The brain displays both the anatomical features of a vast amount of interconnected topological mappings as well as the functional features of a nonlinear, metastable system at the edge of chaos, equipped with a phase space where mental random walks tend towards lower energetic basins. Nevertheless, with the exception of some advanced neuro-anatomic descriptions and present-day connectomic research, very few studies have been addressing the topological path of a brain embedded or embodied in its external and internal environment. Herein, by (...) using new formal tools derived from algebraic topology, we provide an account of the metastable brain, based on the neuro-scientific model of Operational Architectonics of brain-mind functioning. We introduce a “topodynamic” description that shows how the relationships among the countless intertwined spatio-temporal levels of brain functioning can be assessed in terms of projections and mappings that take place on abstract structures, equipped with different dimensions, curvatures and energetic constraints. Such a topodynamical approach, apart from providing a biologically plausible model of brain function that can be operationalized, is also able to tackle the issue of a long-standing dichotomy: it throws indeed a bridge between the subjective, immediate datum of the naïve complex of sensations and mentations and the objective, quantitative, data extracted from experimental neuro-scientific procedures. Importantly, it opens the door to a series of new predictions and future directions of advancement for neuroscientific research. (shrink)

Physical and biological measurements might display range values extending towards infinite. The occurrence of infinity in equations, such as the black hole singularities, is a troublesome issue that causes many theories to break down when assessing extreme events. Different methods, such as re-normalization, have been proposed to avoid detrimental infinity. Here a novel technique is proposed, based on geometrical considerations and the Alexander Horned sphere, that permits to undermine infinity in physical and biophysical equations. In this unconventional approach, a continuous (...) monodimensional line becomes an assembly of countless bidimensional lines that superimpose in quantifiable knots and bifurcations. In other words, we may state that Achilles leaves the straight line and overtakes the turtle. (shrink)

The discrepancy between syntax and semantics is a painstaking issue that hinders a better comprehension of the underlying neuronal processes in the human brain. In order to tackle the issue, we at first describe a striking correlation between Wittgenstein's Tractatus, that assesses the syntactic relationships between language and world, and Perlovsky's joint language-cognitive computational model, that assesses the semantic relationships between emotions and “knowledge instinct”. Once established a correlation between a purely logical approach to the language and computable psychological activities, (...) we aim to find the neural correlates of syntax and semantics in the human brain. Starting from topological arguments, we suggest that the semantic properties of a proposition are processed in higher brain's functional dimensions than the syntactic ones. In a fully reversible process, the syntactic elements embedded in Broca's area project into multiple scattered semantic cortical zones. The presence of higher functional dimensions gives rise to the increase in informational content that takes place in semantic expressions. Therefore, diverse features of human language and cognitive world can be assessed in terms of both the logic armor described by the Tractatus, and the neurocomputational techniques at hand. One of our motivations is to build a neuro-computational framework able to provide a feasible explanation for brain's semantic processing, in preparation for novel computers with nodes built into higher dimensions. (shrink)

Neuroscientists are able to detect physical changes in information entropy in the available neurodata. However, the information paradigm is inadequate to describe fully nervous dynamics and mental activities such as perception. This paper suggests explanations to neural dynamics that provide an alternative to thermodynamic and information accounts. We recall the Banach–Tarski paradox, which informally states that when pieces of a ball are moved and rotated without changing their shape, a synergy between two balls of the same volume is achieved instead (...) of the original one. We show how and why BTP might display this physical and biological synergy meaningfully, making it possible to model nervous activities. The anatomical and functional structure of the central nervous system’s nodes and edges makes it possible to perform a sequence of moves inside the connectome that doubles the amount of available cortical oscillations. In particular, a BTP-based mechanism permits scale-invariant nervous oscillations to amplify and propagate towards widely separated brain areas. Paraphrasing the BTP’s definition, we could state that: when a few components of a self-similar nervous oscillation are moved and rotated throughout the cortical connectome, two self-similar oscillations are achieved instead of the original one. Furthermore, based on topological structures, we illustrate how, counterintuitively, the amplification of scale-free oscillations does not require information transfer. (shrink)

Dogs display vast phenotypic diversity, including differences in height, skull shape, tail, etc. Yet, humans are almost always able to quickly recognize a dog, despite no single feature or group of features are critical to distinguish dogs from other objects/animals. In search of the mental activities leading human individuals to state “I see a dog”, we hypothesize that the brain might extract meaningful information from the environment using Ramsey sentences-like procedures. To turn the proposition “I see a dog” in a (...) Ramsey sentence, the term dog must be replaced by a long and complex assertion consisting only of observational terms, existential quantifiers and operational rules. The Ramsey sentence for “I see a dog” sounds: “There is at least an entity called dog which satisfies the following conditions: it is an animal, it has four legs, …, etc, …, and is something that I have in my sight”. We discuss the biological plausibility and the putative neural correlates of a Ramsey-like mechanism in the central nervous system. We accomplish a brain-inspired, theoretical neural architecture consisting of a parallel network that requires virtually no memory, is devoid of probabilistic choices and can analyze huge but finite amounts of unique visual details, combining them into a single conceptual output. In sum, Ramsey sentence stands for a versatile tool that can be used not just as a methodological device to cope with biophysical affairs, but also for a model to describe the real functioning of cognitive operations such as sensation and perception. (shrink)

