Results for 'mathematical biology'

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  1. Mathematical biology and the existence of biological laws.Mauro Dorato - 2012 - In D. Dieks, S. Hartmann, T. Uebel & M. Weber (eds.), Probabilities, Laws and Structure. Springer.
    An influential position in the philosophy of biology claims that there are no biological laws, since any apparently biological generalization is either too accidental, fact-like or contingent to be named a law, or is simply reducible to physical laws that regulate electrical and chemical interactions taking place between merely physical systems. In the following I will stress a neglected aspect of the debate that emerges directly from the growing importance of mathematical models of biological phenomena. My main aim (...)
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  2.  30
    Recent mathematical-biological studies on communication.George Karreman - 1955 - Synthese 9 (1):255 - 261.
  3. Recent Mathematical-Biological Studies on Excitation.George Karreman - 1953 - Synthese 9 (3/5):248.
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  4.  29
    The mathematical biology of physiological excitation.George Karreman - 1955 - Synthese 9 (1):248 - 251.
  5. The Mathematical Biology of Physiological Excitation.George Karreman - 1953 - Synthese 9 (3):248-251.
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  6.  18
    On the role of mathematical biology in contemporary historiography.Alonso Pena - 1999 - History and Theory 38 (4):101–120.
    This essay proposes that mathematical biology can be used as a fruitful exemplar for the introduction of scientific principles to history. After reviewing the antecedents of the application of mathematics to biology, in particular evolutionary biology, I describe in detail a mathematical model of cultural diffusion based on an analogy with population genetics. Subsequently, as a case study, this model is used to investigate the dynamics of the early modern European witch-crazes in Bavaria, England, Hungary (...)
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  7.  8
    Advances and Applications of Mathematical Biology.Nicolas Rashevsky - 1941 - Philosophy of Science 8 (1):133-134.
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  8.  16
    Advances and Applications of Mathematical Biology. Nicolas Rashevsky.John M. Reiner - 1941 - Philosophy of Science 8 (1):133-134.
  9.  9
    Nonlinear dynamics, mathematical biology, and social science.Philip W. Anderson - 1997 - Complexity 3 (2):50-51.
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  10.  76
    On the ehresmann–vanbremeersch theory and mathematical biology.Paul C. Kainen - 2009 - Axiomathes 19 (3):225-244.
    Category theory has been proposed as the ultimate algebraic model for biology. We review the Ehresmann–Vanbremeersch theory in the context of other mathematical approaches.
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  11.  4
    Mathematical Grammar of Biology.Michel Eduardo Beleza Yamagishi - 2017 - Cham: Imprint: Springer.
    This seminal, multidisciplinary book shows how mathematics can be used to study the first principles of DNA. Most importantly, it enriches the so-called "Chargaff's grammar of biology" by providing the conceptual theoretical framework necessary to generalize Chargaff's rules. Starting with a simple example of DNA mathematical modeling where human nucleotide frequencies are associated to the Fibonacci sequence and the Golden Ratio through an optimization problem, its breakthrough is showing that the reverse, complement and reverse-complement operators defined over oligonucleotides (...)
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  12.  8
    Revisiting Leonardo on Muscles: Intimations of Mathematical Biology and Biomechanics.Martin Kemp - 2023 - Biological Theory 18 (1):7-19.
    Leonardo da Vinci’s extensive drawings and notes devoted to anatomy do not arise in a medical context. He does not engage with surgery or “physic.” Rather, his aim is to reveal what he understood to be the divine engineering of God’s greatest creation. His earliest anatomical drawings map the conduits for the “spirits” at a deep level not practiced by other artists interested in the human body. The first set of drawings he produced in 1489 describes skulls with brilliant draftsmanship. (...)
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  13. Systems biology and the integration of mechanistic explanation and mathematical explanation.Ingo Brigandt - 2013 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 44 (4):477-492.
    The paper discusses how systems biology is working toward complex accounts that integrate explanation in terms of mechanisms and explanation by mathematical models—which some philosophers have viewed as rival models of explanation. Systems biology is an integrative approach, and it strongly relies on mathematical modeling. Philosophical accounts of mechanisms capture integrative in the sense of multilevel and multifield explanations, yet accounts of mechanistic explanation have failed to address how a mathematical model could contribute to such (...)
