Results for 'Molecule'

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  1.  30
    Do molecules have structure in isolation? How models can provide the answer.Vanessa Seifert - 2022 - In Olimpia Lombardi, Juan Camilo Martínez & Sebastian Fortin (eds.), Philosophical Perspectives on Quantum Chemistry. Springer Cham. pp. 125–143.
    I argue that molecules may not have structure in isolation. I support this by investigating how quantum models identify structure for isolated molecules. Specifically, I distinguish between two sets of models: those that identify structure in isolation and those that do not. The former identify structure because they presuppose structural information about the target system via the Born- Oppenheimer approximation. However, it is an idealisation to assume structure in isolation because there is no empirical evidence of this. In fact, whenever (...)
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  2. Atoms, molecules, and Pauling, Linus. Goodstein Jr - 1984 - Social Research: An International Quarterly 51 (3):691-708.
     
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  3.  34
    How Molecules Became Signs.Terrence W. Deacon - forthcoming - Biosemiotics:1-23.
    To explore how molecules became signs I will ask: “What sort of process is necessary and sufficient to treat a molecule as a sign?” This requires focusing on the interpreting system and its interpretive competence. To avoid assuming any properties that need to be explained I develop what I consider to be a simplest possible molecular model system which only assumes known physics and chemistry but nevertheless exemplifies the interpretive properties of interest. Three progressively more complex variants of this (...)
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  4.  88
    From molecules to dynamic biological communities.Daniel McDonald, Yoshiki Vázquez-Baeza, William A. Walters, J. Gregory Caporaso & Rob Knight - 2013 - Biology and Philosophy 28 (2):241-259.
    Microbial ecology is flourishing, and in the process, is making contributions to how the ecology and biology of large organisms is understood. Ongoing advances in sequencing technology and computational methods have enabled the collection and analysis of vast amounts of molecular data from diverse biological communities. While early studies focused on cataloguing microbial biodiversity in environments ranging from simple marine ecosystems to complex soil ecologies, more recent research is concerned with community functions and their dynamics over time. Models and concepts (...)
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  5.  42
    Moral Molecules: Morality as a Combinatorial System.Oliver Scott Curry, Mark Alfano, Mark J. Brandt & Christine Pelican - 2022 - Review of Philosophy and Psychology 13 (4):1039-1058.
    What is morality? How many moral values are there? And what are they? According to the theory of morality-as-cooperation, morality is a collection of biological and cultural solutions to the problems of cooperation recurrent in human social life. This theory predicts that there will be as many different types of morality as there are different types of cooperation. Previous research, drawing on evolutionary game theory, has identified at least seven different types of cooperation, and used them to explain seven different (...)
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  6.  32
    From molecule to metaphor: a neural theory of language.Jerome A. Feldman - 2006 - Cambridge, Mass.: MIT Press.
    A theory that treats language not as an abstract symbol system but as a function of our brains and experience, integrating recent findings from biology, ...
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  7. How molecules matter to mental computation.Paul Thagard - 2002 - Philosophy of Science 69 (3):497-518.
    Almost all computational models of the mind and brain ignore details about neurotransmitters, hormones, and other molecules. The neglect of neurochemistry in cognitive science would be appropriate if the computational properties of brains relevant to explaining mental functioning were in fact electrical rather than chemical. But there is considerable evidence that chemical complexity really does matter to brain computation, including the role of proteins in intracellular computation, the operations of synapses and neurotransmitters, and the effects of neuromodulators such as hormones. (...)
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  8. Molecules and mereology.Rom Harré & Jean-Pierre Llored - 2013 - Foundations of Chemistry 15 (2):127-144.
    This paper widens the scope of our previous paper (Harré and Llored in Found Chem 13:63–76, 2011) by scrutinizing how whole/parts relations are involved in the study of molecules. In doing so, we point out two mereological fallacies which endanger both philosophical and chemical inferences. We also further explore how the concept of affordance is related to our mereological investigation. We then refer to quantum chemistry in order to pave the way for a new mereological approach for chemistry.
