My aim in this commentary article is to observe and comment on some of the main conceptual and methodological continuities and discontinuities between recent biosemiotics-informed learning theory and the model of Unlimited Associative Learning (UAL) that Jablonka and Ginsburg ( 2022 ) present in this Target Article. UAL as a model, presents important synthesis and clarity around the ecological context and evolutionary dynamics underlying learning, with a wide range of implications. Still, there are conceptual “grey areas” that the authors themselves (...) note and that biosemiotics in particular has problematized in various ways. I highlight the general challenge of defining minimal consciousness in relation to a concept of minimal Umwelt, as well as the issue of animal cultures, and the transition from UAL to symbolic-cognition and human language, making connections to the evolution of hominin musicking capacities. (shrink)

In the 1940s, the ‘modern synthesis’ (MS) of Darwinism and genetics cast genetic mutation and recombination as the source of variability from which environmental events naturally select the fittest, such ‘natural selection’ constituting the cause of evolution. Recent biology increasingly challenges this view by casting genes as followers and awarding the leading role in the genesis of adaptations to the agency and plasticity of developing phenotypes—making natural selection a consequence of other causal processes. Both views of natural selection claim to (...) capture the core of Darwin’s arguments in On the Origin of Species. Today, historians largely concur with the MS’s reading of Origin as a book aimed to prove natural selection the cause (vera causa) of adaptive change. This paper finds the evidence for that conclusion wanting. I undertake to examine the context and meaning of all Darwin’s known uses of the phrase vera causa, documenting in particular Darwin’s resistance to the pressure to prove natural selection a vera causa in letters written early in 1860. His resistance underlines the logical dependence of natural selection, an unobservable phenomenon, on the causal processes producing the observable events captured by the laws of inheritance, variation, and the struggle for existence, established in Chapters 1–3 of Origin. (shrink)

Metaphors involve immense explanatory power and positive impact predominantly in the scientific education and popularization. Still the use of metaphors in science might be a double-edged sword. Introduction of the computer metaphor to many scientific fields in the last century resulted in reductionist approaches, oversimplifications and mechanistic explanations in science as well as in humanities. In this short commentary we developed further the computer metaphor by prof. Noble and the illusions this metaphor led to in genetics, linguistics and consequently DNA (...) linguistics. (shrink)

The foundations of biology have been a topic of debate for the past few decades. The traditional perspective of the Modern Synthesis, which portrays organisms as passive entities with limited role in evolutionary theory, is giving way to a new paradigm where organisms are recognized as active agents, actively shaping their own phenotypic traits for adaptive purposes. Within this context, this article raises the question of whether contemporary biological theory is undergoing a cognitive revolution. This inquiry can be approached in (...) two ways: from a theoretical standpoint, exploring the centrality of the cognitive sciences in current theoretical biology; and from a historical perspective, examining the resemblance between the current state of theoretical biology and the Cognitive Revolution of the mid-20th century. Both inquiries yield affirmative answers, though important nuances will be emphasized. The cognitive sciences' explanatory framework is employed to elucidate the agentic characteristics of organisms, establishing a clear parallelism between the Cognitive Revolution and the present state of theoretical biology. (shrink)

Denis Noble suggests that biologists who created the Modern Synthesis were taken in by conceptual traps and illusions hidden in the language they used. Rather than blame language itself, my response counters that all writers are responsible for careful attention to the implications of the metaphors they use, and that Richard Dawkins deliberately chose “the selfish gene.” Noble’s concept of biological relativity restores Darwin’s fuller and more nuanced definition of natural selection and shows how it also accounts for Lamarck’s assertion (...) that acquired characteristics can be inherited. Biological relativity is supported by Maurice Merleau- Ponty’s chiasmic ontology. (shrink)

