Results for 'chemotaxis'

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  1.  41
    Signal transduction in bacterial chemotaxis.Melinda D. Baker, Peter M. Wolanin & Jeffry B. Stock - 2006 - Bioessays 28 (1):9-22.
    Motile bacteria respond to environmental cues to move to more favorable locations. The components of the chemotaxis signal transduction systems that mediate these responses are highly conserved among prokaryotes including both eubacterial and archael species. The best‐studied system is that found in Escherichia coli. Attractant and repellant chemicals are sensed through their interactions with transmembrane chemoreceptor proteins that are localized in multimeric assemblies at one or both cell poles together with a histidine protein kinase, CheA, an SH3‐like adaptor protein, (...)
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  2.  8
    Molecular neurogenetics of chemotaxis and thermotaxis in the nematode Caenorhabditis elegans.Ikue Mori & Yasumi Ohshima - 1997 - Bioessays 19 (12):1055-1064.
    Chemotaxis and thermotaxis in Caenorhabditis elegans are based on the chemical senses (smell and taste) and the thermal sense, respectively, which are important for the life of the animal. Laser ablation experiments have allowed identification of sensory neurons and some interneurons required for these senses. Many mutants that exhibit various abnormalies have been isolated and analyzed. These studies have predicted novel signaling pathways whose components include a putative odorant specific transmembrane receptor (ODR‐10) and a cyclic nucleotide‐gated channel (TAX‐4/TAX‐2) functioning (...)
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  3.  31
    The molecular genetics of chemotaxis: sensing and responding to chemoattractant gradients.Richard A. Firtel & Chang Y. Chung - 2000 - Bioessays 22 (7):603-615.
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  4.  15
    Swimming against the tide: Chemotaxis in Agrobacterium.Charles H. Shaw - 1991 - Bioessays 13 (1):25-29.
    Chemotaxis in bacteria is an excellent model for signal transduction processes. In Agrobacterium tumefaciens, the causative agent of crown gall tumour on wounded plants, it is a vital part of the organism's biology. A chromosomally‐determined chemotaxis system causes the bacterium to be attracted into the rhizosphere by chemoattractants in plant exudates. By interfacing with this system, the multifunctional products of two Tiplasmid encoded genes, virA and virG, allow the sensing of specific wound phenolics such as acetosyringone. This attracts (...)
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  5.  15
    Streamer F mutants and chemotaxis of Dictyostelium.Peter C. Newell & Gang Liu - 1992 - Bioessays 14 (7):473-479.
    Streamer F mutants have been found to be useful tools for studying the pathway of signal transduction leading to chemotactic cell movement. The primary defect in these mutants is in the structural gene for the cyclic GMP specific phosphodiesterase. This defect allows a larger and prolonged peak of cyclic GMP to be formed in response to the chemotactic stimulus, cyclic AMP. This characteristic aberrant pattern of cyclic GMP accumulation in the streamer F mutants has been correlated with similar patterns of (...)
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  6.  13
    The Semiotic Approach to Bacterial Chemotaxis.Adam Kłóś & Przemysław Mieszko Płonka - 2021 - Biosemiotics 14 (3):743-766.
    Bacterial chemotaxis is often considered to be a textbook example of the rudimentary semiotic process. As such, it gives an excellent opportunity to better understand both semiosis and biology. Our study reviews this phenomenon in the light of up-to-date scientific knowledge to answer the most basic semiotic questions: what is the sign? What types of signs are there? What is the meaning understood on the molecular level, and by what means can it grow with time? As a case study, (...)
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  7.  97
    Larval Subjects, Autonomous Systems, and E. Coli Chemotaxis.John Protevi - unknown
    Upon first reading, the beginning of Chapter 2 of Difference and Repetition, with its talk of ―contemplative souls‖ and ―larval subjects,‖ seems something of a bizarre biological panpsychism. Actually it does defend a sort of biological panpsychism, but by defining the kind of psyche Deleuze is talking about, I‘ll show here how we can remove the bizarreness from that concept. First, I will sketch Deleuze‘s treatment of ―larval subjects,‖ then show how Deleuze‘s discourse can be articulated with Evan Thompson‘s biologically (...)
