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Stanford Encyclopedia of Philosophy (2010)

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  1. Scientific enquiry and natural kinds: from planets to mallards.P. D. Magnus - 2012 - New York, NY: Palgrave-Macmillan.
    Some scientific categories seem to correspond to genuine features of the world and are indispensable for successful science in some domain; in short, they are natural kinds. This book gives a general account of what it is to be a natural kind and puts the account to work illuminating numerous specific examples.
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  • Species.Philip Kitcher - 1984 - Philosophy of Science 51 (2):308-333.
    I defend a view of the species category, pluralistic realism, which is designed to do justice to the insights of many different groups of systematists. After arguing that species are sets and not individuals, I proceed to outline briefly some defects of the biological species concept. I draw the general moral that similar shortcomings arise for other popular views of the nature of species. These shortcomings arise because the legitimate interests of biology are diverse, and these diverse interests are reflected (...)
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  • How to be a chaste species pluralist-realist: The origins of species modes and the synapomorphic species concept.John S. Wilkins - 2003 - Biology and Philosophy 18 (5):621-638.
    The biological species (biospecies) concept applies only to sexually reproducing species, which means that until sexual reproduction evolved, there were no biospecies. On the universal tree of life, biospecies concepts therefore apply only to a relatively small number of clades, notably plants andanimals. I argue that it is useful to treat the various ways of being a species (species modes) as traits of clades. By extension from biospecies to the other concepts intended to capture the natural realities of what keeps (...)
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  • Species, Genes, and the Tree of Life.Joel D. Velasco - 2010 - British Journal for the Philosophy of Science 61 (3):599-619.
    A common view is that species occupy a unique position on the Tree of Life. Evaluating this claim requires an understanding of what the Tree of Life represents. The Tree represents history, but there are at least three biological levels that are often said to have genealogies: species, organisms, and genes. Here I focus on defending the plausibility of a gene-based account of the Tree. This leads to an account of species that are determined by gene genealogies. On this view, (...)
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  • Darwin and the Nature of Species.David N. Stamos - 2006 - State University of New York Press.
    Examines Darwin’s concept of species in a philosophical context.
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  • Evolution, population thinking, and essentialism.Elliott Sober - 1980 - Philosophy of Science 47 (3):350-383.
    Ernst Mayr has argued that Darwinian theory discredited essentialist modes of thought and replaced them with what he has called "population thinking". In this paper, I characterize essentialism as embodying a certain conception of how variation in nature is to be explained, and show how this conception was undermined by evolutionary theory. The Darwinian doctrine of evolutionary gradualism makes it impossible to say exactly where one species ends and another begins; such line-drawing problems are often taken to be the decisive (...)
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  • How to Incorporate Non-Epistemic Values into a Theory of Classification.Thomas A. C. Reydon & Marc Ereshefsky - 2022 - European Journal for Philosophy of Science 12 (1):1-28.
    Non-epistemic values play important roles in classificatory practice, such that philosophical accounts of kinds and classification should be able to accommodate them. Available accounts fail to do so, however. Our aim is to fill this lacuna by showing how non-epistemic values feature in scientific classification, and how they can be incorporated into a philosophical theory of classification and kinds. To achieve this, we present a novel account of kinds and classification, discuss examples from biological classification where non-epistemic values play decisive (...)
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  • Species as family resemblance concepts: the (dis-)solution of the species problem?Massimo Pigliucci - 2003 - Bioessays 25 (6):596-602.
    The so-called ‘‘species problem’’ has plagued evolution- ary biology since before Darwin’s publication of the aptly titled Origin of Species. Many biologists think the problem is just a matter of semantics; others complain that it will not be solved until we have more empirical data. Yet, we don’t seem to be able to escape discussing it and teaching seminars about it. In this paper, I briefly examine the main themes of the biological and philosophical liter- atures on the species problem, (...)
