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Marcel Weber
University of Geneva
  1. Philosophy of Experimental Biology.Marcel Weber - 2004 - Cambridge University Press.
    Philosophy of Experimental Biology explores some central philosophical issues concerning scientific research in experimental biology, including genetics, biochemistry, molecular biology, developmental biology, neurobiology, and microbiology. It seeks to make sense of the explanatory strategies, concepts, ways of reasoning, approaches to discovery and problem solving, tools, models and experimental systems deployed by scientific life science researchers and also integrates developments in historical scholarship, in particular the New Experimentalism. It concludes that historical explanations of scientific change that are based on local laboratory (...)
  2. Causal Selection versus Causal Parity in Biology: Relevant Counterfactuals and Biologically Normal Interventions.Marcel Weber - forthcoming - In Brian J. Hanley & C. Kenneth Waters (eds.), Philosophical Perspectives on Causal Reasoning in Biology. Minnesota Studies in Philosophy of Science. Vol. XXI. Minneapolis: University of Minnesota Press.
    Causal selection is the task of picking out, from a field of known causally relevant factors, some factors as elements of an explanation. The Causal Parity Thesis in the philosophy of biology challenges the usual ways of making such selections among different causes operating in a developing organism. The main target of this thesis is usually gene centrism, the doctrine that genes play some special role in ontogeny, which is often described in terms of information-bearing or programming. This paper is (...)
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  3. The Central Dogma as a Thesis of Causal Specificity.Marcel Weber - 2006 - History and Philosophy of the Life Sciences 28 (4):595-610.
    I present a reconstruction of F.H.C. Crick's two 1957 hypotheses "Sequence Hypothesis" and "Central Dogma" in terms of a contemporary philosophical theory of causation. Analyzing in particular the experimental evidence that Crick cited, I argue that these hypotheses can be understood as claims about the actual difference-making cause in protein synthesis. As these hypotheses are only true if restricted to certain nucleic acids in certain organisms, I then examine the concept of causal specificity and its potential to counter claims about (...)
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  4. Causes without mechanisms: Experimental regularities, physical laws, and neuroscientific explanation.Marcel Weber - 2008 - Philosophy of Science 75 (5):995-1007.
    This article examines the role of experimental generalizations and physical laws in neuroscientific explanations, using Hodgkin and Huxley’s electrophysiological model from 1952 as a test case. I show that the fact that the model was partly fitted to experimental data did not affect its explanatory status, nor did the false mechanistic assumptions made by Hodgkin and Huxley. The model satisfies two important criteria of explanatory status: it contains invariant generalizations and it is modular (both in James Woodward’s sense). Further, I (...)
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  5. Which Kind of Causal Specificity Matters Biologically?Marcel Weber - 2017 - Philosophy of Science 84 (3):574-585.
    Griffiths et al. (2015) have proposed a quantitative measure of causal specificity and used it to assess various attempts to single out genetic causes as being causally more specific than other cellular mechanisms, for example, alternative splicing. Focusing in particular on developmental processes, they have identified a number of important challenges for this project. In this discussion note, I would like to show how these challenges can be met.
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  6. Experimental Modeling in Biology: In Vivo Representation and Stand-ins As Modeling Strategies.Marcel Weber - 2014 - Philosophy of Science 81 (5):756-769.
    Experimental modeling in biology involves the use of living organisms (not necessarily so-called "model organisms") in order to model or simulate biological processes. I argue here that experimental modeling is a bona fide form of scientific modeling that plays an epistemic role that is distinct from that of ordinary biological experiments. What distinguishes them from ordinary experiments is that they use what I call "in vivo representations" where one kind of causal process is used to stand in for a physically (...)
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  7. How objective are biological functions?Marcel Weber - 2017 - Synthese 194 (12):4741-4755.
    John Searle has argued that functions owe their existence to the value that we put into life and survival. In this paper, I will provide a critique of Searle’s argument concerning the ontology of functions. I rely on a standard analysis of functional predicates as relating not only a biological entity, an activity that constitutes the function of this entity and a type of system but also a goal state. A functional attribution without specification of such a goal state has (...)
