Results for 'mutation bias'

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  1.  40
    Genome analyses substantiate male mutation bias in many species.Melissa A. Wilson Sayres & Kateryna D. Makova - 2011 - Bioessays 33 (12):938-945.
    In many species the mutation rate is higher in males than in females, a phenomenon denoted as male mutation bias. This is often observed in animals where males produce many more sperm than females produce eggs, and is thought to result from differences in the number of replication‐associated mutations accumulated in each sex. Thus, studies of male mutation bias have the capacity to reveal information about the replication‐dependent or replication‐independent nature of different mutations. The availability (...)
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  2.  11
    A Trait-based framework for mutation bias as a driver of long-term evolutionary trends.Julian Z. Xue, André Costopoulos & Frédéric Guichard - 2016 - Complexity 21 (5):331-345.
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  3.  35
    An empirical test of the mutational landscape model of adaptation using a single-stranded DNA virus.D. R. Rokyta, P. Joyce, S. B. Caudle & H. A. Wichman - 2005 - Nature Genetics 37 (4):441-444.
    The primary impediment to formulating a general theory for adaptive evolution has been the unknown distribution of fitness effects for new beneficial mutations. By applying extreme value theory, Gillespie circumvented this issue in his mutational landscape model for the adaptation of DNA sequences, and Orr recently extended Gillespie's model, generating testable predictions regarding the course of adaptive evolution. Here we provide the first empirical examination of this model, using a single-stranded DNA bacteriophage related to phiX174, and find that our data (...)
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  4.  7
    Negative CG dinucleotide bias: An explanation based on feedback loops between Arginine codon assignments and theoretical minimal RNA rings.Jacques Demongeot, Andrés Moreira & Hervé Seligmann - 2021 - Bioessays 43 (3):2000071.
    Theoretical minimal RNA rings are candidate primordial genes evolved for non‐redundant coding of the genetic code's 22 coding signals (one codon per biogenic amino acid, a start and a stop codon) over the shortest possible length: 29520 22‐nucleotide‐long RNA rings solve this min‐max constraint. Numerous RNA ring properties are reminiscent of natural genes. Here we present analyses showing that all RNA rings lack dinucleotide CG (a mutable, chemically instable dinucleotide coding for Arginine), bearing a resemblance to known CG‐depleted genomes. CG (...)
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  5.  13
    Meiotic recombination: A mechanism for tracking and eliminating mutations?Bruce D. McKee - 1996 - Bioessays 18 (5):411-419.
    The function of meiotic recombination has remained controversial, despite recent inroads into mechanisms. Ideas concerning a possible role of recombination in the elimination or efficient incorporation of mutations have been backed by theoretical studies but have lacked empirical support. Recent investigations into the basis for local variations in recombination frequency in yeast have uncovered a strong association between recombination initiation sites and transcriptional regulatory sequences. Other recent studies indicate a strong correlation between transcription and mutation rates in yeast genes. (...)
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  6.  28
    A note on deduction theorem for gödel's propositional calculus G.Ewa Żarnecka-Biaŀy - 1968 - Studia Logica 23 (1):35 - 41.
  7.  12
    A note on deduction theorem for Gödel's propositional calculus G4.Ewa Żarnecka-Biaŀy - 1968 - Studia Logica 23 (1):35-40.
  8. Apáczai Csere János: Kismonográfia.Ernő Fábián - 1975 - Kolozsvár-Napoca: Dacia.
     
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  9.  4
    A fájdalom embere: találgatások a halálról.László Fábián - 1997 - Budapest: Kráter Műhely Egyesület.
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  10. A gond embere: létváz.László Fábián - 2002 - Veszprém: Művészetek Háza.
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  11. Semantica e lessicologia storiche: atti del XXXII Congresso internazionale di studi, Budapest 29-31 ottobre 1998.Zsuzsanna Fábián & Giampaolo Salvi (eds.) - 2001 - Roma: Bulzoni.
     
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  12. The gender of illiberalism : new transnational alliances against open societies in Central and Eastern Europe.Katalin Fábián - 2023 - In Christof Royer & Liviu Matei (eds.), Open society unresolved: the contemporary relevance of a contested idea. New York: Central European University Press.
