Biological ontologies are used to organize, curate, and interpret the vast quantities of data arising from biological experiments. While this works well when using a single ontology, integrating multiple ontologies can be problematic, as they are developed independently, which can lead to incompatibilities. The Open Biological and Biomedical Ontologies Foundry was created to address this by facilitating the development, harmonization, application, and sharing of ontologies, guided by a set of overarching principles. One challenge in reaching these goals was that the (...) OBO principles were not originally encoded in a precise fashion, and interpretation was subjective. Here we show how we have addressed this by formally encoding the OBO principles as operational rules and implementing a suite of automated validation checks and a dashboard for objectively evaluating each ontology’s compliance with each principle. This entailed a substantial effort to curate metadata across all ontologies and to coordinate with individual stakeholders. We have applied these checks across the full OBO suite of ontologies, revealing areas where individual ontologies require changes to conform to our principles. Our work demonstrates how a sizable federated community can be organized and evaluated on objective criteria that help improve overall quality and interoperability, which is vital for the sustenance of the OBO project and towards the overall goals of making data FAIR. Competing Interest StatementThe authors have declared no competing interest. (shrink)

The current COVID-19 pandemic and the previous SARS/MERS outbreaks of 2003 and 2012 have resulted in a series of major global public health crises. We argue that in the interest of developing effective and safe vaccines and drugs and to better understand coronaviruses and associated disease mechenisms it is necessary to integrate the large and exponentially growing body of heterogeneous coronavirus data. Ontologies play an important role in standard-based knowledge and data representation, integration, sharing, and analysis. Accordingly, we initiated the (...) development of the community-based Coronavirus Infectious Disease Ontology in early 2020. -/- As an Open Biomedical Ontology (OBO) library ontology, CIDO is open source and interoperable with other existing OBO ontologies. CIDO is aligned with the Basic Formal Ontology and Viral Infectious Disease Ontology. CIDO has imported terms from over 30 OBO ontologies. For example, CIDO imports all SARS-CoV-2 protein terms from the Protein Ontology, COVID-19-related phenotype terms from the Human Phenotype Ontology, and over 100 COVID-19 terms for vaccines (both authorized and in clinical trial) from the Vaccine Ontology. CIDO systematically represents variants of SARS-CoV-2 viruses and over 300 amino acid substitutions therein, along with over 300 diagnostic kits and methods. CIDO also describes hundreds of host-coronavirus protein-protein interactions (PPIs) and the drugs that target proteins in these PPIs. CIDO has been used to model COVID-19 related phenomena in areas such as epidemiology. The scope of CIDO was evaluated by visual analysis supported by a summarization network method. CIDO has been used in various applications such as term standardization, inference, natural language processing (NLP) and clinical data integration. We have applied the amino acid variant knowledge present in CIDO to analyze differences between SARS-CoV-2 Delta and Omicron variants. CIDO's integrative host-coronavirus PPIs and drug-target knowledge has also been used to support drug repurposing for COVID-19 treatment. -/- CIDO represents entities and relations in the domain of coronavirus diseases with a special focus on COVID-19. It supports shared knowledge representation, data and metadata standardization and integration, and has been used in a range of applications. (shrink)

The editor of this volume takes it to mean that a prior experience affects behavior without the individual's appreciation (ability to report) of this...

The upcoming U.S. Supreme Court decision in Dobbs v. Jackson Women’s Health Organization has the potential to eliminate or severely restrict access to legal abortion care in the United States. We a...

A longitudinal study of 308 white -collar U.S. employees revealed that feelings of hope and gratitude increase concern for corporate social responsibility. In particular, employees with stronger hope and gratitude were found to have a greater sense of responsibility toward employee and societal issues; interestingly, employee hope and gratitude did not affect sense of responsibility toward economic and safety/quality issues. These findings offer an extension of research by Giacalone, Paul, and Jurkiewicz.

This essay critiques feminist treatments of maternal-fetal "relationality" that unwittingly replicate features of Western individualism (for example, the Cartesian division between the asocial body and the social-cognitive person, or the conflation of social and biological birth). I argue for a more reflexive perspective on relationality that would acknowledge how we produce persons through our actions and rhetoric. Personhood and relationality can be better analyzed as dynamic, negotiated qualities realized through social practice.

