Results for 'Elser Justin'

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  1. The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses.Laurel Cooper, Ramona Walls, Justin Elser, Maria A. Gandolfo, Dennis W. Stevenson, Barry Smith & Others - 2013 - Plant and Cell Physiology 54 (2):1-23..
    The Plant Ontology (PO; http://www.plantontology.org/) is a publicly-available, collaborative effort to develop and maintain a controlled, structured vocabulary (“ontology”) of terms to describe plant anatomy, morphology and the stages of plant development. The goals of the PO are to link (annotate) gene expression and phenotype data to plant structures and stages of plant development, using the data model adopted by the Gene Ontology. From its original design covering only rice, maize and Arabidopsis, the scope of the PO has been expanded (...)
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  2. The Planteome Database: An Integrated Resource for Reference Ontologies, Plant Genomics and Phenomics.Laurel Cooper, Austin Meier, Marie-Angélique Laporte, Justin L. Elser, Chris Mungall, Brandon T. Sinn, Dario Cavaliere, Seth Carbon, Nathan A. Dunn, Barry Smith, Botong Qu, Justin Preece, Eugene Zhang, Sinisa Todorovic, Georgios Gkoutos, John H. Doonan, Dennis W. Stevenson, Elizabeth Arnaud & Pankaj Jaiswal - 2018 - Nucleic Acids Research 46 (D1):D1168–D1180.
    The Planteome project provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics data. The reference ontologies include the Plant Ontology, Plant Trait Ontology, and the Plant Experimental Conditions Ontology developed by the Planteome project, along with the Gene Ontology, Chemical Entities of Biological Interest, Phenotype and Attribute Ontology, and others. The project also provides (...)
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  3. Ontologies as Integrative Tools for Plant Science.Ramona Walls, Balaji Athreya, Laurel Cooper, Justin Elser, Maria A. Gandolfo, Pankaj Jaiswal, Christopher J. Mungall, Justin Preece, Stefan Rensing, Barry Smith & Dennis W. Stevenson - 2012 - American Journal of Botany 99 (8):1263–1275.
    Bio-ontologies are essential tools for accessing and analyzing the rapidly growing pool of plant genomic and phenomic data. Ontologies provide structured vocabularies to support consistent aggregation of data and a semantic framework for automated analyses and reasoning. They are a key component of the Semantic Web. This paper provides background on what bio-ontologies are, why they are relevant to botany, and the principles of ontology development. It includes an overview of ontologies and related resources that are relevant to plant science, (...)
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  4. The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species.Ramona Lynn Walls, Laurel Cooper, Justin Lee Elser, Maria Alejandra Gandolfo, Christopher J. Mungall, Barry Smith, Dennis William Stevenson & Pankaj Jaiswal - 2019 - Frontiers in Plant Science 10.
    The Plant Ontology (PO) is a community resource consisting of standardized terms, definitions, and logical relations describing plant structures and development stages, augmented by a large database of annotations from genomic and phenomic studies. This paper describes the structure of the ontology and the design principles we used in constructing PO terms for plant development stages. It also provides details of the methodology and rationale behind our revision and expansion of the PO to cover development stages for all plants, particularly (...)
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  5. The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses.Cooper Laurel, Walls Ramona, L. Elser, Justin Gandolfo, A. Maria, Stevenson Dennis, W. Smith, Barry Preece, Justin Athreya, Balaji Mungall, J. Christopher, Rensing Stefan & Others - 2012 - Plant and Cell Physiology.
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  6. A Plant Disease Extension of the Infectious Disease Ontology.Ramona Walls, Barry Smith, Elser Justin, Goldfain Albert & W. Stevenson Dennis - 2012 - In Proceedings of the Third International Conference on Biomedical Ontology (CEUR 897). pp. 1-5.
    Plants from a handful of species provide the primary source of food for all people, yet this source is vulnerable to multiple stressors, such as disease, drought, and nutrient deficiency. With rapid population growth and climate uncertainty, the need to produce crops that can tolerate or resist plant stressors is more crucial than ever. Traditional plant breeding methods may not be sufficient to overcome this challenge, and methods such as highOthroughput sequencing and automated scoring of phenotypes can provide significant new (...)