  13.  6
    Művészet és tér: Hamvas Béla-konferencia balatonfüred, 2014. március 21-22.Krisztián Tóbiás, László Cserép & István Nádler (eds.) - 2014 - Balatonfüred: Balatonfüred Városért Közalapítvány.
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  14. Australasian Journal of Philosophy Contents of Volume 91.Present Desire Satisfaction, Past Well-Being, Volatile Reasons, Epistemic Focal Bias, Some Evidence is False, Counting Stages, Vague Entailment, What Russell Couldn'T. Describe, Liberal Thinking & Intentional Action First - 2013 - Australasian Journal of Philosophy 91 (4).
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  15.  21
    Opting out: confidentiality and availability of an ‘alibi’ for potential living kidney donors in the USA: Table 1.Carrie Thiessen, Yunsoo A. Kim, Richard Formica, Margaret Bia & Sanjay Kulkarni - 2015 - Journal of Medical Ethics 41 (7):506-510.
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  16.  20
    Sanctification, Hardening of the Heart, and Frankfurt's Concept of.On Some Worldly Worries, Care Justice & Gender Bias - 1988 - Journal of Philosophy 85 (8):436-437.
  17.  28
    Why are most organelle genomes transmitted maternally?Stephan Greiner, Johanna Sobanski & Ralph Bock - 2015 - Bioessays 37 (1):80-94.
    Why the DNA‐containing organelles, chloroplasts, and mitochondria, are inherited maternally is a long standing and unsolved question. However, recent years have seen a paradigm shift, in that the absoluteness of uniparental inheritance is increasingly questioned. Here, we review the field and propose a unifying model for organelle inheritance. We argue that the predominance of the maternal mode is a result of higher mutational load in the paternal gamete. Uniparental inheritance evolved from relaxed organelle inheritance patterns because it avoids the spread (...)
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  18.  38
    Umbrella and basket trials in oncology: ethical challenges.Karolina Strzebonska & Marcin Waligora - 2019 - BMC Medical Ethics 20 (1):1-10.
    Novel precision oncology trial designs, such as basket and umbrella trials, are designed to test new anticancer agents in more effective and affordable ways. However, they present some ethical concerns referred to scientific validity, risk-benefit balance and informed consent. Our aim is to discuss these issues in basket and umbrella trials, giving examples of two ongoing cancer trials: NCI-MATCH (National Cancer Institute – Molecular Analysis for Therapy Choice) and Lung-MAP (Lung Cancer Master Protocol) study. We discuss three ethical requirements for (...)
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  19.  42
    Meme and variations: A computational model of cultural evolution.L. Gabora - 1995 - In [Book Chapter].
    This paper describes a computational model of how ideas, or memes, evolve through the processes of variation, selection, and replication. Every iteration, each neural-network based agent in an artificial society has the opportunity to acquire a new meme, either through 1) INNOVATION, by mutating a previously-learned meme, or 2) IMITATION, by copying a meme performed by a neighbor. Imitation, mental simulation, and using past experience to bias mutation all increase the rate at which fitter memes evolve. Memes at (...)
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  20.  8
    From Stars to Brains: Milestones in the Planetary Evolution of Life and Intelligence.Andrew Y. Glikson - 2019 - Cham: Springer Verlag.
    The permutation of basic atoms—nitrogen, hydrogen, oxygen, carbon and phosphorus―into the biomolecules DNA and RNA, subsequently evolved in cells and brains, defining the origin of life and intelligence, remains unexplained. Equally the origin of the genetic information and the intertwined nature of ‘hardware’ and ‘software’ involved in the evolution of bio-molecules and the cells are shrouded in mystery. This treatise aims at exploring individual and swarm behaviour patterns which potentially hint at as yet unknown biological principles. It reviews theories of (...)
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  21.  30
    Examining the “Best of Both Worlds” of Grammatical Evolution.Peter Whigham, Grant Dick, James Maclaurin & Caitlin Owen - 2015 - Proceedings of the 2015 Genetic and Evolutionary Computation 2015:1111-1118.
    Grammatical Evolution (GE) has a long history in evolutionary computation. Central to the behaviour of GE is the use of a linear representation and grammar to map individuals from search spaces into problem spaces. This genotype to phenotype mapping is often argued as a distinguishing property of GE relative to other techniques, such as context-free grammar genetic programming (CFG-GP). Since its initial description, GE research has attempted to incorporate information from the grammar into crossover, mutation, and individual initialisation, blurring (...)