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  • Origin Essentialism in Biology.Makmiller Pedroso - 2014 - Philosophical Quarterly 64 (254):60-81.
    Kripke argues for origin essentialism, the view that the same individual cannot have multiple origins. Sober hypothesises that Kripke's origin essentialism applies to biological species. This paper shows that Sober's hypothesis fails. Because Kripke's original argument is invalid, it cannot vindicate Sober's proposal. Salmon offers an influential reformulation of Kripke's argument but his argument fails to extend to species: the notion of an individual's origin is too narrow to apply to species, and Salmon's argument rests on a thought experiment that (...)
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  • Darwinian metaphysics: Species and the question of essentialism.Samir Okasha - 2002 - Synthese 131 (2):191-213.
    Biologists and philosophers of biology typically regard essentialism about speciesas incompatible with modern Darwinian theory. Analytic metaphysicians such asKripke, Putnam and Wiggins, on the other hand, believe that their essentialist thesesare applicable to biological kinds. I explore this tension. I show that standard anti-essentialist considerations only show that species do not have intrinsic essential properties. I argue that while Putnam and Kripke do make assumptions that contradict received biological opinion, their model of natural kinds, suitably modified, is partially applicable to (...)
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  • Evolution without Species: The Case of Mosaic Bacteriophages.Gregory J. Morgan & W. Brad Pitts - 2008 - British Journal for the Philosophy of Science 59 (4):745-765.
    Recent work in viral genomics has shown that bacteriophages exhibit a high degree of mosaicism, which is most likely due to a long history of prolific horizontal gene transfer (HGT). Given these findings, we argue that each of the most plausible attempts to properly classify bacteriophages into distinct species fail. Mayr's biological species concept fails because there is no useful viral analog to sexual reproduction. Phenetic species concepts fail because they obscure the mosaicism and the rich reticulated viral histories. Phylogenetic (...)
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  • The Hunting of the SNaRC: A Snarky Solution to the Species Problem.Brent D. Mishler & John S. Wilkins - 2018 - Philosophy, Theory, and Practice in Biology 10 (1).
    We argue that the logical outcome of the cladistics revolution in biological systematics, and the move towards rankless phylogenetic classification of nested monophyletic groups as formalized in the PhyloCode, is to eliminate the species rank along with all the others and simply name clades. We propose that the lowest level of formally named clade be the SNaRC, the Smallest Named and Registered Clade. The SNaRC is an epistemic level in the classification, not an ontic one. Naming stops at that level (...)
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  • Individuality, pluralism, and the phylogenetic species concept.Brent D. Mishler & Robert N. Brandon - 1987 - Biology and Philosophy 2 (4):397-414.
    The concept of individuality as applied to species, an important advance in the philosophy of evolutionary biology, is nevertheless in need of refinement. Four important subparts of this concept must be recognized: spatial boundaries, temporal boundaries, integration, and cohesion. Not all species necessarily meet all of these. Two very different types of pluralism have been advocated with respect to species, only one of which is satisfactory. An often unrecognized distinction between grouping and ranking components of any species concept is necessary. (...)
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  • Ontological Choices and the Value-Free Ideal.David Ludwig - 2015 - Erkenntnis (6):1-20.
    The aim of this article is to argue that ontological choices in scientific practice undermine common formulations of the value-free ideal in science. First, I argue that the truth values of scientific statements depend on ontological choices. For example, statements about entities such as species, race, memory, intelligence, depression, or obesity are true or false relative to the choice of a biological, psychological, or medical ontology. Second, I show that ontological choices often depend on non-epistemic values. On the basis of (...)
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  • Species, essence and explanation.Tim Lewens - 2012 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 43 (4):751-757.
    Michael and has argued that species have intrinsic essences. This paper rebuts Devitt’s arguments, but in so doing it shores up the anti-essentialist consensus in two ways that have more general interest. First, species membership can be explanatory even when species have no essences; that is, Tamsin’s membership of the tiger species can explain her stripyness, without this committing us to any further claim about essential properties of tigers. Second, even the views of species that appear most congenial to essentialism—namely (...)