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  7. Proceeedings of the Third International Conference on Biomedical Ontology (CEUR 897).Walls Ramona, Smith Barry, Justin Elser, Albert Goldfain & W. Stevenson Dennis - 2012
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  8. The Plant Ontology: A Common Reference Ontology for Plants.L. Walls Ramona, D. Cooper Laurel, Elser Justin, W. Stevenson Dennis, Barry Smith, Mungall Chris, A. Gandolfo Maria & Jaiswal Pankaj - 2010 - In Proceedings of the Workshop on Bio-Ontologies, ISMB, Boston, July, 2010.
    The Plant Ontology (PO) (http://www.plantontology.org) (Jaiswal et al., 2005; Avraham et al., 2008) was designed to facilitate cross-database querying and to foster consistent use of plant-specific terminology in annotation. As new data are generated from the ever-expanding list of plant genome projects, the need for a consistent, cross-taxon vocabulary has grown. To meet this need, the PO is being expanded to represent all plants. This is the first ontology designed to encompass anatomical structures as well as growth and developmental stages (...)
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  9. Proceedings of the Workshop on Bio-Ontologies, ISMB, Boston, July, 2010.L. Walls Ramona, D. Cooper Laurel, Justin Elser, W. Stevenson Dennis, Smith Barry, Chris Mungall, A. Gandolfo Maria & Pankaj Jaiswal - 2010
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  10. Justin Clardy on Love and Relationships.Justin L. Clardy - 2019 - In Myisha Cherry (ed.), Unmuted: Conversations on Prejudice, Oppression, and Social Justice. pp. 242-247.
  11.  1
    Justin Sands: Hegelians in Heaven, but on Earth … Westphal’s Kierkegaardian Faith.Justin Sands - 2016 - Journal for the History of Modern Theology/Zeitschrift für Neuere Theologiegeschichte 23 (1):1-26.
    Merold Westphal’s new publication, Kierkegaard’s Concept of Faith, gives us an opportunity to explore the many ways in which Kierkegaard has influenced Westphal’s thinking as a whole. This present contribution seeks to show how Kierkegaard helps Westphal discover a concept of faith which holds no ‘reasonable’ foundation as it is entirely dependent upon two different aspects of revelation in tension with each other. Moreover, faith is seen as a willing assent by the believer, and thus it becomes a task and (...)
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  12.  91
    Symposium on Justin Remhof’s Nietzsche’s Constructivism: A Metaphysics of Material Objects.Justin Remhof - 2021 - Philosophia 49 (2):571-583.
    Symposium on Nietzsche's Constructivism (Routledge, 2018), replies to Adler, Cabrera, Doyle, Migotti, Sinhababu, Pedersen.
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  13. Early Christian Philosophers: Justin, Irenaeus, Clement of Alexandria, Tertullian Eric Osborn1.Irenaeus Justin - 2009 - In Graham Robert Oppy & Nick Trakakis (eds.), Medieval Philosophy of Religion: The History of Western Philosophy of Religion, Volume 2. Oxford University Press. pp. 3--187.
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  14.  3
    The Meaning of "If".Justin Khoo - 2022 - New York, USA: Oxford University Press.
    Despite its small stature, "if" occupies a central place both in everyday language and the philosophical lexicon. In allowing us to talk about hypothetical situations, "if" raises a host of thorny philosophical puzzles about language and logic. Addressing them requires tools from linguistics, logic, probability theory, and metaphysics. Justin Khoo uses these tools to navigate a maze of interconnected issues about conditionals, some of which include: the nature of linguistic communication, the relationship between logical and natural languages, and the (...)
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  15.  63
    Spinoza.Justin Steinberg & Valtteri Viljanen - 2021 - Cambridge: Polity.
    Benedict de Spinoza is one of the most controversial and enigmatic thinkers in the history of philosophy. His greatest work, Ethics (1677), developed a comprehensive philosophical system and argued that God and Nature are identical. His scandalous Theological-Political Treatise (1670) provoked outrage during his lifetime due to its biblical criticism, anticlericalism, and defense of the freedom to philosophize. Together, these works earned Spinoza a reputation as a singularly radical thinker. -/- In this book, Steinberg and Viljanen offer a concise and (...)
