Results for 'Enzyme classification'

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  1.  42
    Enzyme classification and the entanglement of values and epistemic standards.Stijn Conix - 2020 - Studies in History and Philosophy of Science Part A 84:37-45.
    This paper investigates the case of enzyme classification to evaluate different ideals for regulating values in science. I show that epistemic and non-epistemic considerations are inevitably and untraceably entangled in enzyme classification, and argue that this has significant implications for the two main kinds of views on values in science, namely, Epistemic Priority Views and Joint Satisfaction Views. More precisely, I argue that the case of enzyme classification poses a problem for the usability and (...)
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  2. Causal classification of diseases.Andrej Poleev - 2020 - Enzymes.
    „Errors are the greatest obstacles to the progress of science; to correct such errors is of more practical value than to achieve new knowledge,“ asserted Eugen Bleuler. Basic error of several prevailing classification schemes of pathological conditions, as for example ICD-10, lies in confusing and mixing symptoms with diseases, what makes them unscientific. Considering the need to bring order into the chaos and light into terminological obscureness, I introduce the Causal classification of diseases originating from the notion of (...)
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  3.  22
    In defence of taxonomic governance.Stijn Conix - 2019 - Organisms, Diversity and Evolution 19 (2):87-97.
    It is well known that taxonomists rely on many different methods and criteria for species delimitation, leading to different kinds of groups being recognised as species. While this state of relative disorder is widely acknowledged, there is no similar agreement about how it should be resolved. This paper considers the view that the disorder in species classification should be resolved by a system of taxonomic governance. I argue that such a system of governance is best seen as a combination (...)
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  4. The use of race in medicine as a proxy for genetic differences.Michael Root - 2003 - Philosophy of Science 70 (5):1173-1183.
    Race is a prominent category in medicine. Epidemiologists describe how rates of morbidity and mortality vary with race, and doctors consider the race of their patients when deciding whether to test them for sickle‐cell anemia or what drug to use to treat their hypertension. At the same time, critics of racial classification say that race is not real but only an illusion or that race is scientifically meaningless. In this paper, I explain how race is used in medicine as (...)
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  5.  12
    Science as a way of knowing: the foundations of modern biology.John Alexander Moore - 1993 - Cambridge, Mass.: Harvard University Press.
    Introduction A Brief Conceptual Framework for Biology PART ONE: UNDERSTANDING NATURE 1. The Antecedents of Scientific Thought Animism, Totemism, and Shamanism The Paleolithic View Mesopotamia Egypt 2. Aristotle and the Greek View of Nature The Science of Animal Biology The Parts of Animals The Classification of Animals The Aristotelian System Basic Questions 3. Those Rational Greeks? Theophrastus and the Science of Botany The Roman Pliny Hippocrates, the Father of Medicine Erasistratus Galen of Pergamum The Greek Miracle 4. The Judeo-Christian (...)
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  6.  20
    The many colours of chromodomains.Alexander Brehm, Katharina R. Tufteland, Rein Aasland & Peter B. Becker - 2004 - Bioessays 26 (2):133-140.
    Local differences in chromatin organisation may profoundly affect the activity of eukaryotic genomes. Regulation at the level of DNA packaging requires the targeting of structural proteins and histone‐modifying enzymes to specific sites and their stable or dynamic interaction with the nucleosomal fiber. The “chromodomain”, a domain shared by many regulators of chromatin structure, has long been suspected to serve as a module mediating chromatin interactions in a variety of different protein contexts. However, recent functional analyses of a number of different (...)
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  7.  33
    The use of race as proxy in medicine for genetic differences.Michael Root - unknown
    Race is a prominent category in medicine. Epidemiologists describe how rates of morbidity and mortality vary with race, and doctors consider the race of their patients when deciding whether to test them for sickle cell anemia or what drug to use to treat their hypertension. At the same time, critics of racial classification say that race is not real but only an illusion or that race is scientifically meaningless. In this paper, I explain how race is used in medicine (...)