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  • The myth of bacterial species and speciation.Jeffrey G. Lawrence & Adam C. Retchless - 2010 - Biology and Philosophy 25 (4):569-588.
    The Tree of Life hypothesis frames the evolutionary process as a series of events whereby lineages diverge from one another, thus creating the diversity of life as descendent lineages modify properties from their ancestors. This hypothesis is under scrutiny due to the strong evidence for lateral gene transfer between distantly related bacterial taxa, thereby providing extant taxa with more than one parent. As a result, one argues, the Tree of Life becomes confounded as the original branching structure is gradually superseded (...)
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  • The effect of essentialism on taxonomy—two thousand years of stasis.David L. Hull - 1965 - British Journal for the Philosophy of Science 16 (61):1-18.
  • Genealogical Actors in Ecological Roles.David L. Hull - 1987 - Biology and Philosophy 2 (2):168-184.
  • A matter of individuality.David L. Hull - 1978 - Philosophy of Science 45 (3):335-360.
    Biological species have been treated traditionally as spatiotemporally unrestricted classes. If they are to perform the function which they do in the evolutionary process, they must be spatiotemporally localized individuals, historical entities. Reinterpreting biological species as historical entities solves several important anomalies in biology, in philosophy of biology, and within philosophy itself. It also has important implications for any attempt to present an "evolutionary" analysis of science and for sciences such as anthropology which are devoted to the study of single (...)
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  • The individuality thesis (3 ways).Matthew H. Haber - 2016 - Biology and Philosophy 31 (6):913-930.
    I spell out and update the individuality thesis, that species are individuals, and not classes, sets, or kinds. I offer three complementary presentations of this thesis. First, as a way of resolving an inconsistent triad about natural kinds; second, as a phylogenetic systematics theoretical perspective; and, finally, as a novel recursive account of an evolved character. These approaches do different sorts of work, serving different interests. Presenting them together produces a taxonomy of the debates over the thesis, and isolates ways (...)
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  • Species in the Age of Discordance.Matthew H. Haber - 2019 - Philosophy, Theory, and Practice in Biology 11 (21).
    Biological lineages move through time, space, and each other. As they do, they diversify, diverge, and grade away from and into one another. One result of this is genealogical discordance; i.e., the lineages of a biological entity may have different histories. We see this on numerous levels, from microbial networks, to holobionts, to population-level lineages. This paper considers how genealogical discordance impacts our study of species. More specifically, I consider this in the context of three framing questions: (1) How, if (...)
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  • Species concepts, individuality, and objectivity.Michael Ghiselin - 1987 - Biology and Philosophy 2 (2):127-43.
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  • Bacteria, sex, and systematics.L. R. Franklin - 2007 - Philosophy of Science 74 (1):69-95.
    Philosophical discussions of species have focused on multicellular, sexual animals and have often neglected to consider unicellular organisms like bacteria. This article begins to fill this gap by considering what species concepts, if any, apply neatly to the bacterial world. First, I argue that the biological species concept cannot be applied to bacteria because of the variable rates of genetic transfer between populations, depending in part on which gene type is prioritized. Second, I present a critique of phylogenetic bacterial species, (...)
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  • Species pluralism and anti-realism.Marc Ereshefsky - 1998 - Philosophy of Science 65 (1):103-120.
    Species pluralism gives us reason to doubt the existence of the species category. The problem is not that species concepts are chosen according to our interests or that pluralism and the desire for hierarchical classifications are incompatible. The problem is that the various taxa we call 'species' lack a common unifying feature.
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  • Taxonomy, Polymorphism, and History: An Introduction to Population Structure Theory.Marc Ereshefsky & Mohan Matthen - 2005 - Philosophy of Science 72 (1):1-21.