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  22.  27
    Phylogeny of γ‐proteobacteria: resolution of one branch of the universal tree?James R. Brown & Craig Volker - 2004 - Bioessays 26 (5):463-468.
    The reconstruction of bacterial evolutionary relationships has proven to be a daunting task because variable mutation rates and horizontal gene transfer (HGT) among species can cause grave incongruities between phylogenetic trees based on single genes. Recently, a highly robust phylogenetic tree was constructed for 13 γ‐proteobacteria using the combined alignments of 205 conserved orthologous proteins.1 Only two proteins had incongruent tree topologies, which were attributed to HGT between Pseudomonas species and Vibrio cholerae or enterics. While the evolutionary relationships among (...)
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  23. Bias and Knowledge: Two Metaphors.Erin Beeghly - 2020 - In Erin Beeghly & Alex Madva (eds.), An Introduction to Implicit Bias: Knowledge, Justice, and the Social Mind. New York, NY, USA: Routledge. pp. 77-98.
    If you care about securing knowledge, what is wrong with being biased? Often it is said that we are less accurate and reliable knowers due to implicit biases. Likewise, many people think that biases reflect inaccurate claims about groups, are based on limited experience, and are insensitive to evidence. Chapter 3 investigates objections such as these with the help of two popular metaphors: bias as fog and bias as shortcut. Guiding readers through these metaphors, I argue that they (...)
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  24. Implicit Bias as Mental Imagery.Bence Nanay - 2021 - Journal of the American Philosophical Association 7 (3):329-347.
    What is the mental representation that is responsible for implicit bias? What is this representation that mediates between the trigger and the biased behavior? My claim is that this representation is neither a propositional attitude nor a mere association. Rather, it is mental imagery: perceptual processing that is not directly triggered by sensory input. I argue that this view captures the advantages of the two standard accounts without inheriting their disadvantages. Further, this view also explains why manipulating mental imagery (...)
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  25. Prestige Bias: An Obstacle to a Just Academic Philosophy.Helen De Cruz - 2018 - Ergo: An Open Access Journal of Philosophy 5.
    This paper examines the role of prestige bias in shaping academic philosophy, with a focus on its demographics. I argue that prestige bias exacerbates the structural underrepresentation of minorities in philosophy. It works as a filter against (among others) philosophers of color, women philosophers, and philosophers of low socio-economic status. As a consequence of prestige bias our judgments of philosophical quality become distorted. I outline ways in which prestige bias in philosophy can be mitigated.
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  26.  49
    Bias in Context: An Introduction to the Symposium.Erin Beeghly & Jules Holroyd - 2020 - Journal of Applied Philosophy 72 (2):163-168.
    In this introduction, we acquaint readers with a selection of work coming out of the "Bias in Context" conference series, which ran from 2016 to 2017. Featured authors in the symposium include Gabriella Beckles-Raymond (writing about bad faith and implicit bias explanations), Daniel Kelly and Lacey Davidson (writing about gender norms and the internalization of social structures), and Alex Madva (writing about solutions to racial integration and an empirical mindset). We sketch the larger themes of the conference, as (...)
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  27. Implicit Bias, Moods, and Moral Responsibility.Alex Madva - 2017 - Pacific Philosophical Quarterly 99 (S1):53-78.
    Are individuals morally responsible for their implicit biases? One reason to think not is that implicit biases are often advertised as unconscious, ‘introspectively inaccessible’ attitudes. However, recent empirical evidence consistently suggests that individuals are aware of their implicit biases, although often in partial and inarticulate ways. Here I explore the implications of this evidence of partial awareness for individuals’ moral responsibility. First, I argue that responsibility comes in degrees. Second, I argue that individuals’ partial awareness of their implicit biases makes (...)
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  28.  26
    Mutation and evolution: Conceptual possibilities.Adi Livnat & Alan C. Love - 2024 - Bioessays 46 (2):2300025.
    Although random mutation is central to models of evolutionary change, a lack of clarity remains regarding the conceptual possibilities for thinking about the nature and role of mutation in evolution. We distinguish several claims at the intersection of mutation, evolution, and directionality and then characterize a previously unrecognized category: complex conditioned mutation. Empirical evidence in support of this category suggests that the historically famous fluctuation test should be revisited, and new experiments should be undertaken with emerging (...)
