J. S. Bell's argument that only “nonlocal” hidden variable theories can reproduce the quantum statistical correlations of the singlet spin state in the case of two separated spin-1/2 particles is examined in terms of Wigner's formulation. It is shown that a similar argument applies to a single spin-1/2 particle, and that the exclusion of hidden variables depends on an obviously untenable assumption concerning conditional probabilities. The problem of completeness is discussed briefly, and the grounds for rejecting a phase-space (...) reconstruction of the quantum statistics are clarified. (shrink)

It is understandable that, since the fall of the Berlin wall, researchers interested in the social and political upheavals brought about by this phase of history should have concentrated their attentions on what had been the immediate sphere of influence of the Soviet centre of power. However we are within our rights today to ask why our understanding of the structural (economic and social) transformations in what is conveniently called the ‘post-communist’ period and space, and of post-bipolarisation regional (...) relationships, should be confined to that region of the world corresponding to the ex-USSR and the Eastern countries. (shrink)

Schwinger’s algebra of microscopic measurement, with the associated complex field of transformation functions, is shown to provide the foundation for a discrete quantum phase space of known type, equipped with a Wigner function and a star product. Discrete position and momentum variables label points in the phase space, each taking \(N\) distinct values, where \(N\) is any chosen prime number. Because of the direct physical interpretation of the measurement symbols, the phase space structure is (...) thereby related to definite experimental configurations. (shrink)

The concept of probability space is generalized to that of stochastic probability space. This enables the introduction of representations of quantum mechanics on stochastic phase spaces. The resulting formulation of quantum statistical mechanics in terms of Γ-distribution functions bears a remarkable resemblance to its classical counterpart. Furthermore, both classical and quantum statistical mechanics can be formulated in one and the same master Liouville space overL 2(Γ). A joint derivation of a classical and quantum Boltzman equation provides (...) an illustration of the practical uses of these formalisms. (shrink)

In 1885, during initial discussions of J. C. Maxwell's celebrated thermodynamic demon, Whiting (1) observed that the demon-like velocity selection of molecules can occur in a gravitationally bound gas. Recently, a gravitational Maxwell demon has been proposed which makes use of this observation [D. P. Sheehan, J. Glick, and J. D. Means, Found. Phys. 30, 1227 (2000)]. Here we report on numerical simulations that detail its microscopic phase space structure. Results verify the previously hypothesized mechanism of its paradoxical (...) behavior. This system appears to be the only example of a fully classical mechanical Maxwell demon that has not been resolved in favor of the second law of thermodynamics. (shrink)

This paper is devoted to the study of the notion of the phase-space representation of quantum theory in both the nonrelativisitic and the relativisitic cases. Then, as a derived concept, the stochastic phase space is introduced and its connections with fuzzy set theory and probabilistic topological (in particular, metric) spaces are discussed.

David Malament argued that Hartry Field's nominalisation program is unlikely to be able to deal with non-space-time theories such as phase-space theories. We give a specific example of such a phase-space theory and argue that this presentation of the theory delivers explanations that are not available in the classical presentation of the theory. This suggests that even if phase-space theories can be nominalised, the resulting theory will not have the explanatory power of the (...) original. Phase-space theories thus raise problems for nominalists that go beyond Malament's initial concerns. Thanks to Mark Steiner, Jens Christian Bjerring, Ben Fraser, John Mathewson, and two anonymous referees for helpful comments on an earlier draft of this paper. CiteULike Connotea Del.icio.us What's this? (shrink)

In 1885, during initial discussions of J. C. Maxwell's celebrated thermodynamic demon, Whiting(1) observed that the demon-like velocity selection of molecules can occur in a gravitationally bound gas. Recently, a gravitational Maxwell demon has been proposed which makes use of this observation [D. P. Sheehan, J. Glick, and J. D. Means, Found. Phys. 30, 1227 (2000)]. Here we report on numerical simulations that detail its microscopic phase space structure. Results verify the previously hypothesized mechanism of its paradoxical behavior. (...) This system appears to be the only example of a fully classical mechanical Maxwell demon that has not been resolved in favor of the second law of thermodynamics. (shrink)

