Classifying is a fundamental operation in the acquisition of knowledge. Taxonomic theory can help students of cognition, evolutionary psychology, ethology, anatomy, and sociobiology to avoid serious mistakes, both practical and theoretical. More positively, it helps in generating hypotheses useful to a wide range of disciplines. Composite wholes, such as species and societies, are “individuals” in the logical sense, and should not be treated as if they were classes. A group of analogous features is a natural kind, but a group of (...) homologous features is not. Imposing hypotheses justified only on the basis of nominalist, realist, phenomenalist, or conceptualist metaphysics upon the neurophysiology of organisms or upon the causes of behavior exemplifies the “psychologist's fallacy” of William James. Levels should be distinguished from their members and from classes of levels, and the ontological status of entities ranked at levels should be made clear. It is important not to confuse such categories as substance and process with one another. Several genetical terms, such as “gene” and chromosome,” are even more equivocal than has been realized. Discussions about units of selection, behavior, and thinking suffer from the ambiguity of a “unit of” an entity. An important source of misunderstanding about natural selection is the habit of treating it as an “agent”: in an important sense, natural selection does not “act” at all. (shrink)

Schaffner’s model of theory reduction has played an important role in philosophy of science and philosophy of biology. Here, the model is found to be problematic because of an internal tension. Indeed, standard antireductionist external criticisms concerning reduction functions and laws in biology do not provide a full picture of the limits of Schaffner’s model. However, despite the internal tension, his model usefully highlights the importance of regulative ideals associated with the search for derivational, and embedding, deductive relations among mathematical (...) structures in theoretical biology. A reconstructed Schaffnerian model could therefore shed light on mathematical theory development in the biological sciences and on the epistemology of mathematical practices more generally. *Received November 2006; revised March 2009. †To contact the author, please write to: Philosophy Department, University of California, Santa Cruz, 1156 High St., Santa Cruz, CA 95064; e‐mail: [email protected]. (shrink)

Most philosophical accounts of emergence are incompatible with reduction. Most scientists regard a system property as emergent relative to properties of its parts if it depends upon their mode of organization-a view consistent with reduction. Emergence is a failure of aggregativity, in which ``the whole is nothing more than the sum of its parts''. Aggregativity requires four conditions, giving powerful tools for analyzing modes of organization. Differently met for different decompositions of the system, and in different degrees, the structural conditions (...) can provide evaluation criteria for choosing decompositions, ``natural kinds'', and detecting functional localization fallacies, approximations, and various biases of vulgar reductionisms. This analysis of emergence and use of these conditions as heuristics is consistent with a broader reductionistic methodology. (shrink)

Richard Levins’ distinction between aggregate, composed and evolved systems acquires new significance as we recognize the importance of mechanistic explanation. Criteria for aggregativity provide limiting cases for absence of organization, so through their failure, can provide rich detectors for organizational properties. I explore the use of failures of aggregativity for the analysis of mechanistic systems in diverse contexts. Aggregativity appears theoretically desireable, but we are easily fooled. It may be exaggerated through approximation, conditions of derivation, and extrapolating from some conditions (...) of decomposition illegtimately to others. Evolved systems particularly may require analyses under alternative complementary decompositions. Exploring these conditions helps us to better understand the strengths and limits of reductionistic methods. (shrink)

The supervenience and multiple realizability of biological properties have been invoked to support a disunified picture of the biological sciences. I argue that supervenience does not capture the relation between fitness and an organism's physical properties. The actual relation is one of causal dependence and is, therefore, amenable to causal explanation. A case from optimality theory is presented and interpreted as a microreductive explanation of fitness difference. Such microreductions can have considerable scope. Implications are discussed for reductive physicalism in evolutionary (...) biology and for the unity of science. (shrink)

The impact of philosophy of science on biology is slight. Evolutionary biology, however, is nowadays an exception. The status of the neo-Darwinian theory of evolution is seriously challenged from a methodological perspective. However, the methodology used in the relevant discussions is plainly defective. A correct application of methodology to evolutionary theory leads to the following conclusions. The theory of natural selection is unfalsifiable in a strict sense of the term. This, however, does not militate against the theory, because no scientific (...) theory whatever is testable in this way. Under a more liberal testability criterion, the theory is surely testable. None the less, certain research programs may tend to make the theory untestable in practice. It has often been argued that the tautologous character of the principle of natural selection, allegedly the focus of evolutionary theory, makes the theory untestable through circular reasoning. Actually, the principle is only a tautology if ‘fitness’ is wrongly defined in terms of actual survival. But even then circular reasoning need not ensue. Evolutionary principles do not permit, without additional information, the derivation of statements about evolutionary events concerning particular species or populations. If this were a reason to criticize the theory , any other scientific theory would be inadequate by the same token. (shrink)