  16. Stoichiometry and the New Biology: The Future Is Now.James Elser & Andrew Hamilton - 2007 - PLoS Biology 5:181-183.
    The world is an untidy place, and the sciences—all of them—reflect this. One source of this untidiness is the relationship between levels of organization. Reducing macrolevels to microlevels—explaining the former in terms of the latter—has met with successes but has never been the whole story. In the biological sciences, there has been much attention lately to the shortcomings of reductionism on the grounds that (i) it changes the subject rather than explaining, (ii) it leads to a myopically molecular view of (...)
     
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  17.  8
    Nietzsche as Metaphysician.Justin Remhof - 2022 - New York: Routledge.
    This book defends the controversial view that Nietzsche is a metaphysician against a tendency to sever Nietzsche from metaphysical philosophy. It shows that for Nietzsche the questions, answers, methods, and subject matters of metaphysics are not only perfectly legitimate, but also crucial for understanding the world and our place within it.
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  18.  33
    Epistemology After Sextus Empiricus.Justin Vlasits & Katja Maria Vogt (eds.) - 2020 - New York, USA: Oxford University Press.
    Sextus Empiricus was the voice of ancient Greek skepticism for posterity. His writings contain the most subtle and detailed versions of the ancient skeptical arguments known as Pyrrhonism, adding up to a distinctive philosophical approach. Instead of viewing philosophy as valuable because of the answers it gives to important questions, Sextus considered the search for answers itself to be fundamental and offered a philosophy centered on inquiry. Assuming the point of view of an active inquirer, Sextus developed arguments concerning conflicting (...)
  19. The First Riddle of Induction : Sextus Empiricus and the Formal Learning Theorists.Justin Vlasits - 2020 - In Justin Vlasits & Katja Maria Vogt (eds.), Epistemology after Sextus Empiricus. Oxford University Press.
     
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  20.  19
    The Biological Mind: A Philosophical Introduction.Justin Garson - 2015 - London: Routledge.
    For some, biology explains all there is to know about the mind. Yet many big questions remain: is the mind shaped by genes or the environment? If mental traits are the result of adaptations built up over thousands of years, as evolutionary psychologists claim, how can such claims be tested? If the mind is a machine, as biologists argue, how does it allow for something as complex as human consciousness? The Biological Mind: A Philosophical Introduction explores these questions and more, (...)
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  21.  30
    Contrastive Reasons.Justin Snedegar - 2017 - Oxford University Press.
    Justin Snedegar develops and defends contrastivism about reasons. This is the view that normative reasons are fundamentally reasons for or against actions or attitudes only relative to sets of alternatives. Simply put, reasons are always reasons to do one thing rather than another, instead of simply being reasons to do something, full stop.
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  22. Fear, Deeds, and the Roots of Human Difference: A Divine Breath From Al-Qūnawī's Nafaḥāt.Justin Cancelliere - 2022 - In Mohammed Rustom, William C. Chittick & Sachiko Murata (eds.), Islamic thought and the art of translation: texts and studies in honor of William C. Chittick and Sachiko Murata. Brill.
     
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  23. Subtweeting in the End Times : Social Media and the Escalation to Extremes.Justin Lee - 2021 - In Ryan G. Duns & T. Derrick Witherington (eds.), René Girard, theology, and pop culture / [edited by] Ryan G. Duns and T. Derrick Witherington. Lexington Books/Fortress Academic.
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  24. Gabriel Daniel : Descartes Through the Mirror of Fiction.Justin E. H. Smith - 2019 - In Steven Nadler, Tad M. Schmaltz & Delphine Antoine-Mahut (eds.), The Oxford Handbook of Descartes and Cartesianism. Oxford University Press.
     
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  25. Saving One Another: Philodemus and Paul on Moral Formation in Community.Justin Reid Allison - 2020 - Boston: BRILL.