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  9.  9
    Single‐molecule pull‐down (SiMPull) for new‐age biochemistry.Vasudha Aggarwal & Taekjip Ha - 2014 - Bioessays 36 (11):1109-1119.
    Macromolecular interactions play a central role in many biological processes. Protein‐protein interactions have mostly been studied by co‐immunoprecipitation, which cannot provide quantitative information on all possible molecular connections present in the complex. We will review a new approach that allows cellular proteins and biomolecular complexes to be studied in real‐time at the single‐molecule level. This technique is called single‐molecule pull‐down (SiMPull), because it integrates principles of conventional immunoprecipitation with the powerful single‐molecule fluorescence microscopy. SiMPull is used to (...)
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  10. From molecules to systems: the importance of looking both ways.Alexander Powell & John Dupré - 2009 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 40 (1):54-64.
    Although molecular biology has meant different things at different times, the term is often associated with a tendency to view cellular causation as conforming to simple linear schemas in which macro-scale effects are specified by micro-scale structures. The early achievements of molecular biologists were important for the formation of such an outlook, one to which the discovery of recombinant DNA techniques, and a number of other findings, gave new life even after the complexity of genotype–phenotype
    relations had become apparent. Against this (...)
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  11.  6
    Molecules and minds: essays on biology and the social order.Steven Peter Russell Rose - 1987 - Philadelphia: Open University Press.
  12.  39
    Endowed molecules and emergent organization : the Maupertuis-Diderot debate.Charles T. Wolfe - 2010 - In Tobias Cheung (ed.), Early Science and Medicine. Brill. pp. 38-65.
    At the very beginning of L’Homme-Machine, La Mettrie claims that Leibnizians with their monads have “rather spiritualized matter than materialized the soul”; a few years later Pierre-Louis Moreau de Maupertuis, President of the Berlin Academy of Sciences and natural philosopher with a strong interest in the modes of transmission of ‘genetic’ information, conceived of living minima which he termed molecules, “endowed with desire, memory and intelligence,” in his Système de la nature ou Essai sur les corps organisés. This text first (...)
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  13.  24
    Of molecules and men.Francis Crick - 1966 - Seattle,: University of Washington Press.
    "In his third lecture Crick anticipates events and trends that have in fact come to pass in the past four decades, including the increasing use of computer technology and robotics in mind-brain research, explorations into right-side versus left-side uses of the brain, and controversies surrounding the existence of the soul."--BOOK JACKET.
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  14.  26
    Endowed Molecules and Emergent Organization: The Maupertuis-Diderot Debate.Charles T. Wolfe - 2010 - Early Science and Medicine 15 (1-2):38-65.
    In his Système de la nature ou Essai sur les corps organisés, Pierre-Louis Moreau de Maupertuis, President of the Berlin Academy of Sciences and a natural philosopher with a strong interest in the modes of transmission of 'genetic' information, described living minima which he termed molecules, “endowed with desire, memory and intelligence.” Now, Maupertuis was a Leibnizian of sorts; his molecules possessed higher-level, 'mental' properties, recalling La Mettrie's statement in L'Homme-Machine, that Leibnizians have “rather spiritualized matter than materialized the soul.” (...)
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  15. Molecules with very weak bonds: The edge of covalency.Jerome A. Berson - 2008 - Philosophy of Science 75 (5):947-957.
    Because most chemical reactions, by definition, cannot avoid breaking of bonds, weakly bonded species exist fleetingly in almost every chemical change. Historically, chemical quantum mechanics was aimed at explaining the nature of strong bonds. The theory involved a number of approximations to the full solution of the Schrödinger equation. The study of non‐Kekulé molecules provides an opportunity to test whether modern quantum chemical computations are competent to deal with the nature of molecules with very weak bonds. †To contact the author, (...)