The category of coherent phase spaces introduced by the author is a refinement of the symplectic “category” of A. Weinstein. This category is *-autonomous and thus provides a denotational model for Multiplicative Linear Logic. Coherent phase spaces are symplectic manifolds equipped with a certain extra structure of “coherence”. They may be thought of as “infinitesimal” analogues of familiar coherent spaces of Linear Logic. The role of cliques is played by Lagrangian submanifolds of ambient spaces. Physically, a symplectic manifold (...) is the phase space of a classical dynamical system, and a Lagrangian submanifold is a phase of a short-wave oscillation. Typically, Lagrangian submanifolds represent such objects as short-wave approximations of wave functions in asymptotic quantization and wave fronts in geometrical optics. The coherent phase space semantics was motivated to a large extent by methods of geometric and asymptotic quantization and suggests some interesting intuitions on Linear Logic. In particular Lagrangian submanifold-cliques of types A and A can be interpreted as semiclassical limits of eigenstates of respectively position and momentum observables. These observables being canonically conjugate cannot be measured simultaneously, which corresponds to the idea that a formula A and its negation A cannot both simultaneously have proofs . We show that the coherent phase space semantics of Linear Logic enjoys several completeness properties in general much stronger than the usual full completeness with respect to the class of dinatural transformations. These properties of completeness in conjunction with a quite natural -physical meaning make the coherent phase space semantics an interesting object of investigation. (shrink)

Hamilton-Jacobi theory is applied to find appropriate canonical transformations for the calculation of the phase-space path integrals of the relativistic particle equations. Hence, canonical transformations and Hamilton-Jacobi theory are also introduced into relativistic quantum mechanics. Moreover, from the classical physics viewpoint, it is very interesting to find and to solve the Hamilton-Jacobi equations for the relativistic particle equations.

A generalization of the familiar de Broglie-Bohm interpretation of quantum mechanics is formulated, based on relinquishing the momentum relationship p=∇S and allowing a spread of momentum values at each position. The development of this framework also provides a new perspective on the well-known question of joint distributions for quantum mechanics. It is shown that, for an extension of the original model to be physically acceptable and consistent with experiment, it is necessary to impose certain restrictions on the associated joint distribution (...) for particle positions and momenta. These requirements thereby define a new class of possible models. In pursuing this line of reasoning, the main contributions of this paper are (i) to identify the restrictions that must be imposed, (ii) to demonstrate that joint distribution expressions satisfying them do exist, and (iii) to construct a sample model based on one such joint distribution. (shrink)

In an earlier article [Found. Phys. 30, 1191 (2000)], a quasiclassical phase space approximation for quantum projection operators was presented, whose accuracy increases in the limit of large basis size (projection subspace dimensionality). In a second paper [J. Chem. Phys. 111, 4869 (1999)], this approximation was used to generate a nearly optimal direct-product basis for representing an arbitrary (Cartesian) quantum Hamiltonian, within a given energy range of interest. From a few reduced-dimensional integrals, the method determines the optimal 1D (...) marginal Hamiltonians, whose eigenstates comprise the direct-product basis. In the present paper, this phase space optimized direct-product basis method is generalized to incorporate non-Cartesian coordinate spaces, composed of radii and angles, that arise in molecular applications. Analytical results are presented for certain standard systems, including rigid rotors, and three-body vibrators. (shrink)

While the Phase Space formulation of quantum mechanics has received considerable attention it has seldom been defended as a viable interpretation. In this paper I expound the Phase Space Picture, use it to provide a quasi-classical 'hidden variables' interpretation of quantum mechanics and offer a defence of it against various objections.

We analyze phase-space approaches to relativistic quantum mechanics from the viewpoint of the causal interpretation. In particular, we discuss the canonical phase space associated with stochastic quantization, its relation to Hilbert space, and the Wigner-Moyal formalism. We then consider the nature of Feynman paths, and the problem of nonlocality, and conclude that a perfectly consistent relativistically covariant interpretation of quantum mechanics which retains the notion of particle trajectory is possible.