Noble rightly emphasizes that some modern evolutionary biologists´ neglect of agency is consequential with regard to our understanding of the natural world and real-world ecological developments. I elaborate on biosemiotic ideas on semiotic agency and explain how organisms can change the environment by way of semiotic causation. I also comment on the human language’s role in human Umwelten, and how our linguistically mediated reality can be self-deceptive – as if we lived in a bubble of our own making. Finally, I (...) indicate how we can make the Umwelt bubble of the Modern Synthesis burst. (shrink)

The article explores a change taking place today in the fields of biology and social anthropology, signaling a shared desire to transcend the heuristic effects of the opposition between nature and culture. Acceptance of the idea that random mutations are the sole driving force behind the process of natural selection overlooks the agentive capacity of non-human living beings, revealing an anthropocentric inspiration. To critique the rhetoric surrounding the principle of natural selection, I turn to the anthropology of Tim Ingold and (...) his analysis of the metaphors that illustrate the principle. I disagree with the author, however, when he argues that these metaphors do not adequately illustrate neo-Darwinian premises. Instead, I believe that they are faithful since their apparent contradiction expresses the unease of neo-Darwinian theory itself when it combines randomness and teleology. New currents in biology, such as biosemiotics, attribute evolutionary importance to epigenetic changes. From the evolutionary perspective, they also highlight the importance of recognizing that the entire lived world possesses the capacity for agency, not just human beings. Within social anthropology, the so-called ontological turn and multispecies ethnography have been working with a new conception of the person, extendible to non-human beings, including the latter to compose a single collective with humans. Thus we can observe an attempt on the part of biologists and anthropologists alike to move beyond anthropocentrism, producer and product of the opposition between nature and culture. (shrink)

Denis Noble convincingly describes the artifacts of theory building in the Modern Synthesis as having been surpassed by the available evidence, indicating more active and less gene-centric evolutionary processes than previously thought. We diagnosis the failure of theory holders to dutifully update their beliefs according to new findings as a microcosm of the prevailing larger social inability to deal with competing paradigms. For understanding life, Noble suggests that there is no privileged level of semiotic interpretation. Understanding multi-level semiosis along with (...) organism and environment contrapunctally, according to Jakob von Uexküll’s theoretical biology, can contribute to the emerging extended evolutionary synthesis. (shrink)

Charles S. Peirce’s philosophy of signs, generally construed as the foundation of current semiotic theory, offers a theory of general perception with significant implications for the notion of subjectivity in organisms. In this article, we will discuss Peirce’s primary claims in semiotic theory, particularly focusing on their relevance to biosemiotics. We argue that these claims align with certain areas of the philosophy of biology, specifically epistemological and ontological considerations, despite the limited formal interaction between disciplines. This article serves as a (...) general introduction to Peircean biosemiotics as a philosophical perspective on biological subjectivity. (shrink)

The Weismann Barrier and the Central Dogma do not protect the assumptions of The Modern Synthesis.

Taking advantage of Denis Noble’s description, in “The Illusions of the Modern Synthesis” of the first illusion, related to the concept of natural selection itself, I will further strengthen the criticism by adding three groups of considerations mainly concerning human cognition: 1) how semiotic brains build cognitive niches; 2) the role of abduction – and in particular of manipulative abduction – in building a semiotic artificial world; 3) the biosemiotics of the so-called disembodiment of the mind. Human semiotic brains are (...) engaged in a continuous process of delegation and distribution of cognitive functions to the environment to lessen cognitive limitations, also and especially taking advantage of what I have called “manipulative abduction”. These design semiotic activities are closely related to the process of cognitive niche construction, which should be regarded as the second major participant, after natural selection, in evolution. An important effect of this semiotic brain activity is a continuous process of disembodiment of the mind that exhibits a new cognitive perspective on the mechanisms underlying the semiotic emergence of meaning processes. (shrink)