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  8. Experiment in Biology (2018 update).Marcel Weber - 2018 - Stanford Encyclopedia of Philosophy.
  9. On the Incompatibility of Dynamical Biological Mechanisms and Causal Graphs.Marcel Weber - 2016 - Philosophy of Science 83 (5):959-971.
    I examine to what extent accounts of mechanisms based on formal interventionist theories of causality can adequately represent biological mechanisms with complex dynamics. Using a differential equation model for a circadian clock mechanism as an example, I first show that there exists an iterative solution that can be interpreted as a structural causal model. Thus, in principle, it is possible to integrate causal difference-making information with dynamical information. However, the differential equation model itself lacks the right modularity properties for a (...)
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  10. The Present Situation in the Philosophy of Science.Thomas Uebel, Stephan Hartmann, Wenceslao Gonzalez, Marcel Weber, Dennis Dieks & Friedrich Stadler (eds.) - 2010 - Springer.
    This volume is a serious attempt to open up the subject of European philosophy of science to real thought, and provide the structural basis for the ...
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  11. The Crux of Crucial Experiments: Duhem's Problems and Inference to the Best Explanation.Marcel Weber - 2009 - British Journal for the Philosophy of Science 60 (1):19-49.
    Going back at least to Duhem, there is a tradition of thinking that crucial experiments are impossible in science. I analyse Duhem's arguments and show that they are based on the excessively strong assumption that only deductive reasoning is permissible in experimental science. This opens the possibility that some principle of inductive inference could provide a sufficient reason for preferring one among a group of hypotheses on the basis of an appropriately controlled experiment. To be sure, there are analogues to (...)
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  12. Coherent Causal Control: A New Distinction within Causation.Marcel Weber - 2022 - European Journal for Philosophy of Science 12 (4):69.
    The recent literature on causality has seen the introduction of several distinctions within causality, which are thought to be important for understanding the widespread scientific practice of focusing causal explanations on a subset of the factors that are causally relevant for a phenomenon. Concepts used to draw such distinctions include, among others, stability, specificity, proportionality, or actual-difference making. In this contribution, I propose a new distinction that picks out an explanatorily salient class of causes in biological systems. Some select causes (...)
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  13.  15
    Philosophy of Experimental Biology. Cambridge Studies in Philosophy and Biology.Marcel Weber - 2007 - Philosophical Review 116 (1):139-141.
  14. Thought Experiments in Biology.Guillaume Schlaepfer & Marcel Weber - 2018 - In Michael T. Stuart, Yiftach Fehige & James Robert Brown (eds.), The Routledge Companion to Thought Experiments. London: Routledge. pp. 243-256.
    Unlike in physics, the category of thought experiment is not very common in biology. At least there are no classic examples that are as important and as well-known as the most famous thought experiments in physics, such as Galileo’s, Maxwell’s or Einstein’s. The reasons for this are far from obvious; maybe it has to do with the fact that modern biology for the most part sees itself as a thoroughly empirical discipline that engages either in real natural history or in (...)
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  15.  63
    Collective Epistemology.Hans Bernhard Schmid, Daniel Sirtes & Marcel Weber (eds.) - 2011 - Ontos.
    The aim of this volume is to examine this claim, and to place it in the wider context of recent epistemological debates about the role of sociality in knowledge acquisition.
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  16. Determinism, realism, and probability in evolutionary theory.Marcel Weber - 2001 - Proceedings of the Philosophy of Science Association 2001 (3):S213-.
    Recent discussion of the statistical character of evolutionary theory has centered around two positions: (1) Determinism combined with the claim that the statistical character is eliminable, a subjective interpretation of probability, and instrumentalism; (2) Indeterminism combined with the claim that the statistical character is ineliminable, a propensity interpretation of probability, and realism. I point out some internal problems in these positions and show that the relationship between determinism, eliminability, realism, and the interpretation of probability is more complex than previously assumed (...)
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  17.  16
    Determinism, Realism, and Probability in Evolutionary Theory.Marcel Weber - 2001 - Philosophy of Science 68 (S3):S213-S224.
