Results for 'Nicolas Glade'

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  1.  32
    Numerical simulations of microtubule self-organisation by reaction and diffusion.Nicolas Glade, Jacques Demongeot & James Tabony - 2002 - Acta Biotheoretica 50 (4):239-268.
    This article addresses the physical chemical processes underlying biological self-organisation by which a homogenous solution of reacting chemicals spontaneously self-organises. Theoreticians have predicted that self-organisation can arise from a coupling of reactive processes with molecular diffusion. In addition, the presence of an external field, such as gravity, at a critical moment early in the process may determine the morphology that subsequently develops. The formation, in-vitro, of microtubules, a constituent of the cellular skeleton, shows this type of behaviour. The preparations spontaneously (...)
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  2.  58
    On the Nature and Shape of Tubulin Trails: Implications on Microtubule Self-Organization.Nicolas Glade - 2012 - Acta Biotheoretica 60 (1-2):55-82.
    Microtubules, major elements of the cell skeleton are, most of the time, well organized in vivo, but they can also show self-organizing behaviors in time and/or space in purified solutions in vitro. Theoretical studies and models based on the concepts of collective dynamics in complex systems, reaction–diffusion processes and emergent phenomena were proposed to explain some of these behaviors. In the particular case of microtubule spatial self-organization, it has been advanced that microtubules could behave like ants, self-organizing by ‘talking to (...)
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  3.  37
    SMT or TOFT? How the Two Main Theories of Carcinogenesis are Made Incompatible.Angélique Stéphanou & Nicolas Glade - 2015 - Acta Biotheoretica 63 (3):257-267.
    The building of a global model of carcinogenesis is one of modern biology’s greatest challenges. The traditional somatic mutation theory is now supplemented by a new approach, called the Tissue Organization Field Theory. According to TOFT, the original source of cancer is loss of tissue organization rather than genetic mutations. In this paper, we study the argumentative strategy used by the advocates of TOFT to impose their view. In particular, we criticize their claim of incompatibility used to justify the necessity (...)
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  4.  26
    A Conceptual Model of Morphogenesis and Regeneration.Angélique Stéphanou & Nicolas Glade - 2015 - Acta Biotheoretica 63 (3):283-294.
    This paper is devoted to computer modelling of the development and regeneration of multicellular biological structures. Some species are able to regenerate parts of their body after amputation damage, but the global rules governing cooperative cell behaviour during morphogenesis are not known. Here, we consider a simplified model organism, which consists of tissues formed around special cells that can be interpreted as stem cells. We assume that stem cells communicate with each other by a set of signals, and that the (...)
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  5.  37
    Programming the Emergence in Morphogenetically Architected Complex Systems.Angélique Stéphanou & Nicolas Glade - 2015 - Acta Biotheoretica 63 (3):295-308.
    Large sets of elements interacting locally and producing specific architectures reliably form a category that transcends the usual dividing line between biological and engineered systems. We propose to call them morphogenetically architected complex systems. While taking the emergence of properties seriously, the notion of MACS enables at the same time the design of operational means that allow controlling and even, paradoxically, programming this emergence. To demonstrate our claim, we first show that among all the self-organized systems studied in the field (...)
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  6.  15
    XXXIVth Seminar of the French-Speaking Society for Theoretical Biology: Saint-Flour , France, 26–28 May, 2014.Angélique Stéphanou & Nicolas Glade - 2015 - Acta Biotheoretica 63 (3):237-238.
  7.  33
    Evolution and RNA Relics. A Systems Biology View.Jacques Demongeot, Nicolas Glade & Andrés Moreira - 2008 - Acta Biotheoretica 56 (1-2):5-25.
    The genetic code has evolved from its initial non-degenerate wobble version until reaching its present state of degeneracy. By using the stereochemical hypothesis, we revisit the problem of codon assignations to the synonymy classes of amino-acids. We obtain these classes with a simple classifier based on physico-chemical properties of nucleic bases, like hydrophobicity and molecular weight. Then we propose simple RNA ring structures that present, overlap included, one and only one codon by synonymy class as solutions of a combinatory variational (...)
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  8.  18
    Towards a Behavioral-Matching Based Compilation of Synthetic Biology Functions.Angélique Stéphanou & Nicolas Glade - 2015 - Acta Biotheoretica 63 (3):325-339.