    Homeostatic Property Cluster (HPC) theory suggests that species and other biological taxa consist of organisms that share certain similarities. HPC theory acknowledges the existence of Darwinian variation within biological taxa. The claim is that “homeostatic mechanisms” acting on the members of such taxa nonetheless ensure a significant cluster of similarities. The HPC theorist’s focus on individual similarities is inadequate to account for stable polymorphism within taxa, and fails properly to capture their historical nature. A better approach is to treat distributions (...)
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  • Microbiology and the species problem.Marc Ereshefsky - 2010 - Biology and Philosophy 25 (4):553-568.
    This paper examines the species problem in microbiology and its implications for the species problem more generally. Given the different meanings of ‘species’ in microbiology, the use of ‘species’ in biology is more multifarious and problematic than commonly recognized. So much so, that recent work in microbial systematics casts doubt on the existence of a prokaryote species category in nature. It also casts doubt on the existence of a general species category for all of life (one that includes both prokaryotes (...)
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  • The Disorder of Things: Metaphysical Foundations of the Disunity of Science.John Dupré - 1993 - Harvard University Press.
    With this manifesto, John Dupré systematically attacks the ideal of scientific unity by showing how its underlying assumptions are at odds with the central conclusions of science itself.
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  • In defence of classification.John Dupré - 2001 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 32 (2):203-219.
    It has increasingly been recognised that units of biological classification cannot be identified with the units of evolution. After briefly defending the necessity of this distinction I argue, contrary to the prevailing orthodoxy, that species should be treated as the fundamental units of classification and not, therefore, as units of evolution. This perspective fits well with the increasing tendency to reject the search for a monistic basis of classification and embrace a pluralistic and pragmatic account of the species category. It (...)
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  • Speciation without Species: A Final Word.W. Ford Doolittle - 2019 - Philosophy, Theory, and Practice in Biology 11.
    This paper, like many before it, aims to solve the “species problem” by declaring it a non-problem. It borrows its title from an earlier article by Jeff Lawrence and its philosophical concepts from Marc Ereshefsky, John Dupré, Peter Godfrey-Smith, Ken Waters, and Jody Hey. The emphasis is on bacteria, but my pragmatic species anti-realist conclusion may be a general one.
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  • Resurrecting biological essentialism.Michael Devitt - 2008 - Philosophy of Science 75 (3):344-382.
    The article defends the doctrine that Linnaean taxa, including species, have essences that are, at least partly, underlying intrinsic, mostly genetic, properties. The consensus among philosophers of biology is that such essentialism is deeply wrong, indeed incompatible with Darwinism. I argue that biological generalizations about the morphology, physiology, and behavior of species require structural explanations that must advert to these essential properties. The objection that, according to current “species concepts,” species are relational is rejected. These concepts are primarily concerned with (...)
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  • Defending Intrinsic Biological Essentialism.Michael Devitt - 2021 - Philosophy of Science 88 (1):67-82.
    In “Resurrecting Biological Essentialism,” I went against the consensus in the philosophy of biology by arguing that a Linnaean taxon, including a species, has an essence that is, at least partly,...
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  • Different species problems and their resolution.Kevin de Queiroz - 2005 - Bioessays 27 (12):1263-1269.
    At least three different issues are commonly referred to by the term “the species problem”: one concerns the necessary properties of species, a second the processes responsible for the existence of species, and a third methods for inferring species limits. Solutions have recently been proposed to the first two problems, which are conceptual in nature (the third is methodological). The first equates species with metapopulation lineages and proposes that existence as a separately evolving metapopulation lineage be considered the only necessary (...)
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  • On the metaphysics of species.Judith K. Crane - 2004 - Philosophy of Science 71 (2):156-173.