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  29. Future bias in action: does the past matter more when you can affect it?Andrew J. Latham, Kristie Miller, James Norton & Christian Tarsney - 2020 - Synthese 198 (12):11327-11349.
    Philosophers have long noted, and empirical psychology has lately confirmed, that most people are “biased toward the future”: we prefer to have positive experiences in the future, and negative experiences in the past. At least two explanations have been offered for this bias: belief in temporal passage and the practical irrelevance of the past resulting from our inability to influence past events. We set out to test the latter explanation. In a large survey, we find that participants exhibit significantly (...)
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  30. Implicit bias, ideological bias, and epistemic risks in philosophy.Uwe Peters - 2018 - Mind and Language 34 (3):393-419.
    It has been argued that implicit biases are operative in philosophy and lead to significant epistemic costs in the field. Philosophers working on this issue have focussed mainly on implicit gender and race biases. They have overlooked ideological bias, which targets political orientations. Psychologists have found ideological bias in their field and have argued that it has negative epistemic effects on scientific research. I relate this debate to the field of philosophy and argue that if, as some studies (...)
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  31. Bias and values in scientific research.Torsten Wilholt - 2009 - Studies in History and Philosophy of Science Part A 40 (1):92-101.
    When interests and preferences of researchers or their sponsors cause bias in experimental design, data interpretation or dissemination of research results, we normally think of it as an epistemic shortcoming. But as a result of the debate on science and values, the idea that all extra-scientific influences on research could be singled out and separated from pure science is now widely believed to be an illusion. I argue that nonetheless, there are cases in which research is rightfully regarded as (...)
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  32. Generalization Bias in Science.Uwe Peters, Alexander Krauss & Oliver Braganza - 2022 - Cognitive Science 46 (9):e13188.
    Many scientists routinely generalize from study samples to larger populations. It is commonly assumed that this cognitive process of scientific induction is a voluntary inference in which researchers assess the generalizability of their data and then draw conclusions accordingly. We challenge this view and argue for a novel account. The account describes scientific induction as involving by default a generalization bias that operates automatically and frequently leads researchers to unintentionally generalize their findings without sufficient evidence. The result is unwarranted, (...)
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  33. Persistent bias in expert judgments about free will and moral responsibility: A test of the Expertise Defense.Eric Schulz, Edward T. Cokely & Adam Feltz - 2011 - Consciousness and Cognition 20 (4):1722-1731.
    Many philosophers appeal to intuitions to support some philosophical views. However, there is reason to be concerned about this practice as scientific evidence has documented systematic bias in philosophically relevant intuitions as a function of seemingly irrelevant features (e.g., personality). One popular defense used to insulate philosophers from these concerns holds that philosophical expertise eliminates the influence of these extraneous factors. Here, we test this assumption. We present data suggesting that verifiable philosophical expertise in the free will debate-as measured (...)
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  34. Bias towards the future.Kristie Miller, Preston Greene, Andrew J. Latham, James Norton, Christian Tarsney & Hannah Tierney - 2022 - Philosophy Compass 17 (8):e12859.
    All else being equal, most of us typically prefer to have positive experiences in the future rather than the past and negative experiences in the past rather than the future. Recent empirical evidence tends not only to support the idea that people have these preferences, but further, that people tend to prefer more painful experiences in their past rather than fewer in their future (and mutatis mutandis for pleasant experiences). Are such preferences rationally permissible, or are they, as time-neutralists contend, (...)
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  35.  78
    Bias in Human Reasoning: Causes and Consequences.Jonathan St B. T. Evans (ed.) - 1990 - Psychology Press.
    This book represents the first major attempt by any author to provide an integrated account of the evidence for bias in human reasoning across a wide range of disparate psychological literatures. The topics discussed involve both deductive and inductive reasoning as well as statistical judgement and inference. In addition, the author proposes a general theoretical approach to the explanations of bias and considers the practical implications for real world decision making. The theoretical stance of the book is based (...)
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  36. Implicit Bias, Character and Control.Jules Holroyd & Daniel Kelly - 2016 - In Alberto Masala & Jonathan Webber (eds.), From Personality to Virtue: Essays on the Philosophy of Character. Oxford: Oxford University Press UK. pp. 106-133.