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  8. Enzyme replacement therapy and the rule of rescue.Mark Sheehan - 2010 - In Matti Häyry (ed.), Arguments and analysis in bioethics. Amsterdam: Rodopi.
     
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  9. Potato Classification Using Deep Learning.Abeer A. Elsharif, Ibtesam M. Dheir, Alaa Soliman Abu Mettleq & Samy S. Abu-Naser - 2020 - International Journal of Academic Pedagogical Research (IJAPR) 3 (12):1-8.
    Abstract: Potatoes are edible tubers, available worldwide and all year long. They are relatively cheap to grow, rich in nutrients, and they can make a delicious treat. The humble potato has fallen in popularity in recent years, due to the interest in low-carb foods. However, the fiber, vitamins, minerals, and phytochemicals it provides can help ward off disease and benefit human health. They are an important staple food in many countries around the world. There are an estimated 200 varieties of (...)
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  10.  14
    Classification by decomposition: a novel approach to classification of symmetric $$2\times 2$$ games.Mikael Böörs, Tobias Wängberg, Tom Everitt & Marcus Hutter - 2022 - Theory and Decision 93 (3):463-508.
    In this paper, we provide a detailed review of previous classifications of 2 × 2 games and suggest a mathematically simple way to classify the symmetric 2 × 2 games based on a decomposition of the payoff matrix into a cooperative and a zero-sum part. We argue that differences in the interaction between the parts is what makes games interesting in different ways. Our claim is supported by evolutionary computer experiments and findings in previous literature. In addition, we provide a (...)
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  11.  27
    Enzyme organization and stability of metabolic pathways: A comparison of various approaches.Robert Costalat - 1996 - Acta Biotheoretica 44 (3-4):235-247.
    The aim of this paper is to compare various methods for the quantification of metabolic pathways dynamics. A Yates-Pardee metabolic pathway with enzyme organization, i.e. with spatial localization of the enzymes in a specific cellular compartment, was studied using: (i) the classical Henri-Michaelis-Menten (HMM) equations, (ii) linearization of the HMM equations in the vicinity of a steady state (linearized formalism), and (iii) Biochemical Systems Theory formalism (BST formalism). It is shown that transient solutions computed via either the linearized formalism (...)
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  12.  13
    Deubiquitinating Enzymes in Model Systems and Therapy: Redundancy and Compensation Have Implications.Sarah Zachariah & Douglas A. Gray - 2019 - Bioessays 41 (11):1900112.
    The multiplicity of deubiquitinating enzymes (DUBs) encoded by vertebrate genomes is partly attributable to whole genome duplication events that occurred early in chordate evolution. By surveying the literature for the largest family of DUBs (the ubiquitin-specific proteases), extensive functional redundancy for duplicated genes has been confirmed as opposed to singletons. Dramatically conflicting results have been reported for loss of function studies conducted through RNA interference as opposed to inactivating mutations, but the contradictory findings can be reconciled by a recently proposed (...)
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  13.  12
    New enzymes for old: Redesigning the coenzyme and substrate specificities of glutathione reductase.Richard N. Perham, Nigel S. Scrutton & Alan Berry - 1991 - Bioessays 13 (10):515-525.
    A set of amino acid side chains that confer specificity for the coenzyme NADPH and the substrate glutathione in the flavoprotein disulphide oxidoreductase, glutathione reductase, has been identified. Systematic replacement of these amino acid residues in the coenzyme‐binding site switches the specificity of the enzyme from its natural strong preference for NADPH to a marked preference For NADH. The amino acids replaced all lie in a structural motif within the dinucleotide‐binding domain of the protein. Since this domain is a (...)
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  14. Classification universelle.Maurice Phusis - 1934 - Paris,: Librarie A. Legrand, dépositaire.