We present a general derivation of the Duffin-Kemmer-Petiau (D.K.P) equation on the relativistic phase space proposed by Bohm and Hiley. We consider geometric algebras and the idea of algebraic spinors due to Riesz and Cartan. The generators βμ (p) of the D.K.P algebras are constructed in the standard fashion used to construct Clifford algebras out of bilinear forms. Free D.K.P particles and D.K.P particles in a prescribed external electromagnetic field are analized and general Liouville type equations for these (...) cases are obtained. Choosing particular values for the label p we classify the different types of the D.K.P Liouville operators. (shrink)

Emotion recognition systems have been of interest to researchers for a long time. Improvement of brain-computer interface systems currently makes EEG-based emotion recognition more attractive. These systems try to develop strategies that are capable of recognizing emotions automatically. There are many approaches due to different features extractions methods for analyzing the EEG signals. Still, Since the brain is supposed to be a nonlinear dynamic system, it seems a nonlinear dynamic analysis tool may yield more convenient results. A novel approach in (...) Symbolic Time Series Analysis for signal phase space partitioning and symbol sequence generating is introduced in this study. Symbolic sequences have been produced by means of spherical partitioning of phase space; then, they have been compared and classified based on the maximum value of a similarity index. Obtaining the automatic independent emotion recognition EEG-based system has always been discussed because of the subject-dependent content of emotion. Here we introduce a subject-independent protocol to solve the generalization problem. To prove our method’s effectiveness, we used the DEAP dataset, and we reached an accuracy of 98.44% for classifying happiness from sadness. It was 93.75% for three, 89.06% for four, and 85% for five emotional groups. According to these results, it is evident that our subject-independent method is more accurate rather than many other methods in different studies. In addition, a subject-independent method has been proposed in this study, which is not considered in most of the studies in this field. (shrink)

This year marks the 50th anniversary of the birth of the celebrated Wigner distribution function. Many advances made in various areas of science during the 50 year period can be attributed to the physical insights that the Wigner distribution function provides when applied to specific problems. In this paper the usefulness of the Wigner distribution function in collision theory is described.

A (to our knowledge) novel Generalized Nonlinear Schrödinger equation based on the modifications of Nottale-Cresson’s fractal-scale calculus and resulting from the noncommutativity of the phase space coordinates is explicitly derived. The modifications to the ground state energy of a harmonic oscillator yields the observed value of the vacuum energy density. In the concluding remarks we discuss how nonlinear and nonlocal QM wave equations arise naturally from this fractal-scale calculus formalism which may have a key role in the final (...) formulation of Quantum Gravity. (shrink)

Several versions exist of pseudo-classical models of the electron using Grassmann variables. Most of these require additional constraints on the variables, and it is these which, when quantized, lead to Dirac's equation. In addition, the Grassmann variables do not have physical interpretations. In this article a model is constructed which does not require constraints and in which the Grassmann variables can be interpreted as observables. Dirac's equation is obtained directly from quantization.

The application of geometry to physics has provided us with new insightful information about many physical theories such as classical mechanics, general relativity, and quantum geometry. The geometry also plays an important role in foundations of quantum mechanics and quantum information. In this work we discuss a geometric framework for mixed quantum states represented by density matrices, where the quantum phase space of density matrices is equipped with a symplectic structure, an almost complex structure, and a compatible Riemannian (...) metric. This compatible triple allow us to investigate arbitrary quantum systems. We will also discuss some applications of the geometric framework. (shrink)

We apply the Galilean covariant formulation of quantum dynamics to derive the phase-space representation of the Pauli–Schrödinger equation for the density matrix of spin-1/2 particles in the presence of an electromagnetic field. The Liouville operator for the particle with spin follows from using the Wigner–Moyal transformation and a suitable Clifford algebra constructed on the phase space of a (4 + 1)-dimensional space–time with Galilean geometry. Connections with the algebraic formalism of thermofield dynamics are also investigated.