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  16.  38
    Molecules Made Biological.C. Kenneth Waters - 2000 - Revue Internationale de Philosophie 54 (214(4)):539--564.
  17.  3
    Single‐molecule approaches reveal outer membrane protein biogenesis dynamics.Anna Svirina, Neharika Chamachi & Michael Schlierf - 2022 - Bioessays 44 (12):2200149.
    Outer membrane proteins (OMPs) maintain the viability of Gram‐negative bacteria by functioning as receptors, transporters, ion channels, lipases, and porins. Folding and assembly of OMPs involves synchronized action of chaperones and multi‐protein machineries which escort the highly hydrophobic polypeptides to their target outer membrane in a folding competent state. Previous studies have identified proteins and their involvement along the OMP biogenesis pathway. Yet, the mechanisms of action and the intriguing ability of all these molecular machines to work without the typical (...)
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  18. From molecules to behavior and the clinic: Integration in chronobiology.William Bechtel - 2012 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 44 (4):493-502.
    Chronobiology, especially the study of circadian rhythms, provides a model scientific field in which philosophers can study how investigators from a variety of disciplines working at different levels of organization are each contributing to a multi-level account of the responsible mechanism. I focus on how the framework of mechanistic explanation integrates research designed to decompose the mechanism with efforts directed at recomposition that relies especially on computation models. I also examine how recently the integration has extended beyond basic research to (...)
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  19. Molecules, systems, and behavior: Another view of memory consolidation.William Bechtel - 2009 - In John Bickle (ed.), The Oxford Handbook of Philosophy and Neuroscience.
    From its genesis in the 1960s, the focus of inquiry in neuroscience has been on the cellular and molecular processes underlying neural activity. In this pursuit neuroscience has been enormously successful. Like any successful scientific inquiry, initial successes have raised new questions that inspire ongoing research. While there is still much that is not known about the molecular processes in brains, a great deal of very important knowledge has been secured, especially in the last 50 years. It has also attracted (...)
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  20.  26
    'Molecules and Monkeys': George Gaylord Simpson and the Challenge of Molecular Evolution.Jay Aronson - 2002 - History and Philosophy of the Life Sciences 24 (3/4):441 - 465.
    In this paper, I analyze George Gaylord Simpson's response to the molecularization of evolutionary biology from his unique perspective as a paleontologist. I do so by exploring his views on early attempts to reconstruct phylogenetic relationships among primates using molecular data. Particular attention is paid to Simpson's role in the evolutionary synthesis of the 1930s and 1940s, as well as his concerns about the rise of molecular biology as a powerful discipline and world-view in the 1960s. I argue that Simpson's (...)
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  21.  40
    The molecule maxim: Guidelines for an evolved enterprise culture in Hungary.Peter Zwack - 1998 - World Futures 52 (2):155-161.
    Problems arising from the transformation of Hungary from a monolithic society into a market economy are addressed. In the past, under communism, the worker was a faceless digit in a mass proletariat. He had no rights, but also no sense of obligation to society and the community. How can the business community instil in its worker a sense of their own unique individuality and role in their company and in society, a psychological awakening that will benefit not only the works (...)
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  22.  31
    From Molecules to Perception: Philosophical Investigations of Smell.Ann-Sophie Barwich & Barry C. Smith - 2022 - Philosophy Compass 17 (11):e12883.
    Theories of perception have traditionally dismissed the sense of smell as a notoriously variable and highly subjective sense, mainly because it does not easily fit into accounts of perception based on visual experience. So far, philosophical questions about the objects of olfactory perception have started by considering the nature of olfactory experience. However, there is no philosophically neutral or agreed conception of olfactory experience: it all depends on what one thinks odors are. We examine the existing philosophical methodology for addressing (...)
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  23.  61
    Bending Molecules or Bending the Rules? The Application of Theoretical Models in Fragrance Chemistry.Ann-Sophie Barwich - 2015 - Perspectives on Science 23 (4):443-465.