In this paper, I present an argument that quantitative behavioural analysis can be used in zoosemiotic studies to advance the field of biosemiotics. The premise is that signs and signals form patterns in space and time, which can be measured and analysed mathematically. Whole organism sign processing is an important component of the semiosphere, with individual organisms in their Umwelten deriving signs from, and contributing to, the semiosphere, and vice versa. Moreover, there is a wealth of data available in the (...) traditional ethology literature which can be reinterpreted semiotically and drawn together to make a cohesive biosemiotic whole. For example, isolated signals, such as structural elements of birdsong, are attributed meaning by an interpreter, thus generating new ideas and hypotheses in both biology and semiotics. Furthermore, animal behaviour science has developed numerous test paradigms that with careful adaptation, could be suitable for use within a Peircean tripartite model, and thus give valuable insights into Umwelten of other species. In my conclusion, I suggest that by bringing together traditional ethology and biosemiotics, it is possible to use the Modern Synthesis to provide context to biosemiosis, thus pragmatic meaning to animal signals. On this basis, I propose updating the Modern Synthesis to a Semiotic Modern Synthesis, which focuses on whole-organism signals and their contexts, the latter being derived from neo-Darwinian theory and the ‘Umwelt’. Thus, there need be no dichotomy; the Modern Synthesis can successfully be integrated with biosemiotics. (shrink)

Teleological theories are often dismissed in the study of animal behaviour, because of both the anthropomorphic element, and the paradox of retro-causation. Instead, emergent properties of animal systems, such as those which drive behaviour and decision making, are generally deemed to be non-purposeful. Nonetheless, organisms’ interactions with the environment, including sensory processing, have long been subject to biological study, and the resulting models include Jakob von Uexküll’s functional circle (part of his ‘Umwelt Theory’). The functional circle is modelled on an (...) assumption of three- dimensional space containing matter and energy, and one-dimensional, linear time. Moreover, the function of such models relies upon feedback within biological systems, and generally assume that the functional feedback loops close. I argue that this is impossible, because a feedback loop cannot go back intime to close itself, and so whilst it may approximate closure in space, it does not close in the dimension of time. To address this problem, I propose a conceptual model where time is treated as having a three- dimensional structure, and is measured in terms of past, future, and subjective present, termed the ‘period,’ ‘present’ and ‘phase,’ respectively. Space and matter, meanwhile, occur as a two- dimensional intersect, in which three-dimensional emergent properties which occur ion time are embedded. The model relies on functional helices rather than circles, and the loops of each helix (unlike circular loops) never achieve closure. I explain how this therefore results in a biological system, based on both feedback and anticipatory probabilities, which is both autopoietic and teleological. I also provide examples of how the concept can be applied, using foraging behaviour as an example. I further propose the theoretical origin of such a system is ‘timing’ and ‘rhythm,’ both of which I argue have their origins in single cellular organisms’ chemotaxis and the associated gradient descent search. (shrink)

Demonstration of illusiveness of basic beliefs of the Modern Synthesis implies the existence of evolutionary mechanisms that do not require natural selection for the origin of adaptations. This requires adaptive changes that occur independently from replication, but can occasionally become heritable. Plastic self-organizational changes regulated by genome are largely incorporable into the old theory. A fundamentally different source of adaptability is semiosis which includes the agent’s free choice. Adding semiosis into the theory of Extended Evolutionary Synthesis completes the distancing from (...) the Modern Synthesis. I focus here on the importance of semiosis as the necessary factor in organisms’ meaning making. (shrink)

In this commentary I expand on the first of Noble’s illusions, the selection metaphor. Building on my work with Simona Ginsburg on the evolution of minimal consciousness, I argue that the existence of some complex sensory and motor patterns in the living world can be accounted for only through the evolution of conscious choice.