We consider an oscillator subjected to a sudden change in equilibrium position or in effective spring constant, or both—to a “squeeze” in the language of quantum optics. We analyze the probability of transition from a given initial state to a final state, in its dependence on final-state quantum number. We make use of five sources of insight: Bohr-Sommerfeld quantization via bands in phase space, area of overlap between before-squeeze band and after-squeeze band, interference in phase space, (...) Wigner function as quantum update of B-S band and near-zone Fresnel diffraction as mockup Wigner function. (shrink)

The use of idealized models in science is by now well-documented. Such models are typically constructed in a “top-down” fashion: starting with an intractable theory or law and working down toward the phenomenon. This view of model-building has motivated a family of confirmation schemes based on the convergence of prediction and observation. This paper considers how chaotic dynamics blocks the convergence view of confirmation and has forced experimentalists to take a different approach to model-building. A method known as “phase (...) space reconstruction” not only reveals a lacuna in the philosophical literature on models, it also fails to conform to conventional views about how models are used to confirm a theory. (shrink)

We approach the relationship between classical and quantum theories in a new way, which allows both to be expressed in the same mathematical language, in terms of a matrix algebra in a phase space. This makes clear not only the similarities of the two theories, but also certain essential differences, and lays a foundation for understanding their relationship. We use the Wigner-Moyal transformation as a change of representation in phase space, and we avoid the problem of (...) “negative probabilities” by regarding the solutions of our equations as constants of the motion, rather than as statistical weight factors. We show a close relationship of our work to that of Prigogine and his group. We bring in a new nonnegative probability function, and we propose extensions of the theory to cover thermodynamic processes involving entropy changes, as well as the usual reversible processes. (shrink)

Accurate wind speed forecasting is an effective way to improve the safety and stability of power grid. A novel hybrid model based on twice decomposition, phase space reconstruction, and an improved multiverse optimizer-extreme learning machine is proposed to enhance the performance of short-term wind speed forecasting in this paper. In consideration of the nonstationarity of the wind speed signal, a twice decomposition based on improved complete ensemble empirical mode decomposition with adaptive noise, fuzzy entropy, and variational mode (...) decomposition is proposed to reduce the nonstationarity of the original signal firstly. Then the PSR based on C-C method is employed to reconstitute the decomposed signal as the input of the prediction model. Lastly, an improved multiverse optimizer is proposed to improve the stability and efficiency of ELM which is used as prediction model. Furthermore, two experiments are designed to verify the performance of the proposed method; the results indicate that the wind speed forecasting with twice decomposition of original wind speed signal is better than other once-decomposition methods and much better than forecasting without decomposition; the C-C-PSR method can determine the input dimension of ELM and improve the prediction accuracy of ELM; the IMVO has improved the stability of ELM, and the optimization efficiency is better than other comparison optimization methods. The results show that the proposed hybrid approach is a useful tool for short-term wind speed forecasting. (shrink)

We construct the Extended Relativity Theory in Born-Clifford-Phase spaces with an upper R and lower length λ scales (infrared/ultraviolet cutoff). The invariance symmetry leads naturally to the real Clifford algebra Cl (2, 6, R) and complexified Clifford Cl C (4) algebra related to Twistors. A unified theory of all Noncommutative branes in Clifford-spaces is developed based on the Moyal-Yang star product deformation quantization whose deformation parameter involves the lower/upper scale $$(\hbar \lambda / R)$$. Previous work led us to show (...) from first principles why the observed value of the vacuum energy density (cosmological constant) is given by a geometric mean relationship $$\rho \sim L_{\rm Planck}^{-2}R^{-2} = L_{P}^{-4} (L_{\rm Planck} / R)^{2} \sim 10^{-122}M_{\rm Planck}^4$$, and can be obtained when the infrared scale R is set to be of the order of the present value of the Hubble radius. We proceed with an extensive review of Smith’s 8D model based on the Clifford algebra Cl (1, 7) that reproduces at low energies the physics of the Standard Model and Gravity, including the derivation of all the coupling constants, particle masses, mixing angles,....with high precision. Geometric actions are presented like the Clifford-Space extension of Maxwell’s Electrodynamics, and Brandt’s action related to the 8D spacetime tangent-bundle involving coordinates and velocities (Finsler geometries). Finally we outline the reasons why a Clifford-Space Geometric Unification of all forces is a very reasonable avenue to consider and propose an Einstein-Hilbert type action in Clifford-Phase spaces (associated with the 8D Phase space) as a Unified Field theory action candidate that should reproduce the physics of the Standard Model plus Gravity in the low energy limit. (shrink)