    This paper explains the metaphysical implications of the view that species are individuals (SAI). I first clarify SAI in light of the separate distinctions between individuals and classes, particulars and universals, and abstract and concrete things. I then show why the standard arguments given in defense of SAI are not compelling. Nonetheless, the ontological status of species is linked to the traditional "species problem," in that certain species concepts do entail that species are individuals. I develop the idea that species (...)
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  • Radical pluralism, classificatory norms and the legitimacy of species classifications.Stijn Conix - 2019 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 73:27-34.
    Moderate pluralism is a popular position in contemporary philosophy of biology. Despite its popularity, various authors have argued that it tends to slide off off into a radical form of pluralism that is both normatively and descriptively ueptable. This paper looks at at the case of biological species classification, and evaluates a popular way of avoiding radical pluralism by relying on the shared aims and norms of a discipline. The main contention is that while these aims and norms may play (...)
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  • When Traditional Essentialism Fails: Biological Natural Kinds.Robert A. Wilson, Matthew J. Barker & Ingo Brigandt - 2007 - Philosophical Topics 35 (1-2):189-215.
    Essentialism is widely regarded as a mistaken view of biological kinds, such as species. After recounting why (sections 2-3), we provide a brief survey of the chief responses to the “death of essentialism” in the philosophy of biology (section 4). We then develop one of these responses, the claim that biological kinds are homeostatic property clusters (sections 5-6) illustrating this view with several novel examples (section 7). Although this view was first expressed 20 years ago, and has received recent discussion (...)
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  • Species pluralism does not imply species eliminativism.Ingo Brigandt - 2003 - Philosophy of Science 70 (5):1305-1316.
    Marc Ereshefsky argues that pluralism about species suggests that the species concept is not theoretically useful. It is to be abandoned in favor of several concrete species concepts that denote real categories. While accepting species pluralism, the present paper rejects eliminativism about the species category. It is argued that the species concept is important and that it is possible to make sense of a general species concept despite the existence of different concrete species concepts.
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  • Kinds, Complexity and Multiple realization.Richard Boyd - 1999 - Philosophical Studies 95 (1-2):67-98.
  • Specious intrinsicalism.Matthew J. Barker - 2010 - Philosophy of Science 77 (1):73-91.
    Over the last 2,300 years or so, many philosophers have believed that species are individuated by essences that are at least in part intrinsic. Psychologists tell us most folks also believe this view. But most philosophers of biology have abandoned the view, in light of evolutionary conceptions of species. In defiance, Michael Devitt has attempted in this journal to resurrect a version of the view, which he calls Intrinsic Biological Essentialism. I show that his arguments for the resurrection fail, and (...)
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  • Species and Other Evolving Lineages as Feedback Systems.Matthew J. Barker - 2019 - Philosophy, Theory, and Practice in Biology 11.
    This paper proposes a new and testable view about the nature of species and other evolving lineages, according to which they are feedback systems. On this view, it is a mistake to think gene flow, niche sharing, and trait frequency similarities between populations are among variables that interact to cause some further downstream variable that distinguishes evolving lineages from each other, some sort of “species cohesion” for example. Instead, gene flow, niche sharing, similarities between populations, and other causal variables feed (...)
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  • Eliminative Pluralism and Integrative Alternatives: The Case of Species.Matthew J. Barker - 2019 - British Journal for the Philosophy of Science 70 (3):657-681.
    Pluralisms of various sorts are popular in philosophy of science, including those that imply some scientific concept x should be eliminated from science in favour of a plurality of concepts x1, x2, … xn. This article focuses on influential and representative arguments for such eliminative pluralism about the concept species. The main conclusions are that these arguments fail, that all other extant arguments also fail, and that this reveals a quite general dilemma, one that poses a defeasible presumption against many (...)
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  • Cohesion, Gene flow, and the Nature of Species.Matthew J. Barker & Robert A. Wilson - 2010 - Journal of Philosophy 107 (2):59-77.