    The field of synthetic biology is looking forward engineering framework for safely designing reliable de-novo biological functions. In this undertaking, Computer-Aided-Design environments should play a central role for facilitating the design. Although, CAD environment is widely used to engineer artificial systems the application in synthetic biology is still in its infancy. In this article we address the problem of the design of a high level language which at the core of CAD environment. More specifically the Gubs language is a specification (...)
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  9.  23
    Implementation of a Model of Bodily Fluids Regulation.Angélique Stéphanou & Nicolas Glade - 2015 - Acta Biotheoretica 63 (3):269-282.
    The classic model of blood pressure regulation by Guyton et al. set a new standard for quantitative exploration of physiological function and led to important new insights, some of which still remain the focus of debate, such as whether the kidney plays the primary role in the genesis of hypertension. Key to the success of this model was the fact that the authors made the computer code freely available and eventually provided a convivial user interface for exploration of model behavior (...)
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  10.  7
    Proceedings of the XXXIInd Seminar of the French-Speaking Society for Theoretical Biology; Saint-Flour (Cantal), France, 10–13 June, 2012. [REVIEW]Nicolas Glade & Angélique Stéphanou - 2013 - Acta Biotheoretica 61 (3):289-290.
  11.  42
    Influence of Sparkle and Saccades on Tongue Electro-Stimulation-Based Vision Substitution of 2D Vectors.Abdessalem Chekhchoukh & Nicolas Glade - 2012 - Acta Biotheoretica 60 (1-2):41-53.
    Vision substitution by electro-stimulation has been studied since the 60s beginning with P. Bach-y-Rita. Camera pictures or movies encoded in gray levels are displayed using an electro-stimulation display device on the surface of a body part, such as the skin or the tongue. Medical-technical devices have been developed on this principle to compensate for sensory-motor disabilities such as blindness or loss of balance, or to guide specific actions, such as surgery. However, the electrical signals of stationary or moving slowly moving (...)
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  12.  20
    Computing with Synthetic Protocells.Angélique Stéphanou & Nicolas Glade - 2015 - Acta Biotheoretica 63 (3):309-323.
    In this article we present a new kind of computing device that uses biochemical reactions networks as building blocks to implement logic gates. The architecture of a computing machine relies on these generic and composable building blocks, computation units, that can be used in multiple instances to perform complex boolean functions. Standard logical operations are implemented by biochemical networks, encapsulated and insulated within synthetic vesicles called protocells. These protocells are capable of exchanging energy and information with each other through transmembrane (...)
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  13.  28
    Modeling the Enzyme Kinetic Reaction.Angélique Stéphanou & Nicolas Glade - 2015 - Acta Biotheoretica 63 (3):239-256.
    The Enzymatic control reactions model was presented within the scope of fractional calculus. In order to accommodate the usual initial conditions, the fractional derivative used is in Caputo sense. The methodologies of the three analytical methods were used to derive approximate solution of the fractional nonlinear system of differential equations. Two methods use integral operator and the other one uses just an integral. Numerical results obtained exhibit biological behavior of real world problem.
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  14.  9
    Proceedings of the XXXVIIIth Seminar of the French-Speaking Society for Theoretical Biology; Saint-Flour (Cantal), France, 11–13 June, 2018. [REVIEW]Sergiu Ivanov, Ibrahim Cheddadi & Nicolas Glade - 2020 - Acta Biotheoretica 68 (1):1-3.
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  15.  50
    Formal Methods for Hopfield-Like Networks.Hedi Ben Amor, Fabien Corblin, Eric Fanchon, Adrien Elena, Laurent Trilling, Jacques Demongeot & Nicolas Glade - 2013 - Acta Biotheoretica 61 (1):21-39.
    Building a meaningful model of biological regulatory network is usually done by specifying the components and their interactions, by guessing the values of parameters, by comparing the predicted behaviors to the observed ones, and by modifying in a trial-error process both architecture and parameters in order to reach an optimal fitness. We propose here a different approach to construct and analyze biological models avoiding the trial-error part, where structure and dynamics are represented as formal constraints. We apply the method to (...)