    Recent discussion of the statistical character of evolutionary theory has centered around two positions: Determinism combined with the claim that the statistical character is eliminable, a subjective interpretation of probability, and instrumentalism; Indeterminism combined with the claim that the statistical character is ineliminable, a propensity interpretation of probability, and realism. I point out some internal problems in these positions and show that the relationship between determinism, eliminability, realism, and the interpretation of probability is more complex than previously assumed in this (...)
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  18. Philosophy of Developmental Biology.Marcel Weber - 2022 - Cambridge: Cambridge University Press.
    The history of developmental biology is interwoven with debates as to whether mechanistic explanations of development are possible or whether alternative explanatory principles or even vital forces need to be assumed. In particular, the demonstrated ability of embryonic cells to tune their developmental fate precisely to their relative position and the overall size of the embryo was once thought to be inexplicable in mechanistic terms. Taking a causal perspective, this Element examines to what extent and how developmental biology, having turned (...)
  19. Indeterminism in neurobiology.Marcel Weber - 2005 - Philosophy of Science 72 (5):663-674.
    I examine different arguments that could be used to establish indeterminism of neurological processes. Even though scenarios where single events at the molecular level make the difference in the outcome of such processes are realistic, this falls short of establishing indeterminism, because it is not clear that these molecular events are subject to quantum mechanical uncertainty. Furthermore, attempts to argue for indeterminism autonomously (i.e., independently of quantum mechanics) fail, because both deterministic and indeterministic models can account for the empirically observed (...)
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  20.  61
    Representing genes: Classical mapping techniques and the growth of genetical knowledge.Marcel Weber - 1998 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 29 (2):295-315.
  21. The aim and structure of ecological theory.Marcel Weber - 1999 - Philosophy of Science 66 (1):71-93.
    I present an attempt at an explication of the ecological theory of interspecific competition, including its explanatory role in community ecology and evolutionary biology. The account given is based on the idea that law-like statements play an important role in scientific theories of this kind. I suggest that the principle of competitive exclusion is such a law, and that it is evolutionarily invariant. The principle's empirical status is defended and implications for the ongoing debates on the existence of biological laws (...)
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  22.  16
    Discussion Note: Which Kind of Causal Specificity Matters Biologically?Marcel Weber - unknown
    Griffiths et al. have proposed a quantitative measure of causal specificity and used it to assess various attempts to single out genetic causes as being causally more specific than other cellular mechanisms, for example, alternative splicing. Focusing in particular on developmental processes, they have identified a number of important challenges for this project. In this discussion note, I would like to show how these challenges can be met.
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  23.  47
    Theory testing in experimental biology: the chemiosmotic mechanism of ATP synthesis.Marcel Weber - 2002 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 33 (1):29-52.
    Historians of biology have argued that much of the dynamics of experimental disciplines such as genetics or molecular biology can be understood from studying experimental systems and model organisms alone . Such accounts contrast sharply with more traditional philosophies of science which viewed scientific research essentially as a process of inventing and testing theories. I present a case from the history of biochemistry which can be viewed from both the experimental systems perspective and from the methodology of theory testing. I (...)
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  24.  34
    Probabilities, Laws, and Structures.Dennis Dieks, Wenceslao J. Gonzalez, Stephan Hartmann, Michael Stöltzner & Marcel Weber - 2012 - Berlin: Springer.
    This volume, the third in this Springer series, contains selected papers from the four workshops organized by the ESF Research Networking Programme "The Philosophy of Science in a European Perspective" (PSE) in 2010: Pluralism in the Foundations of Statistics Points of Contact between the Philosophy of Physics and the Philosophy of Biology The Debate on Mathematical Modeling in the Social Sciences Historical Debates about Logic, Probability and Statistics The volume is accordingly divided in four sections, each of them containing papers (...)
  25.  18
    Representing genes: classical mapping techniques and the growth of genetical knowledge.Marcel Weber - 1998 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 29 (2):295-315.
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  26.  16
    Theory testing in experimental biology: the chemiosmotic mechanism of ATP synthesis.Marcel Weber - 2002 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 33 (1):29-52.