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  14. The Mathematical Theory of Categories in Biology and the Concept of Natural Equivalence in Robert Rosen.Franck Varenne - 2013 - Revue d'Histoire des Sciences 66 (1):167-197.
    The aim of this paper is to describe and analyze the epistemological justification of a proposal initially made by the biomathematician Robert Rosen in 1958. In this theoretical proposal, Rosen suggests using the mathematical concept of “category” and the correlative concept of “natural equivalence” in mathematical modeling applied to living beings. Our questions are the following: According to Rosen, to what extent does the mathematical notion of category give access to more “natural” formalisms in the modeling of (...)
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  15.  72
    Mathematical models of biological patterns: Lessons from Hamilton’s selfish herd.Christopher Pincock - 2012 - Biology and Philosophy 27 (4):481-496.
    Mathematical models of biological patterns are central to contemporary biology. This paper aims to consider what these models contribute to biology through the detailed consideration of an important case: Hamilton’s selfish herd. While highly abstract and idealized, Hamilton’s models have generated an extensive amount of research and have arguably led to an accurate understanding of an important factor in the evolution of gregarious behaviors like herding and flocking. I propose an account of what these models are able (...)
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  16. Mathematical Explanations in Evolutionary Biology or Naturalism? A Challenge for the Statisticalist.Fabio Sterpetti - 2021 - Foundations of Science 27 (3):1073-1105.
    This article presents a challenge that those philosophers who deny the causal interpretation of explanations provided by population genetics might have to address. Indeed, some philosophers, known as statisticalists, claim that the concept of natural selection is statistical in character and cannot be construed in causal terms. On the contrary, other philosophers, known as causalists, argue against the statistical view and support the causal interpretation of natural selection. The problem I am concerned with here arises for the statisticalists because the (...)
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  17. Mathematical Modeling in Biology: Philosophy and Pragmatics.Rasmus Grønfeldt Winther - 2012 - Frontiers in Plant Evolution and Development 2012:1-3.
    Philosophy can shed light on mathematical modeling and the juxtaposition of modeling and empirical data. This paper explores three philosophical traditions of the structure of scientific theory—Syntactic, Semantic, and Pragmatic—to show that each illuminates mathematical modeling. The Pragmatic View identifies four critical functions of mathematical modeling: (1) unification of both models and data, (2) model fitting to data, (3) mechanism identification accounting for observation, and (4) prediction of future observations. Such facets are explored using a recent exchange (...)
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  18.  71
    Mathematical Explanation and the Biological Optimality Fallacy.Samantha Wakil & James Justus - 2017 - Philosophy of Science 84 (5):916-930.
    Pure mathematics can play an indispensable role explaining empirical phenomena if recent accounts of insect evolution are correct. In particular, the prime life cycles of cicadas and the geometric structure of honeycombs are taken to undergird an inference to the best explanation about mathematical entities. Neither example supports this inference or the mathematical realism it is intended to establish. Both incorrectly assume that facts about mathematical optimality drove selection for the respective traits and explain why they exist. (...)
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  19. Mathematization in Synthetic Biology: Analogies, Templates, and Fictions.Andrea Loettgers & Tarja Knuuttila - 2017 - In Martin Carrier & Johannes Lenhard (eds.), Mathematics as a Tool: Tracing New Roles of Mathematics in the Sciences. Springer Verlag.
    In his famous article “The Unreasonable Effectiveness of Mathematics in the Natural Sciences” Eugen Wigner argues for a unique tie between mathematics and physics, invoking even religious language: “The miracle of the appropriateness of the language of mathematics for the formulation of the laws of physics is a wonderful gift which we neither understand nor deserve”. The possible existence of such a unique match between mathematics and physics has been extensively discussed by philosophers and historians of mathematics. Whatever the merits (...)
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  20. Mathematical Modeling of Biological and Social Evolutionary Macrotrends.Leonid Grinin, Alexander V. Markov & Andrey V. Korotayev - 2014 - In History & Mathematics: Trends and Cycles. Volgograd,Russia: Uchitel Publishing House. pp. 9-48.
    In the first part of this article we survey general similarities and differences between biological and social macroevolution. In the second (and main) part, we consider a concrete mathematical model capable of describing important features of both biological and social macroevolution. In mathematical models of historical macrodynamics, a hyperbolic pattern of world population growth arises from non-linear, second-order positive feedback between demographic growth and technological development. Based on diverse paleontological data and an analogy with macrosociological models, we suggest (...)
