the basic assumptions. (shrink)

Our best sciences are frequently held to be one way, perhaps the optimal way, to learn about the world’s higher-level ontology and structure. I first argue that which scientific theory is “best” depends in part on our goals or purposes. As a result, it is theoretically possible to have two scientific theories of the same domain, where each theory is best for some goal, but where the two theories posit incompatible ontologies. That is, it is possible for us to have (...) goal-dependent pluralism in our scientific ontologies. This ontological pluralism arises simply from our inability to directly know the world’s objects, rather than any particular claims about our cognitive limits, values, or social structures. I then present two case studies in which this possibility actually occurs—one based on simulations and theoretical analyses of constructed causal systems, and one from actual scientific investigations into the proper ontology for ocean regions. (shrink)