Rosenberg has rightly argued that fitness is supervenient. But he has wrongly assumed that this makes “The fittest survive” nontautologous. Supervenience makes strict reduction impossible. It sheds light on disputes concerning the testability of evolutionary theory.

Recently there has been a rise in the application of concepts and methods from biological evolutionary theory to human cultures and societies where the aim is to explain these by describing them as population-level phenomena reducible to individual-level processes. I argue against this type of view by using Mesoudi's Cultural Evolution as a case study. I claim that Mesoudi’s ontological assumptions about cultures and societies are dubious and his methodological assumptions inadequate when it comes to addressing cultural and social phenomena. (...) A consequence is that this approach to studying culture is, at the very least, incomplete and of limited application. (shrink)

Since the last decades of the twentieth and the beginning of the twenty-first century, the use of metaphysics by philosophers when approaching conceptual problems in biology has increased. Some philosophers call this tendency in philosophy of biology ‘Metaphysics of Biology’. In this paper, I aim at characterizing Metaphysics of Biology by paying attention to the diverse ways philosophers use metaphysics when addressing conceptual problems in biology. I will claim that there are two different modes of doing Metaphysics of Biology, namely (...) Metaphysics for Biology and Metaphysics in Biology. (shrink)

The notion of fitness is usually equated to reproductive success. However, this actualist approach presents some difficulties, mainly the explanatory circularity problem, which have lead philosophers of biology to offer alternative definitions in which fitness and reproductive success are distinguished. In this paper, we argue that none of these alternatives is satisfactory and, inspired by Mumford and Anjum’s dispositional theory of causation, we offer a definition of fitness as a causal dispositional property. We argue that, under this framework, the distinctiveness (...) that biologists usually attribute to fitness—namely, the fact that fitness is something different from both the physical traits of an organism and the number of offspring it leaves—can be explained, and the main problems associated with the concept of fitness can be solved. Firstly, we introduce Mumford and Anjum's dispositional theory of causation and present our definition of fitness as a causal disposition. We explain in detail each of the elements involved in our definition, namely: the relationship between fitness and the functional dispositions that compose it, the emergent character of fitness, and the context-sensitivity of fitness. Finally, we explain how fitness and realized fitness, as well as expected and realized fitness are distinguished in our approach to fitness as a causal disposition. (shrink)

I hope to show that supervenience and determination, as I have here intuitively characterized them, are really different expressions of the same core idea which one may make more precise in a great number of different ways, depending on the interpretation one puts on the catchall parameters “cases”, “truth of kind P”and “truth of kind S”.

Showing that the arithmetic mean number of offspring for a trait type often fails to be a predictive measure of fitness was a welcome correction to the philosophical literature on fitness. While the higher mathematical moments of a probability-weighted offspring distribution can influence fitness measurement in distinct ways, the geometric mean number of offspring is commonly singled out as the most appropriate measure. For it is well-suited to a compounding process and is sensitive to variance in offspring number. The geometric (...) mean thus proves to be a predictively efficacious measure of fitness in examples featuring discrete generations and within- or between-generation variance in offspring output. Unfortunately, this advance has subsequently led some to conclude that the arithmetic mean is never a good measure of fitness and that the geometric mean should accordingly be the default measure of fitness. We show not only that the arithmetic mean is a perfectly reasonable measure of fitness so long as one is clear about what it refers to, but also that it functions as a more general measure when properly interpreted. It must suffice as a measure of fitness in any case where the geometric mean has been effectively deployed as a measure. We conclude with a discussion about why the mathematical equivalence we highlight cannot be dismissed as merely of mathematical interest. (shrink)

Reductionism is often understood to include two theses: (1) every singular occurrence that the special sciences can explain also can be explained by physics; (2) every law in a higher-level science can be explained by physics. These claims are widely supposed to have been refuted by the multiple realizability argument, formulated by Putnam (1967, 1975) and Fodor (1968, 1975). The present paper criticizes the argument and identifies a reductionistic thesis that follows from one of the argument's premises.