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  21.  9
    Mathematics in the biological sciences.Paul Thompson - 1992 - International Studies in the Philosophy of Science 6 (3):241-248.
    Although mathematical descriptions of the dynamics of system are widely employed in the physical sciences, they are employed infrequently in the biological sciences. The explanation for this usually appeals to the complexity of biological systems. I contend that quite the opposite is true and that such descriptions, in fact, enable complexity to be tamed. Moreover, in those areas in which mathematical descriptions have been used in the biological sciences, they provide a powerful vehicle for expanding our understanding of (...)
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  22.  64
    The Biological Basis of Mathematical Beauty.Semir Zeki, Oliver Y. Chén & John Paul Romaya - 2018 - Frontiers in Human Neuroscience 12.
  23.  13
    Mathematics in the biological sciences.Not By Me - 1992 - International Studies in the Philosophy of Science 6 (3):241 – 248.
    Although mathematical descriptions of the dynamics of system are widely employed in the physical sciences, they are employed infrequently in the biological sciences. The explanation for this usually appeals to the complexity of biological systems. I contend that quite the opposite is true and that such descriptions, in fact, enable complexity to be tamed. Moreover, in those areas in which mathematical descriptions have been used in the biological sciences, they provide a powerful vehicle for expanding our understanding of (...)
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  24.  20
    Mathematics and Measurements for High-throughput Quantitative Biology.Harald Martens & Achim Kohler - 2009 - Biological Theory 4 (1):29-43.
    Bioscientists generate far more data than their minds can handle, and this trend is likely to continue. With the aid of a small set of versatile tools for mathematical modeling and statistical assessment, bioscientists can explore their real-world systems without experiencing data overflow. This article outlines an approach for combining modern high-throughput, low-cost, but non-selective biospectroscopy measurements with soft, multivariate biochemometrics data modeling to overview complex systems, test hypotheses, and making new discoveries. From preliminary, broad hypotheses and goals, many (...)
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  25. From biology to mathematics.J. H. Woodger - 1952 - British Journal for the Philosophy of Science 3 (9):1-21.
  26. Marriages of Mathematics and Physics: A Challenge for Biology.Arezoo Islami & Giuseppe Longo - 2017 - Progress in Biophysics and Molecular Biology 131:179-192.
    The human attempts to access, measure and organize physical phenomena have led to a manifold construction of mathematical and physical spaces. We will survey the evolution of geometries from Euclid to the Algebraic Geometry of the 20th century. The role of Persian/Arabic Algebra in this transition and its Western symbolic development is emphasized. In this relation, we will also discuss changes in the ontological attitudes toward mathematics and its applications. Historically, the encounter of geometric and algebraic perspectives enriched the (...)
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  27.  8
    From Biology to Mathematics.J. H. Woodger - 1974 - Journal of Symbolic Logic 39 (2):353-354.
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  28.  16
    Mathematics and the Biological Phenomena.Giuseppe Longo - 2000 - Aquinas 43 (2):331-354.
    The first part of this paper highlights some key aspects of the differences in the use of mathematical tools in physics and in biology. Scientific knowledge is viewed as a network of interactions, some than as a hierarchically organized structure where mathematics would display the essence of phenomena. The concept of "unity" in the biological phenomenon is then discussed. In the second part, a foundational issue in mathematics is revisited, following recent perspective in the physiology of action. The (...)
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  29. The Mathematics of Sex: How Biology and Society Conspire to Limit Talented Women and Girls.[author unknown] - 2010
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  30.  22
    Mathematical figments, biological facts: Population ecology in the thirties.Sharon E. Kingsland - 1986 - Journal of the History of Biology 19 (2):235-256.
  31.  74
    The molecular and mathematical basis of Waddington's epigenetic landscape: A framework for post‐Darwinian biology?Sui Huang - 2012 - Bioessays 34 (2):149-157.
    The Neo‐Darwinian concept of natural selection is plausible when one assumes a straightforward causation of phenotype by genotype. However, such simple 1:1 mapping must now give place to the modern concepts of gene regulatory networks and gene expression noise. Both can, in the absence of genetic mutations, jointly generate a diversity of inheritable randomly occupied phenotypic states that could also serve as a substrate for natural selection. This form of epigenetic dynamics challenges Neo‐Darwinism. It needs to incorporate the non‐linear, stochastic (...)