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  16.  19
    On Computing Structural and Behavioral Complexities of Threshold Boolean Networks: Application to Biological Networks.Urvan Christen, Sergiu Ivanov, Rémi Segretain, Laurent Trilling & Nicolas Glade - 2019 - Acta Biotheoretica 68 (1):119-138.
    Various threshold Boolean networks, a formalism used to model different types of biological networks, can produce similar dynamics, i.e. share same behaviors. Among them, some are complex, others not. By computing both structural and behavioral complexities, we show that most TBNs are structurally complex, even those having simple behaviors. For this purpose, we developed a new method to compute the structural complexity of a TBN based on estimates of the sizes of equivalence classes of the threshold Boolean functions composing the (...)
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  17. The science of belief: A progress report.Nicolas Porot & Eric Mandelbaum - forthcoming - WIREs Cognitive Science 1.
    The empirical study of belief is emerging at a rapid clip, uniting work from all corners of cognitive science. Reliance on belief in understanding and predicting behavior is widespread. Examples can be found, inter alia, in the placebo, attribution theory, theory of mind, and comparative psychological literatures. Research on belief also provides evidence for robust generalizations, including about how we fix, store, and change our beliefs. Evidence supports the existence of a Spinozan system of belief fixation: one that is automatic (...)
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  18. Meaning in the lives of humans and other animals.Duncan Purves & Nicolas Delon - 2018 - Philosophical Studies 175 (2):317-338.
    This paper argues that contemporary philosophical literature on meaning in life has important implications for the debate about our obligations to non-human animals. If animal lives can be meaningful, then practices including factory farming and animal research might be morally worse than ethicists have thought. We argue for two theses about meaning in life: that the best account of meaningful lives must take intentional action to be necessary for meaning—an individual’s life has meaning if and only if the individual acts (...)
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  19. Indeterminism in physics and intuitionistic mathematics.Nicolas Gisin - 2021 - Synthese 199 (5-6):13345-13371.
    Most physics theories are deterministic, with the notable exception of quantum mechanics which, however, comes plagued by the so-called measurement problem. This state of affairs might well be due to the inability of standard mathematics to “speak” of indeterminism, its inability to present us a worldview in which new information is created as time passes. In such a case, scientific determinism would only be an illusion due to the timeless mathematical language scientists use. To investigate this possibility it is necessary (...)
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  20. Dialogues on metaphysics and on religion.Nicolas Malebranche - 1997 - New York: Cambridge University Press. Edited by Nicholas Jolley & David Scott.
    Malebranche's Dialogues on Metaphysics and on Religion is in many ways the best introduction to his thought, and provides the most systematic exposition of his philosophy as a whole. In it, he presents clear and comprehensive statements of his two best-known contributions to metaphysics and epistemology, namely, the doctrines of occasionalism and vision in God; he also states his views on such central issues as self-knowledge, the existence of the external world and the problem of theodicy. His skilful handling of (...)
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  21. Indeterminism in Physics, Classical Chaos and Bohmian Mechanics: Are Real Numbers Really Real?Nicolas Gisin - 2019 - Erkenntnis (6):1-13.
    It is usual to identify initial conditions of classical dynamical systems with mathematical real numbers. However, almost all real numbers contain an infinite amount of information. I argue that a finite volume of space can’t contain more than a finite amount of information, hence that the mathematical real numbers are not physically relevant. Moreover, a better terminology for the so-called real numbers is “random numbers”, as their series of bits are truly random. I propose an alternative classical mechanics, which is (...)
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  22. Real Numbers are the Hidden Variables of Classical Mechanics.Nicolas Gisin - 2020 - Quantum Studies: Mathematics and Foundations 7:197–201.
    Do scientific theories limit human knowledge? In other words, are there physical variables hidden by essence forever? We argue for negative answers and illustrate our point on chaotic classical dynamical systems. We emphasize parallels with quantum theory and conclude that the common real numbers are, de facto, the hidden variables of classical physics. Consequently, real numbers should not be considered as ``physically real" and classical mechanics, like quantum physics, is indeterministic.
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  23. Indeterminism in Physics, Classical Chaos and Bohmian Mechanics: Are Real Numbers Really Real?Nicolas Gisin - 2019 - Erkenntnis 86 (6):1469-1481.