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  15.  14
    The classification of psychiatric disorders according to DSM-5 deserves an internationally standardized psychological test battery on symptom level.Dalena Van Heugten - Van Der Kloet & Ton van Heugten - 2015 - Frontiers in Psychology 6:153486.
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  16.  7
    Nouvelle classification des sciences.Adrien Naville - 1901 - Paris,: F. Alcan.
    Previously published: Paris: Ancienne librairie Germer Bailliaere, 1901.
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  17. Classification. Class B, part I, B-BJ: Philosophy.Edwin Wiley & Charles Martel (eds.) - 1910 - Washington,: Govt. print. off..
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  18.  10
    Methods for enzyme library creation: Which one will you choose?Lorea Alejaldre, Joelle N. Pelletier & Daniela Quaglia - 2021 - Bioessays 43 (8):2100052.
    Enzyme engineering allows to explore sequence diversity in search for new properties. The scientific literature is populated with methods to create enzyme libraries for engineering purposes, however, choosing a suitable method for the creation of mutant libraries can be daunting, in particular for the novices. Here, we address both novices and experts: how can one enter the arena of enzyme library design and what guidelines can advanced users apply to select strategies best suited to their purpose? Section (...)
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  19. Lemon Classification Using Deep Learning.Jawad Yousif AlZamily & Samy Salim Abu Naser - 2020 - International Journal of Academic Pedagogical Research (IJAPR) 3 (12):16-20.
    Abstract : Background: Vegetable agriculture is very important to human continued existence and remains a key driver of many economies worldwide, especially in underdeveloped and developing economies. Objectives: There is an increasing demand for food and cash crops, due to the increasing in world population and the challenges enforced by climate modifications, there is an urgent need to increase plant production while reducing costs. Methods: In this paper, Lemon classification approach is presented with a dataset that contains approximately 2,000 (...)
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  20.  52
    Digestive enzyme secretion, intuition, and the history of science: Part II. [REVIEW]Lois Isenman - 2009 - Foundations of Science 14 (4):331-349.
    A companion paper explored the role of intuition in the genesis of an alternative theory for the secretion of pancreatic digestive enzymes, looking through the lens of three philosophers/historians of science. Gerald Holton, the last scholar, proposed that scientific imagination is shaped by a number of thematic presuppositions, which function largely below awareness. They come in pairs of opposites that alternately gain cultural preeminence. The current paper examines three thematic presuppositions inherent to both the generally accepted model for digestive (...) secretion and most consciousness-centered views of higher-level cognition—discreteness, reduction, and simplicity. Since they often build on each other, together they are referred to as the simplicity worldview . Also considered are the three opposite thematic assumptions inherent to both the alternative model for digestive enzyme secretion and intuition-friendly views of higher-level cognition—the continuum, holism, and complexity—together referred to as the complexity worldview . The article highlights the potential importance to scientific knowledge of this currently less favored worldview. (shrink)
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  21.  6
    Classification des sciences.Herbert Spencer - 1901 - Paris: F. Alcan. Edited by François Réthoré.
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  22.  2
    The classification of religions.Duren James Henderson Ward - 1909 - Chicago,: The Open court publishing company [etc., etc.].
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  23.  7
    Classification of -Categorical Monadically Stable Structures.Bertalan Bodor - forthcoming - Journal of Symbolic Logic:1-36.
    A first-order structure $\mathfrak {A}$ is called monadically stable iff every expansion of $\mathfrak {A}$ by unary predicates is stable. In this paper we give a classification of the class $\mathcal {M}$ of $\omega $ -categorical monadically stable structure in terms of their automorphism groups. We prove in turn that $\mathcal {M}$ is the smallest class of structures which contains the one-element pure set, is closed under isomorphisms, and is closed under taking finite disjoint unions, infinite copies, and finite (...)