    What does it take for a scientific model to represent? Scientific models have received a great deal of attention in recent philosophical literature. Following Morgan and Morrison’s account of “Models as Mediators”, analysis of how models represent has changed from questioning what properties of models can be said to correlate with the world to asking how models are used to relate to an intended target-system. This turn to a practice-oriented approach of understanding models was a response to a general philosophical (...)
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  24. Moving Molecules Above the Scientific Horizon: On Perrin’s Case for Realism. [REVIEW]Stathis Psillos - 2011 - Journal for General Philosophy of Science / Zeitschrift für Allgemeine Wissenschaftstheorie 42 (2):339-363.
    This paper aims to cast light on the reasons that explain the shift of opinion—from scepticism to realism—concerning the reality of atoms and molecules in the beginning of the twentieth century, in light of Jean Perrin’s theoretical and experimental work on the Brownian movement. The story told has some rather interesting repercussions for the rationality of accepting the reality of explanatory posits. Section 2 presents the key philosophical debate concerning the role and status of explanatory hypotheses c. 1900, focusing on (...)
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  25.  22
    From molecules to behavior and the clinic: Integration in chronobiology.William Bechtel - 2013 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 44 (4):493-502.
    Chronobiology, especially the study of circadian rhythms, provides a model scientific field in which philosophers can study how investigators from a variety of disciplines working at different levels of organization are each contributing to a multi-level account of the responsible mechanism. I focus on how the framework of mechanistic explanation integrates research designed to decompose the mechanism with efforts directed at recomposition that relies especially on computation models. I also examine how recently the integration has extended beyond basic research to (...)
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  26.  81
    Atoms in molecules as non-overlapping, bounded, space-filling open quantum systems.Richard F. W. Bader & Chérif F. Matta - 2012 - Foundations of Chemistry 15 (3):253-276.
    The quantum theory of atoms in molecules (QTAIM) uses physics to define an atom and its contribution to observable properties in a given system. It does so using the electron density and its flow in a magnetic field, the current density. These are the two fields that Schrödinger said should be used to explain and understand the properties of matter. It is the purpose of this paper to show how QTAIM bridges the conceptual gulf that separates the observations of chemistry (...)
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  27.  16
    Signaling molecules in regenerating hydra.Brigitte Galliot - 1997 - Bioessays 19 (1):37-46.
    Ever since it was discovered in hydra, regeneration has remained a stimulating question for developmental biologists. Cellular approaches have revealed that, within the first few hours of apical or basal hydra regeneration, differentiation and determination of nerve cells are the primary cellular events detectable. The head and foot activators (HA, FA), neuropeptides that are released upon injury, are signaling molecules involved in these processes. In conditions where it induces cellular differentiation or determination, HA behaves as an agonist of the cyclic (...)
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  28. From molecules to phenotypes? The promise and limits of integrative biology.Massimo Pigliucci - 2003 - Basic and Applied Ecology 4:297-306.
    Is integrative biology a good idea, or even possible? There has been much interest lately in the unifica- tion of biology and the integration of traditionally separate disciplines such as molecular and develop- mental biology on one hand, and ecology and evolutionary biology on the other. In this paper I ask if and under what circumstances such integration of efforts actually makes sense. I develop by example an analogy with Aristotle’s famous four “causes” that one can investigate concerning any object (...)
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  29.  76
    Molecule-for-Molecule Duplication.Mariam Thalos - 2008 - Teorema: International Journal of Philosophy 27 (3):103-114.
    Is a molecule-for-molecule duplicate D of some entity always a perfect duplicate of it? And in particular: is D a being with consciousness if its original is? These questions summarize a certain diagnostic tool used by metaphysicians, and prominently used in service of a form of dualism that is supposed to support an autonomous science of consciousness. This essay argues that this diagnostic tool is inapt when the exercise is performed as a pure thought experiment, for the sake (...)