The central dogma of molecular biology dictates that, with only a few exceptions, information proceeds from DNA to protein through an RNA intermediate. Examining the enigmatic steps from prebiotic to biological chemistry, we take another road suggesting that primordial peptides acted as template for the self-assembly of the first nucleic acids polymers. Arguing in favour of a sort of archaic “reverse translation” from proteins to RNA, our basic premise is a Hadean Earth where key biomolecules such as amino acids, polypeptides, (...) purines, pyrimidines, nucleosides and nucleotides were available under different prebiotically plausible conditions, including meteorites delivery, shallow ponds and hydrothermal vents scenarios. Supporting a protein-first scenario alternative to the RNA world hypothesis, we propose the primeval occurrence of short two-dimensional peptides termed “selective amino acid- and nucleotide-matching oligopeptides” (henceforward SANMAOs) that noncovalently bind at the same time the polymerized amino acids and the single nucleotides dispersed in the prebiotic milieu. In this theoretical paper, we describe the chemical features of this hypothetical oligopeptide, its biological plausibility and its virtues from an evolutionary perspective. We provide a theoretical example of SANMAO’s selective pairing between amino acids and nucleosides, simulating a poly-Glycine peptide that acts as a template to build a purinic chain corresponding to the glycine’s extant triplet codon GGG. Further, we discuss how SANMAO might have endorsed the formation of low-fidelity RNA’s polymerized strains, well before the appearance of the accurate genetic material’s transmission ensured by the current translation apparatus. (shrink)

When a boat disappears over the horizon, does a distant observer detect the last moment in which the boat is visible, or the first moment in which the boat is not visible? This apparently ludicrous way of reasoning, heritage of long-lasting medieval debates on decision limit problems, paves the way to sophisticated contemporary debates concerning the methodological core of mathematics, physics and biology. These ancient, logically-framed conundrums throw us into the realm of bounded objects with fuzzy edges, where our mind (...) fails to provide responses to plain questions such as: given a closed curve with a boundary how do you recognize what is internal and what is external? We show how the choice of an alternative instead of another is not arbitrary, rather points towards entirely different ontological, philosophical and physical commitments. This paves the way to novel interpretations and operational approaches to challenging issues such as black hole singularities, continuous time in quantum dynamics, chaotic nonlinear paths, logarithmic plots, demarcation of living beings. In the sceptical reign where judgements seem to be suspended forever, the contemporary scientist stands for a sort of God equipped with infinite power who is utterly free to dictate the rules of the experimental settings. (shrink)

The brain, rather than being homogeneous, displays an almost infinite topological genus, since it is punctured with a high number of “cavities”. We might think to the brain as a sponge equipped with countless, uniformly placed, holes. Here we show how these holes, termed topological vortexes, stand for nesting, non-concentric brain signal cycles resulting from the activity of inhibitory neurons. Such inhibitory spike activity is inversely correlated with its counterpart, i.e., the excitatory spike activity propagating throughout the whole brain tissue. (...) We illustrate how Pascal’s triangles and linear and nonlinear arithmetic octahedrons are capable of describing the three-dimensional random walks generated by the inhbitory/excitatory activity of the nervous tissue. In case of nonlinear 3D paths, the trajectories of excitatory spiking oscillations can be depicted as the operation of filling the numbers of octahedrons in the form of “islands of numbers”: this leads to excitatory neuronal assemblies, spaced out by empty areas of inhibitory neuronal assemblies. These mathematical procedures allow us to describe the topology of a brain of infinite genus, to represent inhibitory neurons in terms of Betti numbers and to highlight how spike diffusion in neural tissues is generated by the random activation of tiny groups of excitatory neurons. Our approach suggests the existence of a strong mathematical background subtending the intricate oscillatory activity of the central nervous system. (shrink)