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  24. The Classification of Knowledge in the Rasa'il Ikhwan al-Safa'.Godefroid de Catallay - 2008 - In Nader El-Bizri (ed.), Epistles of the Brethren of Purity: the Ikhwān al-Ṣafāʾ and their Rasāʾil: an introduction. New York: Oxford University Press.
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  25. Classification or wonder: Coding as an analytic practice in qualitative research.Maggie MacLure - 2013 - In Rebecca Coleman & Jessica Ringrose (eds.), Deleuze and research methodologies. Edinburgh: Edinburgh University Press.
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  26.  6
    Classification from antiquity to modern times: sources, methods, and theories from an interdisciplinary perspective.Tanja Pommerening & Walter Bisang (eds.) - 2017 - Boston: Walter de Gruyter.
    The volume presents phenomena of classification and categorisation in ancient and modern cultures and provides an overview of how cultural practices and cognitive systems interact when individuals or larger groups conceptually organize their world. Scientists of antiquity studies, anthropologists, linguists etc. will find methods to reconstruct early concepts of men and nature from a synchronic and diachronic comparative perspective.
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  27.  17
    The Enzyme Theory and the Origin of Biochemistry.Robert Kohler Jr - 1973 - Isis 64:181-196.
  28. Classification of Global Catastrophic Risks Connected with Artificial Intelligence.Alexey Turchin & David Denkenberger - 2020 - AI and Society 35 (1):147-163.
    A classification of the global catastrophic risks of AI is presented, along with a comprehensive list of previously identified risks. This classification allows the identification of several new risks. We show that at each level of AI’s intelligence power, separate types of possible catastrophes dominate. Our classification demonstrates that the field of AI risks is diverse, and includes many scenarios beyond the commonly discussed cases of a paperclip maximizer or robot-caused unemployment. Global catastrophic failure could happen at (...)
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  29.  12
    Managing enzyme promiscuity in plant specialized metabolism: A lesson from flavonoid biosynthesis.Toshiyuki Waki, Seiji Takahashi & Toru Nakayama - 2021 - Bioessays 43 (3):2000164.
    Specificities of enzymes involved in plant specialized metabolism, including flavonoid biosynthesis, are generally promiscuous. This enzyme promiscuity has served as an evolutionary basis for new enzyme functions and metabolic pathways in land plants adapting to environmental challenges. This phenomenon may lead, however, to inefficiency in specialized metabolism and adversely affect metabolite‐mediated plant survival. How plants manage enzyme promiscuity for efficient specialized metabolism is, thus, an open question. Recent studies of flavonoid biosynthesis addressing this issue have revealed a (...)
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  30.  58
    How Classification Works: Nelson Goodman Among the Social Sciences.Nelson Goodman, Mary Douglas & David L. Hull (eds.) - 1992 - Edinburgh: Edinburgh University Press.
    How Classification Works attempts to bridge the gap between philosophy and the social sciences using as a focus some of the work of Nelson Goodman. Throughout his long career Goodman has addressed the question: are some ways of conceptualizing more natural than others? This book looks at the rightness of categories, assessing Goodman's role in modern philosophy and explaining some of his ideas on the relation between aesthetics and cognitive theory. Two papers by Nelson Goodman are included in the (...)
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  31.  77
    A classification scheme for codes of business ethics.Bruce R. Gaumnitz & John C. Lere - 2004 - Journal of Business Ethics 49 (4):329-335.
    A great deal of interest in codes of ethics exists in both the business community and the academic community. Within the academic community, this interest has given rise to a number of studies of codes of ethics. Many of these studies have focused on the content of various codes.One important way the study of codes of ethics can be advanced is by applying formal tools of analysis to codes of ethics. An understanding of important dimensions that may differ across codes (...)
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  32.  43
    Enzymes as Ecosystems: A Panexperientialist Account of Biocatalytic Chemical Transformation.Ross L. Stein - 2005 - Process Studies 34 (1):62-80.