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  30.  5
    Molecules interact. But how strong and how much?Kathleen Weimer, Boglarka Zambo & Gergo Gogl - 2023 - Bioessays 45 (6):2300007.
    Interactomics aims to characterize all interactions formed between molecules that comprise our body. Although it emerged from quantitative biophysics, it has devolved into a predominantly qualitative field of science over the past decades. Due to technical limitations at its onset, almost all tools in interactomics are qualitative, which persists in defining the discipline. Here, we argue that interactomics needs to return to a quantitative direction because the technical achievements of the last decade have overcome the original limitations that forced its (...)
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  31. From Molecules to Networks: Adoption of Systems Approaches in Circadian Rhythm Research.William Bechtel - 2013 - In Hanne Andersen, Dennis Dieks, Wenceslao González, Thomas Uebel & Gregory Wheeler (eds.), New Challenges to Philosophy of Science. Springer Verlag. pp. 211--223.
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  32.  68
    Modeling molecules: Computational nanotechnology as a knowledge community.Ann Johnson - 2009 - Perspectives on Science 17 (2):pp. 144-173.
    I propose that a sociological and historical examination of nanotechnologists can contribute more to an understanding of nanotechnology than an ontological definition. Nanotechnology emerged from the convergent evolution of numerous "technical knowledge communities"-networks of tightly-interconnected people who operate between disciplines and individual research groups. I demonstrate this proposition by sketching the co-evolution of computational chemistry and computational nanotechnology. Computational chemistry arose in the 1950s but eventually segregated into an ab initio, basic research, physics-oriented flavor and an industry-oriented, molecular modeling and (...)
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  33.  75
    The molecules of social recognition memory: Implications for social cognition, extended mind, and neuroethics.John Bickle - 2008 - Consciousness and Cognition 17 (2):468-474.
    Social cognition, cognitive neuroscience, and neuroethics have reached a synthesis of late, but some troubling features are present. The neuroscience that currently dominates the study of social cognition is exclusively cognitive neuroscience, as contrasted with the cellular and increasingly molecular emphasis that has gripped mainstream neuroscience over the past three decades. Furthermore, the recent field of molecular and cellular cognition has begun to unravel some molecular mechanisms involved in social cognition, especially pertaining to the consolidation of memories of particular conspecific (...)
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  34.  27
    Molecules and models.J. J. Mulckhuyse - 1960 - Synthese 12 (2-3):257 - 275.
  35. The atom in a molecule as a mereological construct in chemistry.N. Sukumar - 2012 - Foundations of Chemistry 15 (3):303-309.
    In this paper I discuss some consequences and manifestations of a mereology of structured wholes in chemistry, with particular reference to the concept of atoms in molecules.
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  36. Playing with molecules.Adam Toon - 2011 - Studies in History and Philosophy of Science Part A 42 (4):580-589.
    Recent philosophy of science has seen a number of attempts to understand scientific models by looking to theories of fiction. In previous work, I have offered an account of models that draws on Kendall Walton’s ‘make-believe’ theory of art. According to this account, models function as ‘props’ in games of make-believe, like children’s dolls or toy trucks. In this paper, I assess the make-believe view through an empirical study of molecular models. I suggest that the view gains support when we (...)
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  37.  16
    Molecules of Silence: Effects of Meditation on Gene Expression and Epigenetics.Sabrina Venditti, Loredana Verdone, Anna Reale, Valerio Vetriani, Micaela Caserta & Michele Zampieri - 2020 - Frontiers in Psychology 11.
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  38.  64
    Modelling molecules: Beyond the epistemic-pragmatic dichotomy.Henk W. de Regt - unknown
    I argue that scientific explanation has a pragmatic dimension that is epistemically relevant. Philosophers with an objectivist approach to scientific explanation (e.g. Hempel, Trout) hold that the pragmatic aspects of explanation do not have any epistemic import. I argue against this view by focusing on the role of models in scientific explanation. Applying recent accounts of modelling (Cartwright, Morgan and Morrison) to a case-study of nineteenth-century physics, I analyse the pragmatic dimension of the process of model construction. I highlight the (...)