    A far-reaching and influential view in evolutionary biology claims that species are cohesive units held together by gene flow. Biologists have recognized empirical problems facing this view; after sharpening the expression of the view, we present novel conceptual problems for it. At the heart of these problems is a distinction between two importantly different concepts of cohesion, what we call integrative and response cohesion. Acknowledging the distinction problematizes both the explanandum of species cohesion and the explanans of gene flow that (...)
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  • Adapting Minds: Evolutionary Psychology and the Persistent Quest for Human Nature.David J. Buller - 2006 - Bradford.
    Was human nature designed by natural selection in the Pleistocene epoch? The dominant view in evolutionary psychology holds that it was -- that our psychological adaptations were designed tens of thousands of years ago to solve problems faced by our hunter-gatherer ancestors. In this provocative and lively book, David Buller examines in detail the major claims of evolutionary psychology -- the paradigm popularized by Steven Pinker in The Blank Slate and by David Buss in The Evolution of Desire -- and (...)
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  • The Triumph of the Darwinian Method.Michael T. Ghiselin - 1969 - University of California Press.
    A coherent treatment of the flow of ideas throughout Darwin's works, this volume presents a unified theoretical system that explains Darwin's investigations, evaluating the literature from a historical, scientific, and philosophical perspective.
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  • Philosophy of Microbiology.Maureen O'Malley - 2014 - Cambridge University Press.
    Microbes and microbiology are seldom encountered in philosophical accounts of the life sciences. Although microbiology is a well-established science and microbes the basis of life on this planet, neither the organisms nor the science have been seen as philosophically significant. This book will change that. It fills a major gap in the philosophy of biology by examining central philosophical issues in microbiology. Topics are drawn from evolutionary microbiology, microbial ecology, and microbial classification. These discussions are aimed at philosophers and scientists (...)
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  • An Essay Concerning Human Understanding. To Which Are Now Added, I. Analysis of Mr. Locke's Doctrine of Ideas [&C.].John Locke - 1818
  • The Growth of Biological Thought: Diversity, Evolution, and Inheritance.Ernst Mayr - 1982 - Harvard University Press.
    Explores the development of the ideas of evolutionary biology, particularly as affected by the increasing understanding of genetics and of the chemical basis of inheritance.
  • Science as a Process: An Evolutionary Account of the Social and Conceptual Development of Science.David L. Hull - 1988 - University of Chicago Press.
    "Legend is overdue for replacement, and an adequate replacement must attend to the process of science as carefully as Hull has done. I share his vision of a serious account of the social and intellectual dynamics of science that will avoid both the rosy blur of Legend and the facile charms of relativism.... Because of [Hull's] deep concern with the ways in which research is actually done, Science as a Process begins an important project in the study of science. It (...)
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  • Animal Species and Evolution.Ernst Mayr - 1963 - Belknap of Harvard University Press.
    Comprehensive evaluation and study of man's theories and knowledge of genetical characteristics and the evolutionary processes.
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  • Are Species Real?: An Essay on the Metaphysics of Species.Matthew H. Slater - 2013 - Palgrave-Macmillan.
    What are species? Are they objective features of the world? If so, what sort of features are they? Do everyday intuitions that species are real stand up to philosophical and scientific scrutiny? Two rival accounts of species' reality have dominated the discussion: that species are natural kinds defined by essential properties and that species are individuals. Unfortunately, neither account fully accommodates biological practice. In Are Species Real?, Slater presents a novel approach to this question aimed at accommodating the attractions to (...)
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  • The Species Problem: A Philosophical Analysis.Richard A. Richards - 2010 - Cambridge University Press.
    There is long-standing disagreement among systematists about how to divide biodiversity into species. Over twenty different species concepts are used to group organisms, according to criteria as diverse as morphological or molecular similarity, interbreeding and genealogical relationships. This, combined with the implications of evolutionary biology, raises the worry that either there is no single kind of species, or that species are not real. This book surveys the history of thinking about species from Aristotle to modern systematics in order to understand (...)
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