    In "Saving One Another: Philodemus and Paul on Moral Formation in Community" Justin Reid Allison compares how the Epicurean philosopher Philodemus and the Christian apostle Paul envisioned the members of their communities helping one another to grow into moral maturity. Allison establishes that Philodemus and Paul are more similar than previously noticed in their conception and practice of moral formation in community, and that these similarities offer a critical opportunity to consider important differences between the two as well. By (...)
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  26. Virtue Ethics and Professional Roles.Justin Oakley & Dean Cocking - 2001 - Cambridge University Press.
    Professionals, it is said, have no use for simple lists of virtues and vices. The complexities and constraints of professional roles create peculiar moral demands on the people who occupy them, and traits that are vices in ordinary life are praised as virtues in the context of professional roles. Should this disturb us, or is it naive to presume that things should be otherwise? Taking medical and legal practice as key examples, Justin Oakley and Dean Cocking develop a rigorous (...)
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  27.  45
    Grandstanding: The Use and Abuse of Moral Talk.Justin Tosi & Brandon Warmke - 2020 - New York: Oxford University Press.
    We are all guilty of it. We call people terrible names in conversation or online. We vilify those with whom we disagree, and make bolder claims than we could defend. We want to be seen as taking the moral high ground not just to make a point, or move a debate forward, but to look a certain way--incensed, or compassionate, or committed to a cause. We exaggerate. In other words, we grandstand. Nowhere is this more evident than in public discourse (...)
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  28. Why God Must Do What is Best: A Philosophical Investigation of Theistic Optimism.Justin J. Daeley - 2021 - New York, NY, USA: Bloomsbury Academic.
    The idea that God, understood as the most perfect being, must create the best possible world is often underacknowledged by contemporary theologians and philosophers of religion. This book clearly demonstrates the rationale for what Justin Daeley calls Theistic Optimism and interacts with the existing literature in order to highlight its limitations. While locating Theistic Optimism in the thought of Gottfried Leibniz, Daeley argues that Theistic Optimism is consistent with divine freedom, aseity, gratitude, and our typical modal intuitions. By offering (...)
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  29.  55
    A Critical Overview of Biological Functions.Justin Garson - 2016 - Dordrecht: Springer.
    This book is a critical survey of and guidebook to the literature on biological functions. It ties in with current debates and developments, and at the same time, it looks back on the state of discourse in naturalized teleology prior to the 1970s. It also presents three significant new proposals. First, it describes the generalized selected effects theory, which is one version of the selected effects theory, maintaining that the function of a trait consists in the activity that led to (...)
  30. The Benefits of Music Engagement Projects on Young People : A Music and Education Perspective.Justin Boreland & Eleanor Peters - 2023 - In Eleanor Peters (ed.), Music in crime, resistance, and identity. Routledge.
     
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  31.  5
    Luther's Tears: Hagar and the Limits of Empathy.Ashleigh Elser - 2022 - Studies in Christian Ethics 35 (3):471-485.
    In his Enarrationes in Genesin, Martin Luther finds stories of suffering he can ‘hardly read with dry eyes’. Recent scholars attribute profound ethical value to Luther's tears, especially those shed over the suffering of female characters. This article reconsiders the ethical salience of Luther's tears as a demonstration of interpretive empathy by examining his reading of Hagar and its modern reception history. By comparing Luther's reading of the enslaved Hagar to his reading of her master Abraham, it is argued that (...)
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  32.  10
    Beyond Fake News: Finding the Truth in a World of Misinformation.Justin P. McBrayer - 2020 - New York, NY, USA: Routledge.
    The world is swimming in misinformation. Conflicting messages bombard us every day with news on everything from politics and world events to investments and alternative health. The daily paper, nightly news, websites, and social media each compete for our attention and each often insist on a different version of the facts. Inevitably, we have questions: Who is telling the truth? How would we know? How did we get here? What can we do? Beyond Fake News answers these and other queries. (...)
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  33.  19
    The Theory and Practice of Experimental Philosophy.Justin Sytsma & Jonathan Livengood - 2015 - Broadview Press.