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  39.  23
    Molecules, Cells and Minds: Aspects of Bioscientific Explanation.Alexander Powell - 2009 - Dissertation, University of Exeter
    In this thesis I examine a number of topics that bear on explanation and understanding in molecular and cell biology, in order to shed new light on explanatory practice in those areas and to find novel angles from which to approach relevant philosophical debates. The topics I look at include mechanism, emergence, cellular complexity, and the informational role of the genome. I develop a perspective that stresses the intimacy of the relations between ontology and epistemology. Whether a phenomenon looks mechanistic, (...)
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  40.  59
    Of Minds and Molecules: New Philosophical Perspectives on Chemistry.Nalini Bhushan & Stuart M. Rosenfeld (eds.) - 2000 - Oxford University Press.
    Of Minds and Molecules is the first anthology devoted exclusively to work in the philosophy of chemistry. The essays, written by both chemists and philosophers, adopt distinctive philosophical perspectives on chemistry and collectively offer both a conceptualization of and a justification for this emerging field.
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  41.  67
    From molecules to mindfulness: How vertically convergent fractal time fluctuations unify cognition and emotion.C. M. Anderson - 2000 - Consciousness and Emotion 1 (2):193-226.
    Fractal time fluctuations of the spectral “1/f” form are universal in natural self-organizing systems. Neurobiology is uniquely infused with fractal fluctuations in the form of statistically self-similar clusters or bursts on all levels of description from molecular events such as protein chain fluctuations, ion channel currents and synaptic processes to the behaviors of neural ensembles or the collective behavior of Internet users. It is the thesis of this essay that the brain self-organizes via a vertical collation of these spontaneous events (...)
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  42.  12
    Atoms, Molecules, and Linus Pauling.Judith Goodstein - 1984 - Social Research: An International Quarterly 51.
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  43.  2
    La Molecule chimiqueR. Lespieau.L. Guinet - 1921 - Isis 3 (3):426-428.
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  44.  5
    Silicon, molecules, or photons.C. S. Calude & J. L. Casti - 1998 - Complexity 4 (1):13.
  45.  4
    Molecules involved in cerebellar long-term depression and mutant mice defective in it.Tomoo Hirano - 1996 - Behavioral and Brain Sciences 19 (3):456-457.
  46.  12
    Molecules and Life by Joseph S. Fruton.Frederic L. Holmes - 1975 - History of Science 13 (2):114-121.
  47.  14
    Les molécules phéromonales: éléments d'épistémologie historique.Jean-Claude Dupont - 2002 - Philosophia Scientiae 6 (1):50-59.
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  48.  8
    From Molecules to Life.Robert Engel - 1991 - In Evandro Agazzi & Alberto Cordero (eds.), Philosophy and the Origin and Evolution of the Universe. Kluwer Academic Publishers. pp. 203--218.
  49.  7
    On Molecules and Their Chemical Transformation.Ross L. Stein - 2008 - In Michel Weber (ed.), Handbook of Whiteheadian Process Thought. De Gruyter. pp. 171-178.
  50. Addiction, molecules and morality: Disease does not obviate responsibility.Peter J. Cohen - 2007 - American Journal of Bioethics 7 (1):21 – 23.
    The author comments on the article “The neurobiology of addiction: Implications for voluntary control of behavior,‘ by S. E. Hyman. The author agrees with Hyman that debate persists whether addiction is a brain disease or a moral condition. The author states that Hyman has not fully answered the question of when addicted persons are responsible for what they do. The author also suggests that addiction is a brain disease and therapy can improve the symptoms of this life-threatening syndrome. Accession Number: (...)
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