The Wigner–Weyl mapping of quantum operators to classical phase space functions preserves the algebra, when operator multiplication is mapped to the binary “*” operation. However, this isomorphism is destroyed under the quasiclassical substitution of * with conventional multiplication; consequently, an approximate mapping is required if algebraic relations are to be preserved. Such a mapping is uniquely determined by the fundamental relations of quantum mechanics, as is shown in this paper. The resultant quasiclassical approximation leads to an algebraic derivation (...) of Thomas–Fermi theory, and a new quantization rule which—unlike semiclassical quantization—is non-invariant under action transformations of the Hamiltonian, in the same qualitative manner as the true eigenvalues. The quasiclassical eigenvalues are shown to be significantly more accurate than the corresponding semiclassical values, for a variety of 1D and 2D systems. In addition, certain standard refinements of semiclassical theory are shown to be easily incorporated into the quasiclassical formalism. (shrink)

The irreversibility in time, the multicausality on lines, and the uncertainty of feedbacks make economic systems and the predictions of economic chaotic time series possess the characteristics of high dimensionalities, multiconstraints, and complex nonlinearities. Based on genetic algorithm and fuzzy rules, the chaotic genetics combined with fuzzy decision-making can use simple, fast, and flexible means to complete the goals of automation and intelligence that are difficult to traditional predicting algorithms. Moreover, the new combined method’s ergodicity can perform nonrepetitive searches in (...) a global scope, hence improving the algorithm’s accuracy and efficiency. On the basis of summarizing and analyzing previous research works, this paper expounded the research status and significance of the prediction of economic chaotic time series, elaborated the development background, current status, and future challenges of the combined algorithm of chaotic genetics with fuzzy decision, introduced the basic principles of chaotic genetic algorithm and fuzzy decision algorithm, constructed a prediction model for economic chaotic time series, performed parameter synchronization optimization and moderate function construction, analyzed the prediction processes of economic chaotic time series, conducted phase space reconstruction and correlation dimension calculation, and finally carried out a simulation experiment with its result analysis. The study results show that the algorithm of chaotic genetics combined with fuzzy decision-making can dynamically adjust chaotic mutation operators and summarize fussy expert experiences. The phase space of its reconstructed chaotic attractor has high-precision predictability and can find orderly processes from changeable economic results, which in turn can be used to analyze and predict the complex economic chaotic time series. The study results of this paper provide a reference for further research on predictive analysis of economic chaotic time series based on chaotic genetics combined with fuzzy decision algorithm. (shrink)

Common spatial pattern is an effective algorithm for extracting electroencephalogram features of motor imagery ; however, CSP mainly aims at multichannel EEG signals, and its effect in extracting EEG features with fewer channels is poor—even worse than before using CSP. To solve the above problem, a new combined feature extraction method has been proposed in this study. For EEG signals from fewer channels, wavelet packet transform, fast ensemble empirical mode decomposition, and local mean decomposition were used to decompose the band-pass (...) filtered EEG into multiple time–frequency components, and the corresponding components were selected according to the frequency characteristics of MI or the correlation coefficient between its time–frequency components and the original EEG signal. Furthermore, phase space reconstruction was performed on the selected components after the three time-frequency decompositions, the maximum Lyapunov index was calculated, and the features were reconstructed; then, CSP projection mapping was used for the reconstructed features. The support vector machine probability output model was trained by the obtained three mappings. Probability outputs by three different support vector machines were then obtained. Finally, the classification of test samples was determined by the fusion of the Dempster–Shafer evidence theory at the decision level. The results showed that the accuracy of the proposed method was 95.71% on data set III of BCI competition II, which was 2.88% higher than the existing methods. On data set IIb of BCI competition IV, the average accuracy was 86.60%, which was 2.3% higher than the existing methods. This study verified the effectiveness of the proposed method and provided an approach for the research and development of the MI-BCI system based on fewer channels. (shrink)