    In recent years, developments in experimental philosophy have led many thinkers to reconsider their central assumptions and methods. It is not enough to speculate and introspect from the armchair - philosophers must subject their claims to scientific scrutiny, looking at evidence and in some cases conducting new empirical research. "The Theory and Practice of Experimental Philosophy" is an introduction and guide to the systematic collection and analysis of empirical data in academic philosophy. This book serves two purposes: first, it examines (...)
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  34.  9
    The Mermin Fixed Point.Veit Elser - 2003 - Foundations of Physics 33 (11):1691-1698.
    The most efficient known method for solving certain computational problems is to construct an iterated map whose fixed points are by design the problem's solution. Although the origins of this idea go back at least to Newton, the clearest expression of its logical basis is an example due to Mermin. A contemporary application in image recovery demonstrates the power of the method.
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  35. Value Judgements and the Estimation of Uncertainty in Climate Modeling.Justin Biddle & Eric Winsberg - 2010 - In P. D. Magnus & Jacob Busch (eds.), New Waves in Philosophy of Science. Palgrave-Macmillan. pp. 172--197.
  36.  69
    The Life of the Party: A Brief Note on Nietzsche’s Ethics.Justin Clemens - 2009 - Filozofski Vestnik 30 (2).
    As a philologist, Nietzsche had to be a materialist – a materialist of letters. If letters are not life, however, they are the indices of its limits. You can’t live except at the limit; to get to a limit, you have to reconstruct a genealogy for yourself; once you know where you are, you have the opportunity to lose yourself again, this time effectively. Life is whatever will have greeted you in that loss, the disappearance at the limit.
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  37.  2
    Die Lehre des Aristoteles Uber Das Wirken Gottes.K. Elser - 1894 - Philosophical Review 3:382.
  38. Epistemic Corruption and Manufactured Doubt: The Case of Climate Science.Justin B. Biddle, Anna Leuschner & Ian James Kidd - 2017 - Public Affairs Quarterly 31 (3):165-187.
    Criticism plays an essential role in the growth of scientific knowledge. In some cases, however, criticism can have detrimental effects; for example, it can be used to ‘manufacture doubt’ for the purpose of impeding public policy making on issues such as tobacco consumption and greenhouse gas emissions (e.g., Oreskes & Conway 2010). In this paper, we build on previous work by Biddle and Leuschner (2015) who argue that criticism that meets certain conditions can be epistemically detrimental. We extend and refine (...)
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  39.  74
    What Biological Functions Are and Why They Matter.Justin Garson - 2019 - New York: Cambridge University Press.
    The biological functions debate is a perennial topic in the philosophy of science. In the first full-length account of the nature and importance of biological functions for many years, Justin Garson presents an innovative new theory, the 'generalized selected effects theory of function', which seamlessly integrates evolutionary and developmental perspectives on biological functions. He develops the implications of the theory for contemporary debates in the philosophy of mind, the philosophy of medicine and psychiatry, the philosophy of biology, and biology (...)
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  40.  85
    Imitation, Mirror Neurons and Autism.Justin H. G. Williams, Andrew Whiten, Thomas Suddendorf & David I. Perrett - unknown
    Various deficits in the cognitive functioning of people with autism have been documented in recent years but these provide only partial explanations for the condition. We focus instead on an imitative disturbance involving difficulties both in copying actions and in inhibiting more stereotyped mimicking, such as echolalia. A candidate for the neural basis of this disturbance may be found in a recently discovered class of neurons in frontal cortex, 'mirror neurons' (MNs). These neurons show activity in relation both to specific (...)
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  41. Contemporary Psychology's Use in Eastern-Christian Pastoral Ministry: Psychotherapeutic Approaches to the Cure of Souls.Justin McDonnell - 2017 - The Australasian Catholic Record 94 (2):210.
    McDonnell, Justin The psychologist wishes to balance man psychologically. The spiritual father aims at his divinisation... the psychologist employs the method of questioning and listening and tries to make man aware of his problem and to mature psychologically. The spiritual father, illumined by the grace of God, locates the problem-which is the darkness of the nous-and tries to lead man to the theoria of God by the means of the Orthodox method of purification and illumination. The psychologist acts anthropocentrically (...)