    Our focus here is on whether, when influenced by implicit biases, those behavioural dispositions should be understood as being a part of that person’s character: whether they are part of the agent that can be morally evaluated.[4] We frame this issue in terms of control. If a state, process, or behaviour is not something that the agent can, in the relevant sense, control, then it is not something that counts as part of her character. A number of theorists have argued (...)
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  37. Bias, Structure, and Injustice: A Reply to Haslanger.Robin Zheng - 2018 - Feminist Philosophy Quarterly 4 (1):1-30.
    Sally Haslanger has recently argued that philosophical focus on implicit bias is overly individualist, since social inequalities are best explained in terms of social structures rather than the actions and attitudes of individuals. I argue that questions of individual responsibility and implicit bias, properly understood, do constitute an important part of addressing structural injustice, and I propose an alternative conception of social structure according to which implicit biases are themselves best understood as a special type of structure.
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  38. Anthropic bias: observation selection effects in science and philosophy.Nick Bostrom - 2002 - New York: Routledge.
    _Anthropic Bias_ explores how to reason when you suspect that your evidence is biased by "observation selection effects"--that is, evidence that has been filtered by the precondition that there be some suitably positioned observer to "have" the evidence. This conundrum--sometimes alluded to as "the anthropic principle," "self-locating belief," or "indexical information"--turns out to be a surprisingly perplexing and intellectually stimulating challenge, one abounding with important implications for many areas in science and philosophy. There are the philosophical thought experiments and paradoxes: (...)
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  39. Bias and Perception.Susanna Siegel - 2020 - In Erin Beeghly & Alex Madva (eds.), An Introduction to Implicit Bias: Knowledge, Justice, and the Social Mind. New York, NY, USA: Routledge. pp. 99-115.
  40. Anthropic Bias: Observation Selection Effects in Science and Philosophy.Nick Bostrom - 2002 - New York: Routledge.
    _Anthropic Bias_ explores how to reason when you suspect that your evidence is biased by "observation selection effects"--that is, evidence that has been filtered by the precondition that there be some suitably positioned observer to "have" the evidence. This conundrum--sometimes alluded to as "the anthropic principle," "self-locating belief," or "indexical information"--turns out to be a surprisingly perplexing and intellectually stimulating challenge, one abounding with important implications for many areas in science and philosophy. There are the philosophical thought experiments and paradoxes: (...)
     
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  41. Implicit bias, confabulation, and epistemic innocence.Ema Sullivan-Bissett - 2014 - Consciousness and Cognition 33:548-560.
    In this paper I explore the nature of confabulatory explanations of action guided by implicit bias. I claim that such explanations can have significant epistemic benefits in spite of their obvious epistemic costs, and that such benefits are not otherwise obtainable by the subject at the time at which the explanation is offered. I start by outlining the kinds of cases I have in mind, before characterising the phenomenon of confabulation by focusing on a few common features. Then I (...)
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  42.  55
    Multiple mutating masculinities: Of maps and men.Janell Watson - 2015 - Angelaki 20 (1):107-121.
    :Masculinity studies recognizes that masculinity is culturally variable, historically specific, multidimensional, and multiple. This mutability is reflected in concepts like hegemonic masculinity, hybrid masculinity, mosaic masculinities, personalized masculinities, sensual masculinity, and inclusive masculinity. Building on this idea of mutating masculinity, this paper addresses a theoretical problem acknowledged by many scholars: how to account for both the singular intimacy of lived experience and the commonality of shared social norms. In order to build a mutable model that encompasses both experience and norms (...)
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  43.  70
    Bias, norms, introspection, and the bias blind spot1.Thomas Kelly - 2024 - Philosophy and Phenomenological Research 108 (1):81-105.
    In this paper, I sketch a general framework for theorizing about bias and bias attributions. According to the account, paradigmatic cases of bias involve systematic departures from genuine norms. I attempt to show that the account illuminates a number of important psychological phenomena, including: the fact that accusations of bias frequently inspire not only denials but also countercharges of bias (“you only think that I'm biased because you're biased!”); the fact that we tend to see (...)
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  44. Implicit bias.Michael Brownstein - 2017 - Stanford Encyclopedia of Philosophy.