The main features of how to build a Born’s Reciprocal Gravitational theory in curved phase-spaces are developed. By recurring to the nonlinear connection formalism of Finsler geometry a generalized gravitational action in the 8D cotangent space (curved phase space) can be constructed involving sums of 5 distinct types of torsion squared terms and 2 distinct curvature scalars ${\mathcal{R}}, {\mathcal{S}}$ which are associated with the curvature in the horizontal and vertical spaces, respectively. A Kaluza-Klein-like approach to the (...) construction of the curvature of the 8D cotangent space and based on the (torsionless) Levi-Civita connection is provided that yields the observed value of the cosmological constant and the Brans-Dicke-Jordan Gravity action in 4D as two special cases. It is found that the geometry of the momentum space can be linked to the observed value of the cosmological constant when the curvature in $\mathit{momentum}$ space is very large, namely the small size of P is of the order of $( 1/R_{\mathit{Hubble}})$ . Finally we develop a Born’s reciprocal complex gravitational theory as a local gauge theory in 8D of the $\mathit{deformed}$ Quaplectic group that is given by the semi-direct product of U(1,3) with the $\mathit{deformed}$ (noncommutative) Weyl-Heisenberg group involving four $\mathit{noncommutative}$ coordinates and momenta. The metric is complex with symmetric real components and antisymmetric imaginary ones. An action in 8D involving 2 curvature scalars and torsion squared terms is presented. (shrink)

The quantum corrections related to the ideal gas model often considered are those associated to the bosonic or fermionic nature of particles. However, in this work, other kinds of corrections related to the quantum nature of phase space are highlighted. These corrections are introduced as improvements in the expression of the partition function of an ideal gas. Then corrected thermodynamics properties of the ideal gas are deduced. Both the non-relativistic quantum and relativistic quantum cases are considered. It is (...) shown that the corrections in the non-relativistic quantum case may be particularly useful to describe the deviation from the Maxwell–Boltzmann model at low temperature and/or in confined space. These corrections can be considered as including the description of quantum size and shape effects. For the relativistic quantum case, the corrections could be relevant for confined space and when the thermal energy of each particle is comparable to their rest energy. The corrections appear mainly as modifications in the thermodynamic equation of state and in the expressions of the partition function and thermodynamic functions like entropy, internal energy and free energy. Expressions corresponding to the Maxwell–Boltzmann model are shown to be asymptotic limits of the corrected expressions. (shrink)

The quantum transition probability assignment is an equiareal transformation from the annulus of symplectic spinorial amplitudes to the disk of complex state vectors, which makes it equivalent to the equiareal projection of Archimedes. The latter corresponds to a symplectic synchronization method, which applies to the quantum phase space in view of Weyl’s quantization approach involving an Abelian group of unitary ray rotations. We show that Archimedes’ method of synchronization, in terms of a measure-preserving transformation to an equiareal disk, (...) imposes the integrality of the quantum of action, and requires the extension of the classical moment map from the real line to the circle. Additionally, the same synchronization method is encoded in the structure of the Heisenberg group, viewed as a principal bundle with a connection, whose curvature and anholonomy is expressed in terms of area bounding loops in relation to the underlying Abelian shadow on a symplectic plane. In this manner, we show that the geometric phase pertains to the minimal synchronized area \ of the 2-d symplectic Abelian shadow of the symplectic ball, modulo \. The integrality condition naturally leads to the consideration of modular commutative observables pertaining to the role of the discrete Heisenberg group. We prove that the structural transition from non-commutativity to modular commutativity in accordance to Weyl’s group-theoretic commutation relations takes place via universal factorization through the discrete Heisenberg group. In this way, we derive a homology-theoretic formulation of the synchronization method in terms of the area-bounding cells of the modular lattice \ in relation to any Abelian symplectic shadow. Thus, we finally obtain the physical interpretation of the analytic representation of quantum states as theta functions corresponding to the sections of a complex line bundle with an integral symplectic structure. (shrink)