  27.  25
    Explanation, Prediction, and Confirmation.Stephan Hartmann, Marcel Weber, Wenceslao Gonzalez, Dennis Dieks & Thomas Uebe (eds.) - 2011 - Berlin: Springer.
    This volume, the second in the Springer series Philosophy of Science in a European Perspective, contains selected papers from the workshops organised by the ESF Research Networking Programme PSE (The Philosophy of Science in a European Perspective) in 2009. Five general topics are addressed: 1. Formal Methods in the Philosophy of Science; 2. Philosophy of the Natural and Life Sciences; 3. Philosophy of the Cultural and Social Sciences; 4. Philosophy of the Physical Sciences; 5. History of the Philosophy of Science. (...)
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  28. Reference, Truth, and Biological Kinds.Marcel Weber - 2014 - In: J. Dutant, D. Fassio and A. Meylan (Eds.) Liber Amicorum Pascal Engel.
    This paper examines causal theories of reference with respect to how plausible an account they give of non-physical natural kind terms such as ‘gene’ as well as of the truth of the associated theoretical claims. I first show that reference fixism for ‘gene’ fails. By this, I mean the claim that the reference of ‘gene’ was stable over longer historical periods, for example, since the classical period of transmission genetics. Second, I show that the theory of partial reference does not (...)
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  29. Genes, Causation and Intentionality.Marcel Weber - 2005 - History and Philosophy of the Life Sciences 27 (3/4):399-411.
    I want to exhibit the deeper metaphysical reasons why some common ways of describing the causal role of genes in development and evolution are problematic. Specifically, I show why using the concept of information in an intentional sense in genetics is inappropriate, even given a naturalistic account of intentionality. Furthermore, I argue that descriptions that use notions such as programming, directing or orchestrating are problematic not for empirical reasons, but because they are not strictly causal. They are intentional. By contrast, (...)
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  30.  77
    Fitness made physical: The supervenience of biological concepts revisited.Marcel Weber - 1996 - Philosophy of Science 63 (3):411-431.
    The supervenience and multiple realizability of biological properties have been invoked to support a disunified picture of the biological sciences. I argue that supervenience does not capture the relation between fitness and an organism's physical properties. The actual relation is one of causal dependence and is, therefore, amenable to causal explanation. A case from optimality theory is presented and interpreted as a microreductive explanation of fitness difference. Such microreductions can have considerable scope. Implications are discussed for reductive physicalism in evolutionary (...)
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  31. Experimentation versus Theory Choice: A Social-Epistemological Approach.Marcel Weber - 2011 - In Hans Bernhard Schmid, Daniel Sirtes & Marcel Weber (eds.), Collective Epistemology. Ontos. pp. 20--203.
  32.  3
    Menschliches Leben.Sebastian Knell & Marcel Weber - 2009 - Walter de Gruyter.
    Human existence and its temporal limits are central themes of western culture. In addition to discussing fundamental metaphysical questions and ethical questions, this book examines questions surrounding the possibility of radically extending one's life through new a anti-aging therapies. Does adding years to one's life make one happier?
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  33.  15
    1. Preface Preface (pp. i-ii).Marcel Weber, Warren Schmaus, Heather A. Jamniczky, Gry Oftedal, Robert C. Bishop, Axel Gelfert, Mathias Frisch, Daniel Parker, Mario Castagnino & Olimpia Lombardi - 2005 - Philosophy of Science 72 (5):687-698.
    The study of similarity is fundamental to biological inquiry. Many homology concepts have been formulated that function successfully to explain similarity in their native domains, but fail to provide an overarching account applicable to variably interconnected and independent areas of biological research despite the monistic standpoint from which they originate. The use of multiple, explicitly articulated homology concepts, applicable at different levels of the biological hierarchy, allows a more thorough investigation of the nature of biological similarity. Responsible epistemological pluralism as (...)
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  34. Causal Specificity, Biological Possibility and Non-parity about Genetic Causes.Marcel Weber - manuscript
    Several authors have used the notion of causal specificity in order to defend non-parity about genetic causes (Waters 2007, Woodward 2010, Weber 2017, forthcoming). Non-parity in this context is the idea that DNA and some other biomolecules that are often described as information-bearers by biologists play a unique role in life processes, an idea that has been challenged by Developmental Systems Theory (e.g., Oyama 2000). Indeed, it has proven to be quite difficult to state clearly what the alleged special role (...)