First of all, we would like to gratefully thank all commentators for the attention and effort they have put into reading and responding to our review paper [this issue] and for useful observations that suggest novel applications for our framework. We understand and accept that some of our claims might appear controversial and raise skepticism, because the overall neural framework we have proposed is difficult to frame in established categories, given its strong multidisciplinary character. To make an example, Elsevier is (...) publishing the British Neuroscience Association (BNA) 2017 Special Issue Collection. However, our paper could not fully fit in any of their Special Issues—attention, motivation, behavior; sensory and motor systems; novel treatments and translational neuroscience; genetics and epigenetics; learning and memory; neurodegenerative disorders and ageing; developmental neuroscience; neuronal, glial and cellular mechanisms; neuroendocrine and autonomic nervous systems; psychiatry and mental health; methods and techniques. Perhaps because our paper was mathematically, physically, biologically (neuroscientifically), and phenomenologically motivated from the start? Nevertheless, venturing in novel, fresh, testable proposals is badly needed in contemporary neuroscience, so to break into “the utter darkness of the inner mechanism of psychic acts… during the production of the concomitant phenomena of perception and thought, namely, feelings, consciousness and volition”—as Cajal had already observed in his opus magnus ‘Textura’. But as he soberly confessed: “This ideal is still very distant” (Ramon y Cajal, 1899-1904, p. 1,141). In the pursuit of that very ideal, neuroscience and psychology have had, and continue to have, a plethora of movements and schools of thought: behaviorism, cognitivism, neural Darwinism, social constructivism, Bayesian optimization...In our paper, we propose to go a step further, via the notion of topodynamics, towards “projectionism.” In what follows, trying to elucidate the main features of this Emperor’s new clothing, we proceed with the responses to the comments received. (shrink)

Set theory faces two difficulties: formal definitions of sets/subsets are incapable of assessing biophysical issues; formal axiomatic systems are complete/inconsistent or incomplete/consistent. To overtake these problems reminiscent of the old-fashioned principle of individuation, we provide formal treatment/validation/operationalization of a methodological weapon termed “outer approach” (OA). The observer’s attention shifts from the system under evaluation to its surroundings, so that objects are investigated from outside. Subsets become just “holes” devoid of information inside larger sets. Sets are no longer passive containers, rather (...) active structures enabling their content’s examination. Consequences/applications of OA include: a) operationalization of paraconsistent logics, anticipated by unexpected forerunners, in terms of advanced truth theories of natural language; b) assessment of embryonic craniocaudal migration in terms of Turing’s spots; c) evaluation of hominids’ social behaviors in terms of evolutionary modifications of facial expression’s musculature; d) treatment of cortical action potentials in terms of collective movements of extracellular currents, leaving apart what happens inside the neurons; e) a critique of Shannon’s information in terms of the Arabic thinkers’ active/potential intellects. Also, OA provides an outer view of a) humanistic issues such as the enigmatic Celestino of Verona’s letter, Dante Alighieri’s “Hell” and the puzzling Voynich manuscript; b) historical issues such as Aldo Moro’s death. Summarizing, we suggest that the safest methodology to quantify phenomena is to remove them from our observation and tackle an outer view, since mathematical/logical issues such as selective information deletion and set complement rescue incompleteness/inconsistency of biophysical systems. (shrink)

One of the criteria to a strong principle in natural sciences is simplicity. The conventional view holds that the world is provided with natural laws that must be simple. This common-sense approach is a modern rewording of the medieval philosophical/theological concept of the Multiple arising from (and generated by) the One. Humans need to pursue unifying frameworks, classificatory criteria and theories of everything. Still, the fact that our cognitive abilities tend towards simplification and groupings does not necessarily entail that this (...) is the way the world works. Here we ask: what if singularity does not pave the way to multiplicity? How will we be sure if the Ockham’s razor holds in real life? We will show in the sequel that the propensity to reduce to simplicity the relationships among the events leads to misleading interpretations of scientific issues. We are not going to take a full sceptic turn: we will engage in active outreach, suggesting examples from biology and physics to demonstrate how a novel methodological antiunitary approach might help to improve our scientific attitude towards world affairs. We will provide examples from aggregation of SARS-Cov-2 particles, unclassified extinct creatures, pathological brain stiffness. Further, we will describe how antiunitary strategies, plagiarising medieval concepts from William od Ockham and Gregory of Rimini, help to explain novel relational approaches to quantum mechanics and the epistemological role of our mind in building the real world. (shrink)

Travelling waves crossing the nervous networks at mesoscopic/macroscopic scales have been correlated with different brain functions, from long-term memory to visual stimuli. Here we investigate a feasible relationship between wave generation/propagation in recurrent nervous networks and a physical/chemical model, namely the Belousov–Zhabotinsky reaction. Since BZ’s nonlinear, chaotic chemical process generates concentric/intersecting waves that closely resemble the diffusive nonlinear/chaotic oscillatory patterns crossing the nervous tissue, we aimed to investigate whether wave propagation of brain oscillations could be described in terms of BZ (...) features. We compared experimentally detected oscillations during the spontaneous activity of the brain with BZ-like concentric waves simulated by a recently introduced artificial network. The observed overlap and agreement between simulated and measured oscillatory patterns suggests that changes in cortical areas’ neural activity might be described in terms of a recognizable diffusion pattern. We describe biological plausibility, benefits and limits of our approach and discuss the relationship among BZ-like networks, Pandemonium-like architectures and the spontaneous activity of the brain. ER -. (shrink)