    It is usual to identify initial conditions of classical dynamical systems with mathematical real numbers. However, almost all real numbers contain an infinite amount of information. I argue that a finite volume of space can’t contain more than a finite amount of information, hence that the mathematical real numbers are not physically relevant. Moreover, a better terminology for the so-called real numbers is “random numbers”, as their series of bits are truly random. I propose an alternative classical mechanics, which is (...)
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  24.  15
    Predictive Modeling of Individual Human Cognition: Upper Bounds and a New Perspective on Performance.Nicolas Riesterer, Daniel Brand & Marco Ragni - 2020 - Topics in Cognitive Science 12 (3):960-974.
    Syllogisms (e.g. “All A are B; All B are C; What is true about A and C?”) are a long‐studied area of human reasoning. Riesterer, Brand, and Ragni compare a variety of models to human performance and show that not only do current models have a lot of room for improvement, but more importantly a large part of this improvement must come from examining individual differences in performance.
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  25. Relational nonhuman personhood.Nicolas Delon - 2023 - Southern Journal of Philosophy 61 (4):569-587.
    This article defends a relational account of personhood. I argue that the structure of personhood consists of dyadic relations between persons who can wrong or be wronged by one another, even if some of them lack moral competence. I draw on recent work on directed duties to outline the structure of moral communities of persons. The upshot is that we can construct an inclusive theory of personhood that can accommodate nonhuman persons based on shared community membership. I argue that, once (...)
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  26. Belief: Dumb, Cold, & Cynical.Nicolas Porot & Eric Mandelbaum - forthcoming - In Eric Schwitzgebel & Jonathan Jong (eds.), What is Belief? Oxford University Press.
    We aim to do two things in this article. On the positive end, our goal is to explain how some seemingly incompatible aspects of belief live together, by presenting distinct mechanistic explanations of each of them: in particular we want to show how belief can be discerning, credulous, rational, and irrational. After clarifying our positive view, we take aim at some competitor views in the second half of the paper, particularly offering critiques of epistemic vigilance and social marketplace accounts of (...)
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  27.  18
    The mid-century biophysics bubble: Hiroshima and the biological revolution in America, revisited.Nicolas Rasmussen - 1997 - History of Science 35 (109):245-293.
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  28.  43
    Husserl and the promise of time: subjectivity in transcendental phenomenology.Nicolas de Warren - 2009 - New York: Cambridge University Press.
    This book is the first extensive treatment of Husserl's phenomenology of time-consciousness. Nicolas de Warren uses detailed analysis of texts by Husserl, some only recently published in German, to examine Husserl's treatment of time-consciousness and its significance for his conception of subjectivity. He traces the development of Husserl's thinking on the problem of time from Franz Brentano's descriptive psychology, and situates it in the framework of his transcendental project as a whole. Particular discussions include the significance of time-consciousness for (...)
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  29. Non-realism: Deep Thought or a Soft Option?Nicolas Gisin - 2012 - Foundations of Physics 42 (1):80-85.
    The claim that the observation of a violation of a Bell inequality leads to an alleged alternative between nonlocality and non-realism is annoying because of the vagueness of the second term.
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  30. The coherence theory of truth.Nicolas Rescher - 1973 - Revue Philosophique de la France Et de l'Etranger 165 (1):87-88.
     
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  31. Letting animals off the hook.Nicolas Delon - forthcoming - Journal of Ethics and Social Philosophy.
    A growing literature argues that animals can act for moral reasons without being responsible. I argue that the literature often fails to maintain a clear distinction between moral behavior and moral agency, and I formulate a dilemma: either animals are less moral or they are more responsible than the literature suggests. If animals can respond to moral reasons, they are responsible according to an influential view of moral responsibility–Quality of Will. But if they are responsible, as some argue, costly implications (...)
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  32. Rationality. A Philosophical Inquiry into the Nature and the Rationale of Reason.Nicolas Rescher - 1991 - Tijdschrift Voor Filosofie 53 (3):559-559.
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  33. Strangers to ourselves: a Nietzschean challenge to the badness of suffering.Nicolas Delon - forthcoming - Inquiry: An Interdisciplinary Journal of Philosophy.
    Is suffering really bad? The late Derek Parfit argued that we all have reasons to want to avoid future agony and that suffering is in itself bad both for the one who suffers and impersonally. Nietzsche denied that suffering was intrinsically bad and that its value could even be impersonal. This paper has two aims. It argues against what I call ‘Realism about the Value of Suffering’ by drawing from a broadly Nietzschean debunking of our evaluative attitudes, showing that a (...)