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  35.  61
    Critical Notice: D arwinian Reductionism.Marcel Weber - 2008 - Biology and Philosophy 23 (1):143-152.
    This notice provides a critical discussion of some of the issues from Alex Rosenberg’s Darwinian Reductionism, in particular proper functions and the relationship of proximate and ultimate biology, developmental programs and genocentrism, biological laws, the principle of natural selection as a fundamental law, genetic determinism, and the definition of “reductionism.”.
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  36. Incommensurability and theory comparison in experimental biology.Marcel Weber - 2002 - Biology and Philosophy 17 (2):155-169.
    Incommensurability of scientific theories, as conceived by Thomas Kuhnand Paul Feyerabend, is thought to be a major or even insurmountable obstacletothe empirical comparison of these theories. I examine this problem in light ofaconcrete case from the history of experimental biology, namely the oxidativephosphorylation controversy in biochemistry (ca. 1961-1977). After a briefhistorical exposition, I show that the two main competing theories which werethe subject of the ox-phos controversy instantiate some of the characteristicfeatures of incommensurable theories, namely translation failure,non-corresponding predictions, and different (...)
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  37.  69
    Explanation, Prediction, and Confirmation.Dennis Dieks, Wenceslao Gonzalo, Thomas Uebel, Stephan Hartmann & Marcel Weber (eds.) - 2011 - Springer.
    This volume, the second in the Springer series Philosophy of Science in a European Perspective, contains selected papers from the workshops organised by the ESF ...
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  38. The Reduction of Classical Experimental Embryology to Molecular Developmental Biology: A Tale of Three Sciences.Marcel Weber - 2024 - In William Bausman, Janella Baxter & Oliver Lean (eds.), From Biological Practice to Scientific Metaphysics. Minnesota Studies in Philosophy of Science, Vol. 23. Minneapolis: University of Minnesota Press.
    I attempt to characterize the relationship of classical experimental embryology (CEE) and molecular developmental biology and compare it to the much-discussed case of classical genetics. These sciences are treated here as discovery practices rather than as definitive forms of knowledge. I first show that CEE had some causal knowledge and hence was able to answer specific why?-questions. A paradigm was provided by the case of eye induction, perhaps CEE’s greatest success. The case of the famous Spemann-Mangold organizer is more difficult. (...)
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  39.  51
    On the Incompatibility of Dynamical Biological Mechanisms and Causal Graph Theory.Marcel Weber - unknown
    I examine the adequacy of the causal graph-structural equations approach to causation for modeling biological mechanisms. I focus in particular on mechanisms with complex dynamics such as the PER biological clock mechanism in Drosophila. I show that a quantitative model of this mechanism that uses coupled differential equations – the well-known Goldbeter model – cannot be adequately represented in the standard causal graph framework, even though this framework does permit causal cycles. The reason is that the model contains dynamical information (...)
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  40. Hans Drieschs argumente für den Vitalismus.Marcel Weber - 1999 - Philosophia Naturalis 36 (2):263-293.
    Ich rekonstruiere und kritisiere Hans Drieschs Argumentation für die Behauptung, daß biologischen Prozessen nur eine substanzdualistische Ontologie der belebten Materie (Vitalismus) gerecht werden kann. Meine Diagnose lautet, daß Drieschs Argumentation zwar logisch schlüssig ist bzw. durch leichte Modifikationen in eine logisch gültige Form gebracht werden kann, aber von empirisch unbegründeten, metaphysischen Prämissen über die Möglichkeiten eines energieumwandelnden Mechanismus ausgeht.
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  41. Darwinism as a Theory for Finite Beings.Marcel Weber - 2005 - In Vittorio G. Hösle & Christian F. Illies (eds.), Darwinism and Philosophy. Notre Dame, Indiana 46556, USA: pp. 275-297.