A friend once told me I was wasting my time writing about cross-cultural perspectives on the beginnings of life. “Your work is interesting for its curiosity value,” he said, “but fundamentally worthless. What happens in other cultures is totally irrelevant to what is happening here.” Those were discouraging words, but as I followed the American debates about the beginnings and ends of life, it seemed he was right. Anthropologists have written a great deal about birth and death rites in other (...) societies and about non-western notions of personhood, but to date our findings have had little impact on American policy, ethics, or law. The recognized experts on contentious topics such as abortion and euthanasia tend to come from the fields of philosophy, bioethics, theology, law, and biology, but rarely from the social sciences. I was a bit surprised, therefore, to be invited to address the Thomas A. Pitts Memorial Lectureship on “Defining the Beginning and the End of Human Life.”. (shrink)

Aeschylus' account of the sacrifice of Iphigeneia in theAgamemnonhas elicited an extraordinarily wide range of interpretations–a critical response which, in its veryproductivity, may signal a central aspect of the description itself. While more recent explications have been profitably informed by research in cult and ritual, there remains, I would like to suggest, an important literary possibility which merits consideration, particularly in a text where so much has been shaped from a close and profound engagement with the Homeric tradition. The description (...) of the sacrifice is forcefully carried by enjambement from one stanza into another by the sheer weight, as it were, of the force that crushingly silences, βίαι χαλινὦν τ᾿ άναύδωι μ⋯νει. In the midst of much that is dark and difficult to construe, the composition yields a sudden effusion of colour, a striking trail of saffron. The sense of concealment, of a figure enveloped or enshrouded, which has been suggested by the phrase πέπλοισι περιπετή, opens on to an image of unfolding, the falling spread of a robe caught in itsflow towards the ground, κρόκου βαφάς δ ⋯ς πέδονχέουσα. (shrink)

Democratically inspired critics identify a number of problems with the contemporaryidentification of survey research and public opinion. Surveys are said tonormalize or rationalize opinion, to promote state or corporate rather thandemocratic interests, to constrain authentic forms of participation, and to forcean individualized conception of public opinion. Some of these criticisms arerelatively easily answered by survey researchers. But the criticisms contain acomplaint that survey researchers have largely failed to address: that surveyresearch discourages the public, visible, and face-to-face generation of opinion.Public opinion (...) researchers who use surveys paradoxically seek the opinions ofcitizens in private, nonpolitical situations. But nothing inherent in the methodsof survey research requires this private focus. The author argues that by reframingthe survey's unit of analysis and considering alternatives to standard,national samples in political surveys, new democratic possibilities within surveyresearch may be found. (shrink)

Aeschylus' account of the sacrifice of Iphigeneia in the Agamemnon has elicited an extraordinarily wide range of interpretations–a critical response which, in its veryproductivity, may signal a central aspect of the description itself. While more recent explications have been profitably informed by research in cult and ritual, there remains, I would like to suggest, an important literary possibility which merits consideration, particularly in a text where so much has been shaped from a close and profound engagement with the Homeric tradition. (...) The description of the sacrifice is forcefully carried by enjambement from one stanza into another by the sheer weight, as it were, of the force that crushingly silences, βίαι χαλινν τ᾿ άναύδωι μνει . In the midst of much that is dark and difficult to construe, the composition yields a sudden effusion of colour, a striking trail of saffron. The sense of concealment, of a figure enveloped or enshrouded, which has been suggested by the phrase πέπλοισι περιπετή , opens on to an image of unfolding, the falling spread of a robe caught in itsflow towards the ground, κρόκου βαφάς δ ς πέδονχέουσα. (shrink)