The concept of attractors is considered critical in the study of dynamical systems as they represent the set of states that a system gravitates toward. However, it is generally difficult to analyze attractors in complex systems due to multiple reasons including chaos, high-dimensionality, and stochasticity. This paper explores a novel approach to analyzing attractors in complex systems by utilizing networks to represent phase spaces. We accomplish this by discretizing phase space and defining node associations with attractors by (...) finding sink strongly connected components within these networks. Moreover, the network representation of phase space facilitates the use of well-established techniques of network analysis to study the phase space of a complex system. We show the latter by introducing a new node-based metric called attractivity which can be used in conjunction with the SSCC as they are highly correlated. We demonstrate the proposed method by applying it to several chaotic dynamical systems and a large-scale agent-based social simulation model. (shrink)

Often it is assumed that a quantum state or a phase-space distribution must be normalizable. Here it is shown that even if it is not normalizable, one may be able to extract normalized observational probabilities from it.

The quasiclassical representations of quantum theory, generalizing the concept of a phase-space representation of quantum mechanics, are studied with particular emphasis on some questions connected with the Jordan structure of the classical and quantum algebras of observables. A generalized version of the theorem of Gleason, Kahane, and Zelazko is used to establish some nonclassical features of these representations.

Phase separation underlies the formation of biomolecular condensates. We hypothesize the cellular processes that occur within condensates shape their structural features. We use the example of transcription to discuss structure–function relationships in condensates. Various types of transcriptional condensates have been reported across the evolutionary spectrum in the cell nucleus as well as in mitochondrial and bacterial nucleoids. In vitro and in vivo observations suggest that transcriptional activity of condensates influences their supramolecular structure, which in turn affects their function. Condensate (...) organization thus becomes driven by differences in miscibility among the DNA and proteins of the transcription machinery and the RNA transcripts they generate. These considerations are in line with the notion that cellular processes shape the structural properties of condensates, leading to a dynamic, mutual interplay between structure and function in the cell. (shrink)

Recent double-slit type neutron experiments (1) and their theoretical implications (2) suggest that, since one can tell through which slit the individual neutrons travel, coherent wave packets remain nonlocally coupled (with particles one by one), even in the case of wide spatial separation. Following de Broglie's initial proposal, (3) this property can be derived from the existence of the persisting action of real superluminal physical phase waves considered as building blocks of the real subluminal wave field packets which surround (...) individual particle paths in the Einstein-de Broglie-Bohm interpretation of quantum mechanics. (shrink)

Attempts to ‘naturalize’ phenomenology challenge both traditional phenomenology and traditional approaches to cognitive science. They challenge Edmund Husserl’s rejection of naturalism and his attempt to establish phenomenology as a foundational transcendental discipline, and they challenge efforts to explain cognition through mainstream science. While appearing to be a retreat from the bold claims made for phenomenology, it is really its triumph. Naturalized phenomenology is spearheading a successful challenge to the heritage of Cartesian dualism. This converges with the reaction against Cartesian thought (...) within science itself. Descartes divided the universe between res cogitans, thinking substances, and res extensa, the mechanical world. The latter won with Newton and we have, in most of objective science since, literally lost our mind, hence our humanity. Despite Darwin, biologists remain children of Newton, and dream of a grand theory that is epistemologically complete and would allow lawful entailment of the evolution of the biosphere. This dream is no longer tenable. We now have to recognize that science and scientists are within and part of the world we are striving to comprehend, as proponents of endophysics have argued, and that physics, biology and mathematics have to be reconceived accordingly. Interpreting quantum mechanics from this perspective is shown to both illuminate conscious experience and reveal new paths for its further development. In biology we must now justify the use of the word “function”. As we shall see, we cannot prestate the ever new biological functions that arise and constitute the very phase space of evolution. Hence, we cannot mathematize the detailed becoming of the biosphere, nor write differential equations for functional variables we do not know ahead of time, nor integrate those equations, so no laws “entail” evolution. The dream of a grand theory fails. In place of entailing laws, a post-entailing law explanatory framework is proposed in which Actuals arise in evolution that constitute new boundary conditions that are enabling constraints that create new, typically unprestatable, Adjacent Possible opportunities for further evolution, in which new Actuals arise, in a persistent becoming. Evolution flows into a typically unprestatable succession of Adjacent Possibles. Given the concept of function, the concept of functional closure of an organism making a living in its world, becomes central. Implications for patterns in evolution include historical reconstruction, and statistical laws such as the distribution of extinction events, or species per genus, and the use of formal cause, not efficient cause, laws. (shrink)