    Darwin famously held that his use of the term "chance" in evolutionary theory merely "serves to acknowledge plainly our ignorance of the causes of each particular variation". Is this a tenable view today? Or should we revise our thinking about chance in evolution in light of the more advanced, quantitative models of Neo-Darwinian theory, which make substantial use of statistical reasoning and the concept of probability? Is determinism still a viable metaphysical doctrine about biological reality after the quantum revolution in (...)
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  42.  41
    Evolutionary plasticity in prokaryotes: A panglossian view.Marcel Weber - 1996 - Biology and Philosophy 11 (1):67-88.
    Enzyme directed genetic mechanisms causing random DNA sequence alterations are ubiquitous in both eukaryotes and prokaryotes. A number of molecular geneticist have invoked adaptation through natural selection to account for this fact, however, alternative explanations have also flourished. The population geneticist G.C. Williams has dismissed the possibility of selection for mutator activity on a priori grounds. In this paper, I attempt a refutation of Williams' argument. In addition, I discuss some conceptual problems related to recent claims made by microbiologists on (...)
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  43. Philosophie der Lebenswissenschaften.Susanne Bauer, Lara Huber, Marie I. Kaiser, Lara Keuck, Ulrich Krohs, Maria Kronfeldner, Peter McLaughlin, Kären Nickelson, Thomas Reydon, Neil Roughley, Christian Sachse, Marianne Schark, Georg Toepfer, Marcel Weber & Markus Wild - 2013 - Information Philosophie 4:14-27.
    This paper summarizes (in German) recent tendencies in the philosophy of the life sciences.
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  44. Rules, Reductionism, and Normativity: A Naturalistic Rejoinder.Marcel Weber - 2008 - In Sven Walter & Helen Bohse (eds.), GAP.6: Selected Papers Contributed to the Sections of the Sixth International Congress of the German Society for Analytic Philosophy.
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  45.  7
    Under the Lamppost.Marcel Weber - 2001 - In Peter McLaughlin, Peter Machamer & Rick Grush (eds.), Theory and Method in the Neurosciences. Pittsburgh University Press. pp. 231.
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  46. Life in a Physical World: The Place of the Life Sciences.Marcel Weber - 2010 - In F. Stadler, D. Dieks, W. Gonzales, S. Hartmann, T. Uebel & M. Weber (eds.), The Present Situation in the Philosophy of Science. Springer. pp. 155--168.
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  47. Behavioral traits, the intentional stance, and biological functions.Marcel Weber - 2011 - In Kathryn Plaisance & Thomas A. C. Reydon (eds.), Philosophy of Behavioral Biology. Berlin: Springer. pp. 317-328.
    It has been claimed that the intentional stance is necessary to individuate behavioral traits. This thesis, while clearly false, points to two interesting sets of problems concerning biological explanations of behavior: The first is a general in the philosophy of science: the theory-ladenness of observation. The second problem concerns the principles of trait individuation, which is a general problem in philosophy of biology. After discussing some alternatives, I show that one way of individuating the behavioral traits of an organism is (...)
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  48.  14
    Probabilities, Laws, and Structures.Dennis Dieks, Wenceslao J. Gonzalez, Stephan Hartmann, Michael Stöltzner & Marcel Weber (eds.) - 2012 - Springer Verlag.
    This volume, the third in this Springer series, contains selected papers from the four workshops organized by the ESF Research Networking Programme "The Philosophy of Science in a European Perspective" in 2010: Pluralism in the Foundations of Statistics Points of Contact between the Philosophy of Physics and the Philosophy of Biology The Debate on Mathematical Modeling in the Social Sciences Historical Debates about Logic, Probability and Statistics The volume is accordingly divided in four sections, each of them containing papers coming (...)
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  49. Searching for New Contrasts.F. G. Riffert & Marcel Weber (eds.) - 2002 - Vienna: Peter Lang.
     
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  50.  3
    Introduction.Daniel Sirtes, Hans Bernhard Schmid & Marcel Weber - 2011 - In Hans Bernhard Schmid, Daniel Sirtes & Marcel Weber (eds.), Collective Epistemology. Ontos. pp. 1-10.
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