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  34.  40
    Hegel on the Normativity of Animal Life.Nicolás García Mills - 2020 - Hegel Bulletin 41 (3):446-464.
    My aim in this paper is to show that and how animal organisms are appropriate subjects of normative evaluation, on Hegel's view. I contrast my reading with the interpretive positions of Sebastian Rand and Mark Alznauer. I disagree with Rand and agree with Alznauer that animal organisms are normatively evaluable for Hegel. I substantiate my disagreement with Rand, and supplement Alznauer's interpretation, by spelling out the role that the ‘generic process’ or ‘genus process [Gattungsprozess]’ plays within Hegel's account of animal (...)
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  35.  35
    The Open Past in an Indeterministic Physics.Nicolas Gisin & Flavio Del Santo - 2022 - Foundations of Physics 53 (1):1-11.
    Discussions on indeterminism in physics focus on the possibility of an open future, i.e. the possibility of having potential alternative future events, the realisation of one of which is not fully determined by the present state of affairs. Yet, can indeterminism affect also the past, making it open as well? We show that by upholding principles of finiteness of information one can entail such a possibility. We provide a toy model that shows how the past could be fundamentally indeterminate, while (...)
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  36.  5
    Psychological Resources Protect Well-Being During the COVID-19 Pandemic: A Longitudinal Study During the French Lockdown.Nicolas Pellerin & Eric Raufaste - 2020 - Frontiers in Psychology 11.
    This longitudinal study investigated the capability of various positive psychological resources to directly or indirectly protect specific well-being outcomes and moderate the effects on well-being of health and economic threats in a lockdown situation during the 2020 health crisis in France. At the beginning of lockdown, participants completed self-assessment questionnaires to document their initial level of well-being and state of nine different well-established psychological resources, measured as traits: optimism, hope, self-efficacy, gratitude toward the world, self-transcendence, wisdom, gratitude of being, peaceful (...)
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  37.  61
    American katechon:When political theology became international relations theory.Nicolas Guilhot - 2010 - Constellations 17 (2):224-253.
  38. Animal capabilities and freedom in the city.Nicolas Delon - 2021 - Journal of Human Development and Capabilities 22 (1):131-153.
    Animals who live in cities must coexist with us. They are, as a result, entitled to the conditions of their flourishing. This article argues that, as the boundaries of cities and urban areas expand, the boundaries of our conception of captivity should expand too. Urbanization can undermine animals’ freedoms, hence their ability to live good lives. I draw the implications of an account of “pervasive captivity” against the background of the Capabilities Approach. I construe captivity, including that of urban animals, (...)
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  39.  42
    Sensory load incurs conceptual processing costs.Nicolas Vermeulen, Olivier Corneille & Paula M. Niedenthal - 2008 - Cognition 109 (2):287-294.
  40.  10
    A Study on Congruency Effects and Numerical Distance in Fraction Comparison by Expert Undergraduate Students.Nicolás Morales, Pablo Dartnell & David Maximiliano Gómez - 2020 - Frontiers in Psychology 11.
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  41.  67
    Why Physicians Ought to Lie for Their Patients.Nicolas Tavaglione & Samia A. Hurst - 2012 - American Journal of Bioethics 12 (3):4-12.
    Sometimes physicians lie to third-party payers in order to grant their patients treatment they would otherwise not receive. This strategy, commonly known as gaming the system, is generally condemned for three reasons. First, it may hurt the patient for the sake of whom gaming was intended. Second, it may hurt other patients. Third, it offends contractual and distributive justice. Hence, gaming is considered to be immoral behavior. This article is an attempt to show that, on the contrary, gaming may sometimes (...)
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  42. Beyond Value Sovereignty.Nicolas Silva - 2022 - Culturas Cientificas 3 (2):131-149.
    The following paper argues that issues in paradigmatic proposals for solving the new demarcation problem stem from absolutist assumptions about judgments of value legitimacy. Both the problem of uninformativeness (Larroulet Philippi 2020; Fernandez-Pinto 2014, 2015) and the problem of ambiguous judgments of cases (Hicks 2014; Intemann 2017) are explained by an absolutist pretension contained in one of the main aims of these proposals: providing criteria for differentiating legitimate from illegitimate uses of values, without qualification. After presenting the problems and showing (...)