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  32. The normative structure of mathematization in systematic biology.Beckett Sterner & Scott Lidgard - 2014 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 46 (1):44-54.
    We argue that the mathematization of science should be understood as a normative activity of advocating for a particular methodology with its own criteria for evaluating good research. As a case study, we examine the mathematization of taxonomic classification in systematic biology. We show how mathematization is a normative activity by contrasting its distinctive features in numerical taxonomy in the 1960s with an earlier reform advocated by Ernst Mayr starting in the 1940s. Both Mayr and the numerical taxonomists sought (...)
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  33.  50
    The biological bases of mathematical competences: a challenge for AGI.Aaron Sloman - unknown
    Evolution produced many species whose members are pre-programmed with almost all the competences and knowledge they will ever need. Others appear to start with very little and learn what they need, but appearances can deceive. I conjecture that evolution produced powerful innate meta-knowledge about a class of environments containing 3- D structures and processes involving materials of many kinds. In humans and several other species these innate learning mechanisms seem initially to use exploration techniques to capture a variety of useful (...)
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  34.  39
    A mathematical framework for biological color vision.Laurence T. Maloney - 1992 - Behavioral and Brain Sciences 15 (1):45-46.
  35. Physico-Mathematical Methods in Biological and Social Sciences.N. Rashevsky - 1936 - Erkenntnis 6 (1):357-367.
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  36.  12
    Mathematical Models in Biology.Jacques Ricard & Käty Ricard - 1997 - In Evandro Agazzi & György Darvas (eds.), Philosophy of Mathematics Today. Kluwer Academic Publishers. pp. 299--304.
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  37.  16
    Mathematical Modeling and Dynamic Analysis of Complex Biological Systems.Alain Vande Wouwer, Philippe Bogaerts, Jan Van Impe & Alejandro Vargas - 2019 - Complexity 2019:1-2.
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  38.  51
    Quantum mathematical cognition requires quantum brain biology: The “Orch OR” theory.Stuart R. Hameroff - 2013 - Behavioral and Brain Sciences 36 (3):287-290.
    The theory suggests that quantum computations in brain neuronal dendritic-somatic microtubules regulate axonal firings to control conscious behavior. Within microtubule subunit proteins, collective dipoles in arrays of contiguous amino acid electron clouds enable suitable for topological dipole able to physically represent cognitive values, for example, those portrayed by Pothos & Busemeyer (P&B) as projections in abstract Hilbert space.
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  39.  24
    Mathematical models, explanation, laws, and evolutionary biology.Mehmet Elgin - 2010 - History and Philosophy of the Life Sciences 32 (4).
  40.  5
    A hapless mathematical contribution to biology: Chromosome inversions in Drosophila, 1937–1941.Eric Tannier - 2022 - History and Philosophy of the Life Sciences 44 (3):1-22.
    This is the story, told in the light of a new analysis of historical data, of a mathematical biology problem that was explored in the 1930s in Thomas Morgan’s laboratory at the California Institute of Technology. It is one of the early developments of evolutionary genetics and quantitative phylogeny, and deals with the identification and counting of chromosomal inversions in Drosophila species from comparisons of genetic maps. A re-analysis of the data produced in the 1930s using current mathematics (...)
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  41.  42
    A mathematical model of the equilibrium distribution of chemical complexes and the biological effects of chemical binding.L. D. Homer - 1967 - Acta Biotheoretica 17 (3):125-138.
    A general equation is derived describing the concentration of all possible complexes of a central molecule with a set of ligands bound to the central molecule. This deduction allows the reaction rate constants for the binding of a given molecule to the central molecule to depend on the species of molecules already bound and the location of the molecules already bound. The model thus allows for structural alteration of the central molecule by binding. Functions describing the concentration dependence of any (...)
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  42.  29
    Defining ecology: Ecological theories, mathematical models, and applied biology in the 1960s and 1970s.Paolo Palladino - 1991 - Journal of the History of Biology 24 (2):223 - 243.