What if gravity satisfied the Klein-Gordon equation? Both particle physics from the 1920s-30s and the 1890s Neumann-Seeliger modification of Newtonian gravity with exponential decay suggest considering a "graviton mass term" for gravity, which is _algebraic_ in the potential. Unlike Nordström's "massless" theory, massive scalar gravity is strictly special relativistic in the sense of being invariant under the Poincaré group but not the 15-parameter Bateman-Cunningham conformal group. It therefore exhibits the whole of Minkowski space-time structure, albeit only indirectly concerning volumes. (...) Massive scalar gravity is plausible in terms of relativistic field theory, while violating most interesting versions of Einstein's principles of general covariance, general relativity, equivalence, and Mach. Geometry is a poor guide to understanding massive scalar gravity: matter sees a conformally flat metric due to universal coupling, but gravity also sees the rest of the flat metric in the mass term. What is the 'true' geometry, one might wonder, in line with Poincaré's modal conventionality argument? Infinitely many theories exhibit this bimetric 'geometry,' all with the total stress-energy's trace as source; thus geometry does not explain the field equations. The irrelevance of the Ehlers-Pirani-Schild construction to a critique of conventionalism becomes evident when multi-geometry theories are contemplated. Much as Seeliger envisaged, the smooth massless limit indicates underdetermination of theories by data between massless and massive scalar gravities---indeed an unconceived alternative. At least one version easily could have been developed before General Relativity; it then would have motivated thinking of Einstein's equations along the lines of Einstein's newly re-appreciated "physical strategy" and particle physics and would have suggested a rivalry from massive spin 2 variants of General Relativity. The Putnam-Grünbaum debate on conventionality is revisited with an emphasis on the broad modal scope of conventionalist views. Massive scalar gravity thus contributes to a historically plausible rational reconstruction of much of 20th-21st century space-time philosophy in the light of particle physics. An appendix reconsiders the Malament-Weatherall-Manchak conformal restriction of conventionality and constructs the 'universal force' influencing the causal structure. Subsequent works will discuss how massive gravity could have provided a template for a more Kant-friendly space-time theory that would have blocked Moritz Schlick's supposed refutation of synthetic _a priori_ knowledge, and how Einstein's false analogy between the Neumann-Seeliger-Einstein modification of Newtonian gravity and the cosmological constant \Lambda generated lasting confusion that obscured massive gravity as a conceptual possibility. (shrink)

In his logical papers, Leo Esakia studied corresponding ordered topological spaces and order-preserving mappings. Similar spaces and mappings appear in many other application areas such the analysis of causality in space-time. It is known that under reasonable conditions, both the topology and the original order relation $${\preccurlyeq}$$ can be uniquely reconstructed if we know the “interior” $${\prec}$$ of the order relation. It is also known that in some cases, we can uniquely reconstruct $${\prec}$$ (and hence, topology) from $${\preccurlyeq}$$. In (...) this paper, we show that, in general, under reasonable conditions, the open order $${\prec}$$ (and hence, the corresponding topology) can be uniquely determined from its closure $${\preccurlyeq}$$. (shrink)

Psychophysical experiments have demonstrated large and highly systematic perceptual distortions of tactile space. Such a space can be referred to our experience of the spatial organisation of objects, at representational level, through touch, in analogy with the familiar concept of visual space. We investigated the neural basis of tactile space by analysing activity patterns induced by tactile stimulation of nine points on a 3 × 3 square grid on the hand dorsum using functional magnetic resonance imaging. (...) We used a searchlight approach within pre-defined regions of interests to compute the pairwise Euclidean distances between the activity patterns elicited by tactile stimulation. Then, we used multidimensional scaling to reconstruct tactile space at the neural level and compare it with skin space at the perceptual level. Our reconstructions of the shape of skin space in contralateral primary somatosensory and motor cortices reveal that it is distorted in a way that matches the perceptual shape of skin space. This suggests that early sensorimotor areas critically contribute to the distorted internal representation of tactile space on the hand dorsum. (shrink)