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  43.  21
    Switching Between Sensory and Affective Systems Incurs Processing Costs.Nicolas Vermeulen, Paula M. Niedenthal & Olivier Luminet - 2007 - Cognitive Science 31 (1):183-192.
    Recent models of the conceptual system hold that concepts are grounded in simulations of actual experiences with instances of those concepts in sensory-motor systems (e.g., Barsalou, 1999, 2003; Solomon & Barsalou, 2001). Studies supportive of such a viewhave shown that verifying a property of a concept in one modality, and then switching to verify a property of a different concept in a different modality generates temporal processing costs similar to the cost of switching modalities in perception. In addition to non-emotional (...)
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  44.  4
    American Katechon:When Political Theology Became International Relations Theory.Nicolas Guilhot - 2010 - Constellations 17 (2):224-253.
  45.  59
    Is there a place for psychedelics in philosophy?Nicolas Langlitz - 2016 - Common Knowledge 22 (3):373-384.
    Based on anthropological fieldwork on the revival of hallucinogen research as well as on the epistemic culture of neurophilosophy, this Common Knowledge guest column examines two very different philosophical engagements with psychedelic drugs. In Thomas Metzinger's evidence-based philosophy of mind, hallucinogens help to operationalize questions about the nature of consciousness. While this project contributes to the great divide between empirically enlightened moderns and tradition-oriented premoderns, Metzinger's neurophilosophical reanimation of the ancient conception of philosophy as cultura animi can build a bridge (...)
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  46.  29
    Switching Between Sensory and Affective Systems Incurs Processing Costs.Nicolas Vermeulen, Paula M. Niedenthal & Olivier Luminet - 2007 - Cognitive Science 31 (1):183-192.
    Recent models of the conceptual system hold that concepts are grounded in simulations of actual experiences with instances of those concepts in sensory-motor systems (e.g., Barsalou, 1999, 2003; Solomon & Barsalou, 2001). Studies supportive of such a viewhave shown that verifying a property of a concept in one modality, and then switching to verify a property of a different concept in a different modality generates temporal processing costs similar to the cost of switching modalities in perception. In addition to non-emotional (...)
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  47. The Development of Arabic Logic.Nicolas Rescher - 1965 - Foundations of Language 1 (4):359-360.
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  48.  11
    A Context‐Dependent Bayesian Account for Causal‐Based Categorization.Nicolás Marchant, Tadeg Quillien & Sergio E. Chaigneau - 2023 - Cognitive Science 47 (1):e13240.
    The causal view of categories assumes that categories are represented by features and their causal relations. To study the effect of causal knowledge on categorization, researchers have used Bayesian causal models. Within that framework, categorization may be viewed as dependent on a likelihood computation (i.e., the likelihood of an exemplar with a certain combination of features, given the category's causal model) or as a posterior computation (i.e., the probability that the exemplar belongs to the category, given its features). Across three (...)
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  49.  29
    Les Soulèvements de la Terre.Nicolas Haeringer - 2023 - Multitudes 92 (3):118-121.
    L’auteur souhaite s’extraire du piège consistant à s’enferrer dans le débat sur le maintien de l’ordre pour se pencher sur les raisons profondes qui sous-tendent la répression brutale contre les Soulèvements de la Terre. Pour lui, il s’agit de réprimer la remise en cause du système sur le plan de la production (et non plus sur celui de la consommation) par la défense des territoires. Ceci traduit l’affrontement de deux mondes, la remise en cause du rapport entre humain·es et autres (...)
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  50. Identification and Appearance as Epistemic Groundwork.Nicolas C. Gonzalez - 2023 - Logos and Episteme 14 (4):439-449.
    The idea that appearances provide justifications for beliefs—the principle of phenomenal conservatism—is self-evidently true. In the case of cognitive penetration, however, it seems that certain irrational etiologies of a belief may influence the epistemic quality of that belief. Susanna Siegel argues that these etiologies lead to ‘epistemic downgrade.’ Instead of providing us with a decisive objection, cognitive penetration calls for us to clarify our epistemic framework by understanding the formative parts of appearances. In doing so, the two different but inseparable (...)
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