    Ever since the early decades of this century, there have emerged a number of competing schools of ecology that have attempted to weave the concepts underlying natural resource management and natural-historical traditions into a formal theoretical framework. It was widely believed that the discovery of the fundamental mechanisms underlying ecological phenomena would allow ecologists to articulate mathematically rigorous statements whose validity was not predicated on contingent factors. The formulation of such statements would elevate ecology to the standing of a rigorous (...)
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  43. Generation of Biological Patterns and Form: Some Physical, Mathematical and Logical Aspects.Alfred Gierer - 1981 - Progress in Biophysics and Molecular Biology 37 (1):1-48.
    While many different mechanisms contribute to the generation of spatial order in biological development, the formation of morphogenetic fields which in turn direct cell responses giving rise to pattern and form are of major importance and essential for embryogenesis and regeneration. Most likely the fields represent concentration patterns of substances produced by molecular kinetics. Short range autocatalytic activation in conjunction with longer range “lateral” inhibition or depletion effects is capable of generating such patterns (Gierer and Meinhardt, 1972). Non-linear reactions are (...)
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  44.  42
    Epigenetics meets mathematics: Towards a quantitative understanding of chromatin biology.Philipp A. Steffen, João P. Fonseca & Leonie Ringrose - 2012 - Bioessays 34 (10):901-913.
    How fast? How strong? How many? So what? Why do numbers matter in biology? Chromatin binding proteins are forever in motion, exchanging rapidly between bound and free pools. How do regulatory systems whose components are in constant flux ensure stability and flexibility? This review explores the application of quantitative and mathematical approaches to mechanisms of epigenetic regulation. We discuss methods for measuring kinetic parameters and protein quantities in living cells, and explore the insights that have been gained by (...)
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  45.  12
    Vagueness in the exact sciences: impacts in mathematics, physics, chemistry, biology, medicine, engineering and computing.Apostolos Syropoulos & Basil K. Papadopoulos (eds.) - 2021 - Boston: De Gruyter.
    The book starts with the assumption that vagueness is a fundamental property of this world. From a philosophical account of vagueness via the presentation of alternative mathematics of vagueness, the subsequent chapters explore how vagueness manifests itself in the various exact sciences: physics, chemistry, biology, medicine, computer science, and engineering.
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  46.  11
    The applicability of mathematics in computational systems biology and its experimental relations.Miles MacLeod - 2021 - European Journal for Philosophy of Science 11 (3):1-21.
    In 1966 Richard Levins argued that applications of mathematics to population biology faced various constraints which forced mathematical modelers to trade-off at least one of realism, precision, or generality in their approach. Much traditional mathematical modeling in biology has prioritized generality and precision in the place of realism through strategies of idealization and simplification. This has at times created tensions with experimental biologists. The past 20 years however has seen an explosion in mathematical modeling of (...)
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  47. On Similarities between Biological and Social Evolutionary Mechanisms: Mathematical Modeling.Leonid Grinin - 2013 - Cliodynamics: The Journal of Theoretical and Mathematical History 4:185-228.
    In the first part of this article we survey general similarities and differences between biological and social macroevolution. In the second (and main) part, we consider a concrete mathematical model capable of describing important features of both biological and social macroevolution. In mathematical models of historical macrodynamics, a hyperbolic pattern of world population growth arises from non-linear, second-order positive feedback between demographic growth and technological development. This is more or less identical with the working of the collective learning (...)
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  48.  6
    Philosophy of Biology, Psychology, and Neuroscience-Conceptual Foundations of Field Theories in Physics-Mathematics and Reality: Two Notions of Spacetime in the Analytic and Constructionist Views.Andrew Wayne & Sunny Y. Auyang - 2000 - Philosophy of Science 67 (3):S482-S494.
    This paper presents two interpretations of the fiber bundle fonnalism that is applicable to all gauge field theories. The constructionist interpretation yields a substantival spacetime. The analytic interpretation yields a structural spacetime, a third option besides the familiar substantivalism and relationalism. That the same mathematical fonnalism can be derived in two different ways leading to two different ontological interpretations reveals the inadequacy of pure fonnal arguments.
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  49.  11
    Corrigendum: The Biological Basis of Mathematical Beauty.Semir Zeki, Oliver Y. Chén & John Paul Romaya - 2019 - Frontiers in Human Neuroscience 13.
  50.  50
    Game Theory as Mathematics for Biology.Don Ross - 2007 - Biological Theory 2 (1):104-107.
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