E-Synthesis: A Bayesian Framework for Causal Assessment in Pharmacosurveillance

Frontiers in Pharmacology 10 (2019)
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Abstract

Background: Evidence suggesting adverse drug reactions often emerges unsystematically and unpredictably in form of anecdotal reports, case series and survey data. Safety trials and observational studies also provide crucial information regarding the (un-)safety of drugs. Hence, integrating multiple types of pharmacovigilance evidence is key to minimising the risks of harm. Methods: In previous work, we began the development of a Bayesian framework for aggregating multiple types of evidence to assess the probability of a putative causal link between drugs and side effects. This framework arose out of a philosophical analysis of the Bradford Hill Guidelines. In this article, we expand the Bayesian framework and add “evidential modulators,” which bear on the assessment of the reliability of incoming study results. The overall framework for evidence synthesis, “E-Synthesis”, is then applied to a case study. Results: Theoretically and computationally, E-Synthesis exploits coherence of partly or fully independent evidence converging towards the hypothesis of interest (or of conflicting evidence with respect to it), in order to update its posterior probability. With respect to other frameworks for evidence synthesis, our Bayesian model has the unique feature of grounding its inferential machinery on a consolidated theory of hypothesis confirmation (Bayesian epistemology), and in allowing any data from heterogeneous sources (cell-data, clinical trials, epidemiological studies), and methods (e.g., frequentist hypothesis testing, Bayesian adaptive trials, etc.) to be quantitatively integrated into the same inferential framework. Conclusions: E-Synthesis is highly flexible concerning the allowed input, while at the same time relying on a consistent computational system, that is philosophically and statistically grounded. Furthermore, by introducing evidential modulators, and thereby breaking up the different dimensions of evidence (strength, relevance, reliability), E-Synthesis allows them to be explicitly tracked in updating causal hypotheses.

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On the Assessed Strength of Agents’ Bias.Jürgen Landes & Barbara Osimani - 2020 - Journal for General Philosophy of Science / Zeitschrift für Allgemeine Wissenschaftstheorie 51 (4):525-549.

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References found in this work

Causality: Models, Reasoning and Inference.Judea Pearl - 2000 - New York: Cambridge University Press.
Bayesian Epistemology.Luc Bovens & Stephan Hartmann - 2003 - Oxford: Oxford University Press. Edited by Stephan Hartmann.
The direction of time.Hans Reichenbach - 1956 - Mineola, N.Y.: Dover Publications. Edited by Maria Reichenbach.
Getting Causes From Powers.Stephen Mumford & Rani Lill Anjum - 2011 - Oxford, GB: Oxford University Press. Edited by Rani Lill Anjum.
Causality: Models, Reasoning and Inference.Judea Pearl - 2000 - Tijdschrift Voor Filosofie 64 (1):201-202.

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