: Today's personable, sanitized images of human embryos and fetuses require an audience that is literally and metaphorically distanced from dead specimens. Yet scientists must handle dead specimens to produce embryological knowledge, which only then can be transformed into beautiful photographs and talking fetuses. I begin with an account of Gertrude Stein's experience making a model of a fetal brain. Her tactile encounter is contrasted to the avant-garde artistic tradition that later came to dominate embryo imagery. This essay shows the (...) embryo visualizations portrayed in a contemporary coffee-table book about gestational development to be a remarkable political achievement predicated, in part, on keeping hidden the unsavory details of anatomical technique that transform dead specimens into icons of life. (shrink)

The main goal of this study was to identify factors motivating pragmatic transfer in advanced learners of English. Based on a cross-cultural comparison of requesting behavior between Koreans and Americans, this study determined the impact of individual subjective motives on pragmatic language choice. Two different groups of subjects participated in this study: 30 Korean participants and 30 American college students. Data were collected by using a Discourse Completion Task. Korean participants provided the data for Korean and English versions of DCT. (...) Semi-structured interviews were also conducted with 13 Korean ESL learners who showed the most and least amount of pragmatic transfer. Findings showed evidence of pragmatic transfer in the request responses given by Korean ESL learners in their requestive strategies, level of directness, and perspectives of head acts. The interview data revealed that Korean students were conscious of differing rules for making requests. Learners’ judgment of L2 pragmatic norms, perception of their own language, and their attitudes of the target language influence language use. Furthermore, findings showed that purpose of learning English, different types of motivation, and the length of intended residence contribute to the extent of pragmatic transfer. (shrink)

SummaryQuine uses the notion of ‘quality space’ in Word and Object and in ‘Natural Kinds' as a means of characterizing similarity recognition, which in turn is seen as basic to induction and to language acquisition. In this paper it is argued that ‘quality space’ is too simplistic a notion to bear the explanatory weight given to ‘similarity’. Similarity is explanatorily plausible only because it contains much covert complexity and is essentially mentalistic. The attempt to expunge this mentalism by the behavioural (...) mapping of quality spaces simply loses the explanatory force of similarity.RésuméQuine utilise dans ≤Word and Object≥ et dans ≤Natural Kinds≥ la notion ?on; ≤espace des qualityés≥ comme une façon de caractériser la reconnaissance de la similitude, qui est à son tour considérée comme fondamentale pour ľinduction ct pour ľacquisition du langage. auteur montre que la notion ?on; ≤cspace des qualityés≥ est trop simpliste pour fournir une base suffisante à la valeur explicative attendue de la ≤similitude≥. La similitude ňest plausible comme explication que parce qu'elle cache une grande complexité et čest une notion essentiellement mentale. La tentative de remplacer ce mentalisme par une projection behavioriste sur ľespace des qualites fait perdre à la similitude sa valeur explicative.ZusammenfassungIn ≤Word and Object≥ und in ≤Natural Kinds≥ benutzt Quine den Begriff ≤Eigenschafts‐raum≥ als Mittel um die Wahrnehmung der Ähnlichkeit zu charakterisieren, welche ihrerseits als grundlegend für Induktion und Aneignung der Sprache betrachtet wird. In der vorliegenden Arbeit wird argumentiert, dass dieser ≤Eigenschaftsraum≥ zu arm ist, um den Erklärungsgehalt des Begriffs ≤Ähnlichkeit≥ zu tragen. Die Erklärung durch Ähnlichkeit ist nur deshalb plausibel, weil sie versteckte Komplexität enthält und wesentlich mentalistisch ist. Bei dem Versuch, diesem Men‐talismus mithilfe der behavioristischen Abbildung der Eigenschäftsraume auszuweichen, geht die Erklärungskraft des Begriffs der Ähnlichkeit einfach verloren. (shrink)

Today's personable, sanitized images of human embryos and fetuses require an audience that is literally and metaphorically distanced from dead specimens. Yet scientists must handle dead specimens to produce embryological knowledge, which only then can be transformed into beautiful photographs and talking fetuses. I begin with an account of Gertrude Stein's experience making a model of a fetal brain. Her tactile encounter is contrasted to the avant-garde artistic tradition that later came to dominate embryo imagery. This essay shows the embryo (...) visualizations portrayed in a contemporary coffee-table book about gestational development to be a remarkable political achievement predicated, in part, on keeping hidden the unsavory details of anatomical technique that transform dead specimens into icons of life. (shrink)