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  8.  23
    A 3D Individual-Based Model to Study Effects of Chemotaxis, Competition and Diffusion on the Motile-Phytoplankton Aggregation.Ilhem Bouderbala, Nadjia El Saadi, Alassane Bah & Pierre Auger - 2018 - Acta Biotheoretica 66 (4):257-278.
    In this paper, we develop a 3D-individual-based model to understand effect of various small-scale mechanisms in phytoplankton cells, on the cellular aggregation process. These mechanisms are: spatial interactions between cells due to their chemosensory abilities, a molecular diffusion and a demographical process. The latter is considered as a branching process with a density-dependent death rate to take into account the local competition on resources. We implement the IBM and simulate various scenarios under real parameter values for phytoplankton cells. To quantify (...)
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  9.  7
    Controlling the molecular motor of neutrophil chemotaxis.M. B. Hallett - 1997 - Bioessays 19 (7):615-621.
    Our defence against microbes depends largely on the ability of neutrophils to migrate from the blood stream to sites of infection. Although the ability of animal cells to move may be primitive, and also fundamental for a number of phenomena in biology, the cellular mechanism by which neutrophils are able to move rapidly towards the infection remains an enigma. Even though the structures of the receptors involved have been sequenced and many of the molecules involved in neutrophil adherence and traction (...)
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  10.  21
    The role of actin polymerization in Amoebal Chemotaxis.Peter C. Newell - 1986 - Bioessays 5 (5):208-211.
    A very rapid cellular event that follows chemotactic stimulation of leucocyte and cellular slime mould amoebae is a massive polymerization of G to F actin and its association with the cytoskeleton. In the cellular slime moulds this event occurs within 3–5 sec of cell surface binding of chemoattractants. It is correlated with rapid pseudopodium extension and may be a cell orientation mechanism. Curiously, before an amoebae moves away in the direction of its new pseudopodium it rounds up or “cringes” for (...)
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  11.  5
    Chapter 2 Larval Subjects, Autonomous Systems and E. Coli Chemotaxis.John Protevi - 2011 - In Laura Guillaume & Joe Hughes (eds.), Deleuze and the Body. Edinburgh University Press. pp. 29-52.
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  12. Biological regulation: controlling the system from within.Leonardo Bich, Matteo Mossio, Kepa Ruiz-Mirazo & Alvaro Moreno - 2016 - Biology and Philosophy 31 (2):237-265.
    Biological regulation is what allows an organism to handle the effects of a perturbation, modulating its own constitutive dynamics in response to particular changes in internal and external conditions. With the central focus of analysis on the case of minimal living systems, we argue that regulation consists in a specific form of second-order control, exerted over the core regime of production and maintenance of the components that actually put together the organism. The main argument is that regulation requires a distinctive (...)
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  13. A model for glioma growth.Evgeniy Khain, Leonard M. Sander & Andrew M. Stein - 2005 - Complexity 11 (2):53-57.
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  14. Strategies of Explanatory Abstraction in Molecular Systems Biology.Nicholaos Jones - 2018 - Philosophy of Science 85 (5):955-968.
    I consider three explanatory strategies from recent systems biology that are driven by mathematics as much as mechanistic detail. Analysis of differential equations drives the first strategy; topological analysis of network motifs drives the second; mathematical theorems from control engineering drive the third. I also distinguish three abstraction types: aggregations, which simplify by condensing information; generalizations, which simplify by generalizing information; and structurations, which simplify by contextualizing information. Using a common explanandum as reference point—namely, the robust perfect adaptation of (...) in Escherichia coli—I argue that each strategy invokes a different combination of abstraction types and that each targets its abstractions to different mechanistic details. (shrink)
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  15.  46
    Model Organisms and Mathematical and Synthetic Models to Explore Gene Regulation Mechanisms.Andrea Loettgers - 2007 - Biological Theory 2 (2):134-142.