  33.  45
    Biocognitive classification of antisocial individuals without explanatory reductionism.Marko Jurjako, Luca Malatesti & Inti Brazil - 2020 - Perspectives on Psychological Science 15 (4):957-972.
    Effective and specifically targeted social and therapeutic responses for antisocial personality disorders and psychopathy are scarce. Some authors maintain that this scarcity should be overcome by revising current syndrome - based classifications of these conditions and devising better biocognitive classifications of antisocial individuals. The inspiration for the latter classifications has been embedded in the Research domain criteria approach (RDoC). RDoC - type approaches to psychiatric research aim at transforming diagnosis, provide valid measures of disorders, aid clinical practice, and improve health (...)
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  34. Glass Classification Using Artificial Neural Network.Mohmmad Jamal El-Khatib, Bassem S. Abu-Nasser & Samy S. Abu-Naser - 2019 - International Journal of Academic Pedagogical Research (IJAPR) 3 (23):25-31.
    As a type of evidence glass can be very useful contact trace material in a wide range of offences including burglaries and robberies, hit-and-run accidents, murders, assaults, ram-raids, criminal damage and thefts of and from motor vehicles. All of that offer the potential for glass fragments to be transferred from anything made of glass which breaks, to whoever or whatever was responsible. Variation in manufacture of glass allows considerable discrimination even with tiny fragments. In this study, we worked glass (...) and testing of artificial neural network model created by the JustNN. The aim of the study is help investigator in identifying the type of glass found in arena of the crime. The Neural Network model was trained and validated using the type of glass dataset. The accuracy of model in predicting the type of glass reached 96.7%. Thus neural network is suitable for predicating type of glasses. (shrink)
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  35.  16
    Diagrammatic classifications of birds, 1819–1901: views of the natural system in 19th-century British ornithology.Robert J. O'Hara - 1988 - Acta XIX Congressus Internationalis Ornithologici: pp. 2746–2759.
    Classifications of animals and plants have long been represented by hierarchical lists of taxa, but occasional authors have drawn diagrammatic versions of their classifications in an attempt to better depict the "natural relationships" of their organisms. Ornithologists in 19th-century Britain produced and pioneered many types of classificatory diagrams, and these fall into three groups: (a) the quinarian systems of Vigors and Swainson (1820s and 1830s); (b) the "maps" of Strickland and Wallace (1840s and 1850s); and (c) the evolutionary diagrams of (...)
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  36.  2
    Enzymes for glycotechnology.Pierre F. Monsan - 2001 - Bioessays 23 (1):109-109.
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  37. Enzymes for glycotechnology.Pierre F. Monsan - 2001 - Bioessays 23 (1):109-109.
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  38.  3
    What deubiquitinating enzymes, oncogenes, and tumor suppressors actually do: Are current assumptions supported by patient outcomes?Sophie Gregoire-Mitha & Douglas A. Gray - 2021 - Bioessays 43 (4):2000269.
    Context can determine whether a given gene acts as an oncogene or a tumor suppressor. Deubiquitinating enzymes (DUBs) regulate the stability of many components of the pathways dictating cell fate so it would be expected that alterations in the levels or activity of these enzymes may have oncogenic or tumor suppressive consequences. In the current review we survey publications reporting that genes encoding DUBs are oncogenes or tumor suppressors. For many DUBs both claims have been made. For such “double agents,” (...)
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  39.  4
    Les enzymes: réalité expérimentale et implications physiologiques.Par François Widmer - 1982 - Dialectica 36 (1):91-98.
    RésuméĽenzymologie est une discipline scientifique apparue au debut du siècle dernier. Les techniques de plus en plus élaborées qui en ont depuis lors permis le développement, faisant appel à une rigueur expérimentale toujours plus évidente, pourraient suggérer un recul de la réalite biologique et physiologique au profit de modéles abstraits. La présentation de quelques exemples montre que ce point de vue n'est pas fondé.SummaryThe infancy of enzymology dates back to the beginning of the 19th century. The experimental techniques which have (...)