SummaryQuine uses the notion of ‘quality space’ in Word and Object and in ‘Natural Kinds' as a means of characterizing similarity recognition, which in turn is seen as basic to induction and to language acquisition. In this paper it is argued that ‘quality space’ is too simplistic a notion to bear the explanatory weight given to ‘similarity’. Similarity is explanatorily plausible only because it contains much covert complexity and is essentially mentalistic. The attempt to expunge this mentalism by the behavioural (...) mapping of quality spaces simply loses the explanatory force of similarity.RésuméQuine utilise dans ≤Word and Object≥ et dans ≤Natural Kinds≥ la notion?on; ≤espace des qualityés≥ comme une façon de caractériser la reconnaissance de la similitude, qui est à son tour considérée comme fondamentale pour ľinduction ct pour ľacquisition du langage. auteur montre que la notion?on; ≤cspace des qualityés≥ est trop simpliste pour fournir une base suffisante à la valeur explicative attendue de la ≤similitude≥. La similitude ňest plausible comme explication que parce qu'elle cache une grande complexité et čest une notion essentiellement mentale. La tentative de remplacer ce mentalisme par une projection behavioriste sur ľespace des qualites fait perdre à la similitude sa valeur explicative.ZusammenfassungIn ≤Word and Object≥ und in ≤Natural Kinds≥ benutzt Quine den Begriff ≤Eigenschafts‐raum≥ als Mittel um die Wahrnehmung der Ähnlichkeit zu charakterisieren, welche ihrerseits als grundlegend für Induktion und Aneignung der Sprache betrachtet wird. In der vorliegenden Arbeit wird argumentiert, dass dieser ≤Eigenschaftsraum≥ zu arm ist, um den Erklärungsgehalt des Begriffs ≤Ähnlichkeit≥ zu tragen. Die Erklärung durch Ähnlichkeit ist nur deshalb plausibel, weil sie versteckte Komplexität enthält und wesentlich mentalistisch ist. Bei dem Versuch, diesem Men‐talismus mithilfe der behavioristischen Abbildung der Eigenschäftsraume auszuweichen, geht die Erklärungskraft des Begriffs der Ähnlichkeit einfach verloren. (shrink)

This paper examines two reasons anthropological expertise has recently come to be considered relevant to American debates about the beginnings and ends of life. First, bioethicists and clinicians working to accommodate diverse perspectives into clinical decision-making have come to appreciate the importance of culture. Second, anthropologists are the recognized authorities on the cultural logic and behaviors of the “Other.” Yet the definitions of culture with which bioethicists and clinicians operate may differ from those used by contemporary anthropologists, who view culture (...) as a contingent, contested set of social practices that are continually formulated and re-negotiated in daily interactions. Using ethnographic examples, the author argues that the qualities that constitute “personhood” should be sought in social practices rather than in cognitive capacities or moral attributes. (shrink)

This collection of original essays by leading and emerging scholars in the field examines the history, conditions, organization, and strategies of pro bono lawyering. Private Lawyers and the Public Interest: The Evolving Role of Pro Bono in the Legal Profession traces the rise and impact of the American Bar Association's campaign to hold lawyers accountable for a commitment to public service and to encourage public service within law schools. Combining empirical legal research with reflections by practitioners and theorists about the (...) meaning and practice of pro bono legal work, this collection of essays interrogates the public service ideals that are inscribed within the legal profession and places these ideals within a broader social, economic, ideological, and normative context. Particular attention is paid to the factors that explain why lawyers engage in pro bono work and the ways in which their views of pro bono are mediated by the institutional context of their legal practice. The book also explores the concept of "public" in public service and compares pro bono as a means of delivering legal services with other mechanisms such as state funding. Collectively, these essays investigate the evolving role of pro bono in the legal profession and in law schools, the relationship between pro bono ideals and pro bono in practice, the way that pro bono is shaped by external forces beyond the individual practitioner, and the multi-faceted nature of legal professionalism as expressed through pro bono practice. (shrink)