    Gene regulatory networks are intensively studied in biology. One of the main aims of these studies is to gain an understanding of how the structure of genetic networks relates to specific functions such as chemotaxis and the circadian clock. Scientists have examined this question by using model organisms such as Drosophila and mathematical models. In the last years, synthetic models—engineered genetic networks—have become more and more important in the exploration of gene regulation. What is the potential of this new (...)
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  16. The Deliberation Model of Organismic Agency.Hugh Desmond - manuscript
    Organismic agency is often understood as the capacity to produce goal-directed behavior. This paper proposes a new way of modelling agency, namely as a naturalized deliberation. Deliberative action is not directed towards a particular goal, but involves a process of weighing multiple goals and a choice for a particular combination of these. The underlying causal model is symmetry breaking, where the organism breaks symmetries present in the selective environment. Deliberation is illustrated though the phenomena of mate choice and bacterial (...). (shrink)
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  17.  12
    Synthetic Neuroethology.Pete Mandik - 2002 - Metaphilosophy 33 (1‐2):11-29.
    Computation and philosophy intersect three times in this essay. Computation is considered as an object, as a method, and as a model used in a certain line of philosophical inquiry concerning the relation of mind to matter. As object, the question considered is whether computation and related notions of mental representation constitute the best ways to conceive of how physical systems give rise to mental properties. As method and model, the computational techniques of artificial life and embodied evolutionary connectionism are (...)
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  18.  63
    Synthetic neuroethology.Pete Mandik - 2002 - In James Moor & Terrell Ward Bynum (eds.), Cyberphilosophy: the intersection of philosophy and computing. Malden, MA: Blackwell. pp. 11-29.
    Computation and philosophy intersect three times in this essay. Computation is considered as an object, as a method, and as a model used in a certain line of philosophical inquiry concerning the relation of mind to matter. As object, the question considered is whether computation and related notions of mental representation constitute the best ways to conceive of how physical systems give rise to mental properties. As method and model, the computational techniques of artificial life and embodied evolutionary connectionism are (...)
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  19.  13
    Chemokines: extracellular messengers for all occasions?Lisa M. Gale & Shaun R. McColl - 1999 - Bioessays 21 (1):17-28.
    Movement of leukocytes from peripheral blood into tissues, also called leukocyte extravasation, is absolutely essential for immunity in higher organisms. Over the past decade, our understanding of the molecular mechanisms involved in white blood cell extravasation during both normal immune surveillance and the generation of protective immune responses has taken a great leap forward with the discovery of the chemokine gene superfamily. Chemokines are low-molecular-weight cytokines whose major collective biological activity appears to be that of chemotaxis of both specific (...)
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  20. Size doesn’t matter: towards a more inclusive philosophy of biology. [REVIEW]Maureen A. O’Malley & John Dupré - 2007 - Biology and Philosophy 22 (2):155-191.
    Philosophers of biology, along with everyone else, generally perceive life to fall into two broad categories, the microbes and macrobes, and then pay most of their attention to the latter. ‘Macrobe’ is the word we propose for larger life forms, and we use it as part of an argument for microbial equality. We suggest that taking more notice of microbes – the dominant life form on the planet, both now and throughout evolutionary history – will transform some of the philosophy (...)
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  21. Grounding cognition: heterarchical control mechanisms in biology.William Bechtel & Leonardo Bich - 2021 - Philosophical Transactions of the Royal Society B: Biological Sciences 376 (1820).
    We advance an account that grounds cognition, specifically decision-making, in an activity all organisms as autonomous systems must perform to keep themselves viable—controlling their production mechanisms. Production mechanisms, as we characterize them, perform activities such as procuring resources from their environment, putting these resources to use to construct and repair the organism's body and moving through the environment. Given the variable nature of the environment and the continual degradation of the organism, these production mechanisms must be regulated by control mechanisms (...)
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  22.  14
    A Functional - Helix Conceptualization of the Emergent Properties of the Animal Kingdom: Chronoception as a Key Sensory Process.Amelia Lewis - 2023 - Biosemiotics 16 (1):125-142.