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  40. Defeasible Classifications and Inferences from Definitions.Fabrizio Macagno & Douglas Walton - 2010 - Informal Logic 30 (1):34-61.
    We contend that it is possible to argue reasonably for and against arguments from classifications and definitions, provided they are seen as defeasible (subject to exceptions and critical questioning). Arguments from classification of the most common sorts are shown to be based on defeasible reasoning of various kinds represented by patterns of logical reasoning called defeasible argumentation schemes. We show how such schemes can be identified with heuristics, or short-cut solutions to a problem. We examine a variety of arguments (...)
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  41.  14
    Enzymes and auxiliary factors for GPI lipid anchor biosynthesis and post‐translational transfer to proteins.Birgit Eisenhaber, Sebastian Maurer-Stroh, Maria Novatchkova, Georg Schneider & Frank Eisenhaber - 2003 - Bioessays 25 (4):367-385.
  42.  8
    Classification of Mammograms Using a Modular Neural Network.T. Cooley & E. Micheli-Tzanakou - 1998 - Journal of Intelligent Systems 8 (1-2):1-54.
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  43.  71
    A process theory of enzyme catalytic power – the interplay of science and metaphysics.Ross L. Stein - 2006 - Foundations of Chemistry 8 (1):3-29.
    Enzymes are protein catalysts of extraordinary efficiency, capable of bringing about rate enhancements of their biochemical reactions that can approach factors of 1020. Theories of enzyme catalysis, which seek to explain the means by which enzymes effect catalytic transformation of the substrate molecules on which they work, have evolved over the past century from the “lock-and-key” model proposed by Emil Fischer in 1894 to models that explicitly rely on transition state theory to the most recent theories that strive to (...)
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  44.  2
    Classification of desires in St. Thomas and in modern sociology..Henry Ignatius Smith - 1915 - [Washington, D.C.,: National capital press, inc.].
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  45.  47
    Metaphilosophical Classification. Talbutt - 1980 - Teaching Philosophy 3 (3):307-314.
  46. Information Classification on University Websites: A Two-Country Card Sort Study.Torkil Clemmensen and Morten Hertzum Ather Nawaz - 2013 - Iris 34.
     
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  47. Classification, Kinds, Taxonomic Stability, and Conceptual Change.Jaipreet Mattu & Jacqueline Anne Sullivan - forthcoming - Aggression and Violent Behavior.
    Scientists represent their world, grouping and organizing phenomena into classes by means of concepts. Philosophers of science have historically been interested in the nature of these concepts, the criteria that inform their application and the nature of the kinds that the concepts individuate. They also have sought to understand whether and how different systems of classification are related and more recently, how investigative practices shape conceptual development and change. Our aim in this paper is to provide a critical overview (...)
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  48. Classification and Artificial Dispositions.Andrew McFarland - 2023 - In William A. Bauer & Anna Marmodoro (eds.), Artificial Dispositions: Investigating Ethical and Metaphysical Issues. Bloomsbury. pp. 59-80.
    This chapter sketches a taxonomy of artificial dispositions where humans play a part in the triggering mechanisms for those dispositions’ manifestations, and those dispositions that require humans for certain kinds of manifestations to be sustained. Thus the way and extent to which a disposition will count as artificial will be a matter of degree. The chapter argues for adopting an approach from the literature on natural kinds, sometimes called an “epistemic” or “pragmatic” turn, and takes aim at a traditional criterion (...)
     
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  49. Proteins, Enzymes, Genes: The Interplay of Chemistry and Biology.Joseph S. Fruton - 2001 - Journal of the History of Biology 34 (2):413-415.
     
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  50.  1
    The Classification of Sciences in Mediaeval Jewish Philosophy.Harry Austryn Wolfson - 2022 - Hebrew Union College.
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