    “Implicit bias” is a term of art referring to relatively unconscious and relatively automatic features of prejudiced judgment and social behavior. While psychologists in the field of “implicit social cognition” study “implicit attitudes” toward consumer products, self-esteem, food, alcohol, political values, and more, the most striking and well-known research has focused on implicit attitudes toward members of socially stigmatized groups, such as African-Americans, women, and the LGBTQ community.[1] For example, imagine Frank, who explicitly believes that women and men are (...)
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  45. Future Bias and Regret.Sayid Bnefsi - 2023 - In David Jakobsen, Peter Øhrstrøm & Per Hasle (eds.), Logic and Philosophy of Time: The History and Philosophy of Tense-Logic. Aalborg: Aalborg University Press. pp. 1-13.
    The rationality of future bias figures crucially in various metaphysical and ethical arguments (Prior 1959; Parfit 1984; Fischer 2019). Recently, however, philosophers have raised several arguments to the effect that future bias is irrational (Dougherty 2011; Suhler and Callender 2012; Greene and Sullivan 2015). Particularly, Greene and Sullivan (2015) claim that future bias is irrational because future bias leads to two kinds of irrational planning behaviors in agents who also seek to avoid regret. In this paper, (...)
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  46.  52
    Avoiding bias in medical ethical decision-making. Lessons to be learnt from psychology research.Heidi Albisser Schleger, Nicole R. Oehninger & Stella Reiter-Theil - 2011 - Medicine, Health Care and Philosophy 14 (2):155-162.
    When ethical decisions have to be taken in critical, complex medical situations, they often involve decisions that set the course for or against life-sustaining treatments. Therefore the decisions have far-reaching consequences for the patients, their relatives, and often for the clinical staff. Although the rich psychology literature provides evidence that reasoning may be affected by undesired influences that may undermine the quality of the decision outcome, not much attention has been given to this phenomenon in health care or ethics consultation. (...)
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  47. Bias in algorithmic filtering and personalization.Engin Bozdag - 2013 - Ethics and Information Technology 15 (3):209-227.
    Online information intermediaries such as Facebook and Google are slowly replacing traditional media channels thereby partly becoming the gatekeepers of our society. To deal with the growing amount of information on the social web and the burden it brings on the average user, these gatekeepers recently started to introduce personalization features, algorithms that filter information per individual. In this paper we show that these online services that filter information are not merely algorithms. Humans not only affect the design of the (...)
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  48.  99
    Commensuration Bias in Peer Review.Carole J. Lee - 2015 - Philosophy of Science 82 (5):1272-1283,.
    To arrive at their final evaluation of a manuscript or grant proposal, reviewers must convert a submission’s strengths and weaknesses for heterogeneous peer review criteria into a single metric of quality or merit. I identify this process of commensuration as the locus for a new kind of peer review bias. Commensuration bias illuminates how the systematic prioritization of some peer review criteria over others permits and facilitates problematic patterns of publication and funding in science. Commensuration bias also (...)
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  49.  20
    Genomic mutation rates: what high‐throughput methods can tell us.Koodali T. Nishant, Nadia D. Singh & Eric Alani - 2009 - Bioessays 31 (9):912-920.
    High‐throughput DNA analyses are increasingly being used to detect rare mutations in moderately sized genomes. These methods have yielded genome mutation rates that are markedly higher than those obtained using pre‐genomic strategies. Recent work in a variety of organisms has shown that mutation rate is strongly affected by sequence context and genome position. These observations suggest that high‐throughput DNA analyses will ultimately allow researchers to identify trans‐acting factors and cis sequences that underlie mutation rate variation. Such work (...)
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  50.  20
    Mutations in Citizenship.Aihwa Ong - 2006 - Theory, Culture and Society 23 (2-3):499-505.
    Mutations in citizenship are crystallized in an ever-shifting landscape shaped by the flows of markets, technologies, and populations. We are moving beyond the citizenship-versus-statelessness model. First, the elements of citizenship are becoming disarticulated from each other, and becoming re-articulated with universalizing criteria of neoliberalism and human rights. Such ‘global assemblages’ define zones of political entitlements and claims. Second, the space of the ‘assemblage’, rather than the national terrain, becomes the site for political mobilizations by diverse groups in motion. Three contrasting (...)
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