    Teleological theories are often dismissed in the study of animal behaviour, because of both the anthropomorphic element, and the paradox of retro-causation. Instead, emergent properties of animal systems, such as those which drive behaviour and decision making, are generally deemed to be non-purposeful. Nonetheless, organisms’ interactions with the environment, including sensory processing, have long been subject to biological study, and the resulting models include Jakob von Uexküll’s functional circle (part of his ‘Umwelt Theory’). The functional circle is modelled on an (...)
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  23.  22
    Chemosensory behaviour of Tetrahymena.Vegn Leick And & Per Hellung-Larsen - 1992 - Bioessays 14 (1):61-66.
    Free swimming cells of the ciliated protozoan Tetrahymena are attracted to certain chemicals by chemokinesis. However, a special type of chemotaxis in response to a chemical gradient is found in cells gliding very slowly in semisolid media. In contrast to classical chemotaxis by leukocytes, which is solely positive towards chemo‐attractants, the oriented chemokinesis by gliding Tetrahymena involves both positive and negative elements. The major chemo‐attractants are peptides and/or proteins, and they may be compounds which signal the presence of (...)
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  24.  33
    Atherosclerosis and glycation.Camilo A. L. S. Colaco & Bruce J. Roser - 1994 - Bioessays 16 (2):145-147.
    Atherosclerosis is the major cause of death in the industrialised world. Though much work on the pathogenesis of atherosclerosis points to 'oxidised' low density lipoprotein (LDL) as a key aetiological feature in the generation of the atherosclerotic plaque, the nature of this 'oxidised' LDL in vivo remains an enigma. We argue here that glycated LDL shows many of the characteristics attributed to 'oxidised LDL' and may be the source of the latter in vivo. These include the increased uptake and impaired (...)
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  25.  15
    Cells and cell‐interactions that guide motor axons in the developing chick embryo.Karthryn W. Tonsey - 1991 - Bioessays 13 (1):17-23.
    A considerable challenge confronts, any developing neuron. Before it can establish a functional and specific connection, it must extend an axon over tens and sometimes hundreds of microns through a complex and mutable environment to reach one out of many possible destinations. The field of axonal guidance concerns the control of this navigation process. To satisfactorily identify the cell interactions and molecular mechanisms that mediate axonal guidance, it is essential to first identify the pertinent cell populations. Embryonic surgeries have provided (...)
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  26.  5
    G proteins, chemosensory perception, and the C. elegans genome project: An attractive story.H. Georg Kuhn & Clive N. Svendsen - 1999 - Bioessays 21 (9):713-717.
    Heterotrimeric G proteins, consisting of α, β, and γ subunits, couple ligand-bound seven transmembrane domain receptors to the regulation of effector proteins and production of intracellular second messengers. G protein signaling mediates the perception of environmental cues in all higher eukaryotic organisms, including yeast, Dictyostelium, plants, and animals. The nematode Caenorhabditis elegans is the first animal to have complete descriptions of its cellular anatomy, cell lineage, neuronal wiring diagram, and genomic sequence. In a recent paper, Jansen et al.(1) used sequence (...)
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  27.  14
    The role of interferon in the regulation of virus infections by cytotoxic lymphocytes.Raymond M. Welsh, Hyekyung Yang & Jack F. Bukowski - 1988 - Bioessays 8 (1):10-13.
    Interferon (IFN) induced during a virus infection mediates antiviral effects both by direct inhibition of virus replication and by influencing the proliferation, differentiation, and chemotaxis of cyto‐toxic lymphocytes which control the infection. Cells from tissue taken from virus‐infected mice are conditioned by IFN to resist lysis by natural killer (NK) cells, while they become increasingly susceptible to lysis by cytotoxic Tlymphocytes (CTL). This is due to marked IFN‐induced biochemical changes, including an up‐regulation of major histocompatibility antigens, which are targets (...)
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  28.  13
    G proteins, chemosensory perception, and the C. elegans genome project: An attractive story.Thomas M. Wilkie - 1999 - Bioessays 21 (9):713-717.