The scientific study of consciousness or subjective experiencing is a rapidly expanding research program engaging philosophers of mind, psychologists, cognitive scientists, neurobiologists, evolutionary biologists and biosemioticians. Here we outline an evolutionary approach that we have developed over the last two decades, focusing on the evolutionary transition from non-conscious to minimally conscious, subjectively experiencing organisms. We propose that the evolution of subjective experiencing was driven by the evolution of learning and we identify an open-ended, representational, generative and recursive form of associative (...) learning, which we call Unlimited Associative Learning (UAL), as an evolutionary transition marker of minimal consciousness. This evolutionary marker provides evidence that the evolutionary transition to consciousness has gone to completion and allows reverse-engineering from this learning capacity to the system that enables it – making possible the construction of a toy model of UAL. The model allows us to identify some of the key processes and structures that constitute minimal consciousness, points its taxonomic distribution and the ecological context in which it first emerged, highlights its function and suggests a framework for exploring developmental and evolutionary modifications of consciousness. We point to ways of experimentally testing the relationship between UAL and consciousness in human and in non-human animals and discuss the theoretical and ethical implications of our approach. The framework we offer allows the exploration of the evolutionary changes in agency, value systems, selective processes and goals that were involved in the transition to subjective experiencing from a perspective that resonates with the approaches of bio-semioticians. (shrink)

The theoretical biologist Waddington drew attention to the damage to scientific progress by COWDUNG – the Conventional Wisdom of the Dominant Group. Despite Popper’s attack on what he called “the bucket theory of science”, that scientific knowledge accumulates incrementally, adding one fact after another, this is now conventional wisdom among biologists. Denis Noble is challenging not only the Neo-Darwinist orthodoxy dominating biology, but revealing the distortions of science produced by this bucket theory of science. The latter is central to understanding (...) the importance of his argument and for seeing the relevance of his work for biosemiotics. (shrink)

In this paper, I will conduct three interrelated analyses. First, I will develop an analysis of various concepts in the history of biology that used to refer to individual-level phenomena but were then reinterpreted by the Modern Synthesis in terms of populations. Second, I argue that a similar situation can be found in contemporary biological theory. While different approaches reflect on the causal role of developing organisms in evolution, proponents of the Modern Synthesis avoid any substantial change by reinterpreting and (...) explaining individual-level phenomena from a population perspective. Finally, I will approach this debate by advocating the statistical reading of natural selection, which holds that explanations by natural selection are statistical. I will argue that the above historical conceptual reinterpretations belong to a new explanatory strategy developed by the Modern Synthesis based on population thinking. The reinterpretation of concepts at the individual level is part of the explanatory framework of the Modern Synthesis and the empty role of development within this framework. Moreover, the statistical perspective adopted here allows for the integration of two explanatory models: population-statistical and individual-causal. Finally, I will argue that this pluralistic framework can help to define the explanatory scope of the different biological approaches in order to achieve a coherent integration of development into evolution without rejecting population thinking. (shrink)

It should now be recognized that codes are central to life and to understanding its more complex forms, including human culture. Recognizing the ‘conventional’ nature of codes provides solid grounds for rejecting efforts to reduce life to biochemistry and justifies according a place to semantics in life. The question I want to consider is whether this is enough. Focussing on Eigen’s paradox of how a complex code could originate, I will argue that along with Barbieri’s efforts to account for the (...) origins of life based on the ribosome and then to account for the refined codes through a process of ambiguity reduction, something more is required. Barbieri has not provided an adequate account of emergence, or the basis for providing such an account. I will argue that Stanley Salthe has clarified to some extent the nature of emergence by conceptualizing it as the interpolation of new enabling constraints. Clearly, codes can be seen as enabling constraints. How this actually happens, though, is still not explained. Stuart Kauffman has grappled with this issue and shown that it radically challenges the assumptions of mainstream science going back to Newton. He has attempted to reintroduce real possibilities or potentialities into his ontology, and argued that radically new developments in nature are associated with realizing adjacent possibles. This is still not adequate. What is also involved, I will suggest, utilizing concepts developed by the French natural philosopher Gilbert Simondon, is ‘transduction’ as part of ‘ontogenesis’ of individuals in a process of ‘individuation’, that is, the emergence of ‘individuals’ from preindividual fields or milieux. (shrink)