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  42.  1
    Pauling's Revenge.Veit Elser - 2008 - Philosophical Magazine 88 (13-15):1883-1885.
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  43. C. S. Lewis on Politics and the Natural Law.Justin Buckley Dyer & Micah J. Watson - 2016 - Cambridge University Press.
    Conventional wisdom holds that C. S. Lewis was uninterested in politics and public affairs. The conventional wisdom is wrong. As Justin Buckley Dyer and Micah J. Watson show in this groundbreaking work, Lewis was deeply interested in the fundamental truths and falsehoods about human nature and how these conceptions manifest themselves in the contested and turbulent public square. Ranging from the depths of Lewis' philosophical treatments of epistemology and moral pedagogy to practical considerations of morals legislation and responsible citizenship, (...)
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  44.  47
    Ecological Historicity, Functional Goals, and Novelty in the Anthropocene.Justin Donhauser, Eric Desjardins & Gillian Barker - 2018 - Environmental Values.
    While many recognize that rigid historical and compositional goals are inadequate in a world where climate and other global systems are undergoing unprecedented changes, others contend that promoting ecosystem services and functions encourages practices that can ultimately lower the bar of ecological management. These worries are foregrounded in discussions about Novel Ecosystems (NEs); where some researchers and conservationists claim that NEs provide a license to trash nature as long as some ecosystem services are provided. This criticism arises from what we (...)
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  45. Moral Grandstanding.Justin Tosi & Brandon Warmke - 2016 - Philosophy and Public Affairs 44 (3):197-217.
    Moral grandstanding is a pervasive feature of public discourse. Many of us can likely recognize that we have engaged in grandstanding at one time or another. While there is nothing new about the phenomenon of grandstanding, we think that it has not received the philosophical attention it deserves. In this essay, we provide an account of moral grandstanding as the use of public discourse for moral self-promotion. We then show that our account, with support from some standard theses of social (...)
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  46.  9
    The Moment Of Faith: Against Relativism Through A Reinterpretation Of The Story Of Abraham.Justin M. Zyla - 2014 - Journal for the Study of Religions and Ideologies 13 (39):45-67.
    In the United States, it is common for people entering christian organizations to receive explanation of what the Bible means before being handed the book and asked to read. Religious ideological transfer stems from this strict codification, and the Story of Abraham highlights the effective blending between original text and interpretation. Recognizing how the Story of Abraham calls for, as Kierkegaard suggested, a suspension of the ethical for obedience, it justifies entrance into a religious state of exception, a fully subjective (...)
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  47. An Episodic Account of Divine Personhood.Justin Mooney - forthcoming - Religious Studies.
    I present Ned Markosian's episodic account of identity under a sortal, and then use it to sketch a new model of the Trinity. I show that the model can be used to solve at least three important Trinitarian puzzles: the traditional ‘logical problem of the Trinity’, a less-discussed problem that has been dubbed the ‘problem of triunity’, and a problem about the divine processions that has been enjoying increased attention in the recent literature.
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  48. The Autonomy of Colour.Justin Broackes - 1992 - In K. Lennon & D. Charles (eds.), Reduction, Explanation, and Realism. Oxford University Press. pp. 191-225.
    This essay* takes two notions of autonomy and two notions of explanation and argues that colours occur in explanations that fall under all of them. The claim that colours can be used to explain anything at all may seem to some people an outrage. But their pessimism is unjustified and the orthodox dispositional view which may seem to support it, I shall argue, itself has difficulties. In broad terms, Section 2 shows that there exist good straight scientific laws of colour, (...)
     
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  49.  23
    Mālobā, the Marāthā SaintMaloba, the Maratha Saint.Justin E. Abbott - 1920 - Journal of the American Oriental Society 40:300.
  50.  4
    Madness: A Philosophical Exploration.Justin Garson - 2022 - Oxford University Press.
    Since the time of Hippocrates, madness has typically been viewed through the lens of disease, dysfunction, and defect. In 'Madness', philosopher of science Justin Garson presents a radically different paradigm for conceiving of madness and the forms that it takes. In this paradigm, which he calls madness-as-strategy, madness is neither a disease nor a defect, but a designed feature, like the heart or lungs.
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