    Heterotrimeric G proteins, consisting of α, β, and γ subunits, couple ligand-bound seven transmembrane domain receptors to the regulation of effector proteins and production of intracellular second messengers. G protein signaling mediates the perception of environmental cues in all higher eukaryotic organisms, including yeast, Dictyostelium, plants, and animals. The nematode Caenorhabditis elegans is the first animal to have complete descriptions of its cellular anatomy, cell lineage, neuronal wiring diagram, and genomic sequence. In a recent paper, Jansen et al.(1) used sequence (...)
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  29.  6
    The role of chemoattraction in cancer metastases.Malcolm A. S. Moore - 2001 - Bioessays 23 (8):674-676.
    It has long been unclear as to why particular cancers preferentially metastasize to certain sites. The possibilities usually discussed involve differential survival and proliferation at these sites, or selective trapping with or without preferential homing. A recent report by Muller et al.(1) provides evidence for preferential homing of breast cancer to metastatic sites. The findings indicate that the chemokine receptors CXCR4 and CCR7 are found on breast cancer cells and their ligands are highly expressed at sites associated with breast cancer (...)
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  30.  15
    Leukocytes on the move with phosphoinositide 3-kinase and its downstream effectors.Erik Procko & Shaun R. McColl - 2005 - Bioessays 27 (2):153-163.
    Cell signalling mediators derived from membrane phospholipids are frequent participants in biological processes. The family of phosphoinositide 3-kinases (PI3Ks) phosphorylate the membrane lipid phosphatidylinositol, generating second messengers that direct diverse responses. These PI3K products are fundamental for leukocyte migration or chemotaxis, a pivotal event during the immune response. This system is therefore of significant biomedical interest. This review focuses on the biochemistry and signalling pathways of PI3K, with particular emphasis on chemokine (chemotactic cytokine)-directed responses. The key objectives of (...) are motility and direction. The latter—direction—requires distinct events at the front and back of a cell. In light of this, the coordinated localisation of signalling factors, an event choreographed by a sharp intracellular gradient of PI3K-derived products, is a common theme. BioEssays 27:153–163, 2005. © 2005 Wiley Periodicals, Inc. (shrink)
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  31.  12
    Wissen auf losen Blättern im Kontext starrer TheorienKnowledge on Loose Sheets in the Context of fixed Theories. Theodor Leber’s Research of Inflammation.Dorina Stahl - 2016 - NTM Zeitschrift für Geschichte der Wissenschaften, Technik und Medizin 24 (3):279-308.
    ZusammenfassungNach zwölf Jahren intensiver Forschung etablierte der Ophthalmologe Theodor Leber (1840–1917) am Ende des 19. Jahrhunderts in der Entzündungsforschung die Chemotaxis der Leukozyten. Obwohl sich seine Theorie damals reibungslos in die immunologische Forschung einschrieb, wird sein Name jedoch bis heute nur in der englischsprachigen Fachliteratur mit der Chemotaxis verknüpft. In seinem Experimentalsystem hatte Leber zwar schon Anfang der 1880er Jahre eine Theorie der chemischen Attraktion der Leukozyten beim Entzündungsprozess entwickeln können. Aber seine unkonventionelle Methodik—die Einführung von chemisch indifferentem (...)
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  32.  2
    Wissen auf losen Blättern im Kontext starrer Theorien: Theodor Lebers Entzündungsforschung.Dorina Stahl - 2016 - NTM Zeitschrift für Geschichte der Wissenschaften, Technik und Medizin 24 (3):279-308.
    ZusammenfassungNach zwölf Jahren intensiver Forschung etablierte der Ophthalmologe Theodor Leber (1840–1917) am Ende des 19. Jahrhunderts in der Entzündungsforschung die Chemotaxis der Leukozyten. Obwohl sich seine Theorie damals reibungslos in die immunologische Forschung einschrieb, wird sein Name jedoch bis heute nur in der englischsprachigen Fachliteratur mit der Chemotaxis verknüpft. In seinem Experimentalsystem hatte Leber zwar schon Anfang der 1880er Jahre eine Theorie der chemischen Attraktion der Leukozyten beim Entzündungsprozess entwickeln können. Aber seine unkonventionelle Methodik—die Einführung von chemisch indifferentem (...)
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