Anatomical information science
In A. G. Cohn & D. M. Mark (eds.), Spatial Information Theory. Springer. pp. 149-164 (2005)
Abstract
The Foundational Model of Anatomy (FMA) is a map of the human body. Like maps of other sorts – including the map-like representations we find in familiar anatomical atlases – it is a representation of a certain portion of spatial reality as it exists at a certain (idealized) instant of time. But unlike other maps, the FMA comes in the form of a sophisticated ontology of its objectdomain, comprising some 1.5 million statements of anatomical relations among some 70,000 anatomical kinds. It is further distinguished from other maps in that it represents not some specific portion of spatial reality (say: Leeds in 1996), but rather the generalized or idealized spatial reality associated with a generalized or idealized human being at some generalized or idealized instant of time. It will be our concern in what follows to outline the approach to ontology that is represented by the FMA and to argue that it can serve as the basis for a new type of anatomical information science. We also draw some implications for our understanding of spatial reasoning and spatial ontologies in general.Author's Profile
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Ontologies and terminologies: Continuum or dichotomy?Natalia Grabar, Thierry Hamon & Olivier Bodenreider - 2012 - Applied ontology 7 (4):375-386.
References found in this work
Relations in Biomedical Ontologies.Barry Smith, Werner Ceusters, Bert Klagges, Jacob Köhler, Anand Kuma, Jane Lomax, Chris Mungall, , Fabian Neuhaus, Alan Rector & Cornelius Rosse - 2005 - Genome Biology 6 (5):R46.
Mereotopology: A theory of parts and boundaries.Barry Smith - 1996 - Data and Knowledge Engineering 20 (3):287–303.
A Theory of Granular Partitions.Thomas Bittner & Barry Smith - 2003 - In M. Duckham, M. F. Goodchild & M. F. Worboys (eds.), Foundations of Geographic Information Science. London: Taylor & Francis. pp. 117-151.
On substances, accidents and universals: In defence of a constituent ontology.Barry Smith - 1997 - Philosophical Papers 26 (1):105-127.
The Role of Foundational Relations in the Alignment of Biomedical Ontologies.Barry Smith & Cornelius Rosse - 2004 - In M. Fieschi, E. Coiera & Y.-C. J. Li (eds.), Medinfo. IOS Press. pp. 444-448.