Karl Popper argued in 1974 that evolutionary theory contains no testable laws and is therefore a metaphysical research program. Four years later, he said that he had changed his mind. Here we seek to understand Popper’s initial position and his subsequent retraction. We argue, contrary to Popper’s own assessment, that he did not change his mind at all about the substance of his original claim. We also explore how Popper’s views have ramifications for contemporary discussion of the nature of laws (...) and the structure of evolutionary theory. (shrink)

I want to explore what happens to two philosophical issues when we assume that the mind, a functional device, is to be understood by the same sort of functional analysis that guides biological investigation of other organismic systems and characteristics. The first problem area concerns the concept of rationality, its connection with reliability and reproductive success, and the status of rationality hypotheses in attribution of beliefs. It has been argued that ascribing beliefs to someone requires the assumption that that person (...) is rational. It also has been argued that evolutionary theory can account for the capacity we have for rational thought by appealing to the idea that rational methods for constructing beliefs are reliable and therefore represented a selected advantage. Both of these claims about rationality are critically examined. In the second part of the paper, I turn to some criticisms that have been advanced against "functionalist" solutions to the mind/body problem. These criticisms are defused when that doctrine is understood in terms of a Teleological (rather than a Turing Machine) notion of function. However, functionalism does not emerge totally unscathed. Voltaire's Dr. Pangloss saw everything in terms of its function and its perfect performance of its function. In the philosophy of mind, his influence lives on in the form of two ideas: (i) that we must possess rational methods for constructing beliefs, since our minds are the product of natural selection, and (ii) that psychological states and properties are individuated by their psychological functions. Contemporary biology provides the resources for avoiding Pangloss's wideeyed teleology in the study of adaptation. It is to be hoped that progress in psychology will loosen the grip of Panglossian assumptions in the study of mind. (shrink)

At one level, this paper is a lament and a warning. I lament biologists borrowing well-known terms and then drastically and awkwardly changing their meanings, and I warn about the mischief this does. Biology''s public image is at stake, as is its general usefulness. At another level, I attempt to clarify the misnamed concepts, beyond what has been achieved in recent philosophical writings. This helps to account for the mischief, and to see how it might be avoidable. But the most (...) important thing about the paper is that, at a third level, it is an argument against physicalism and materialism, especially those variants which deny the autonomy of organisms and the existence of intrinsic goods. Interpreting biology from the point of view of those denials leads to unsatisfactory and even bizarre results. (shrink)

A classification of models of reduction into three categories — theory reductionism, explanatory reductionism, and constitutive reductionism — is presented. It is shown that this classification helps clarify the relations between various explications of reduction that have been offered in the past, especially if a distinction is maintained between the various epistemological and ontological issues that arise. A relatively new model of explanatory reduction, one that emphasizes that reduction is the explanation of a whole in terms of its parts is (...) also presented in detail. Finally, the classification is used to clarify the debate over reductionism in molecular biology. It is argued there that while no model from the category of theory reduction might be applicable in that case, models of explanatory reduction might yet capture the structure of the relevant explanations. (shrink)

In several places we have argued that ‘fitness’ is a primitive term with respect to the theory of evolution properly understood. These arguments have relied heavily on the axiomatization of the theory provided by one of us. In contrast, both John Beatty and Robert Brandon have separately argued for a “propensity“ interpretation of “fitness” ; and in Brandon and Beatty they attack our view that “fitness“ is a primitive term in evolutionary theory, concluding that a definition by way of propensities (...) is possible and preferable. Here we reply to their criticisms, and argue that, at most, the view that fitness is a statistical propensity is a terminological variant on our thesis that it is a primitive in evolutionary theory. (shrink)

Es una opinión extendida que la teoría de la selección natural, tal como fue formulada originalmente por Darwin de manera “cualitativa”, ha sido reemplazada por una versión cuantitativa superior, brindada por la genética de poblaciones. En este artículo se discute contra esa tesis, sosteniendo en cambio que ambas teorías son complementarias, no sucesivas. Para ello, se introduce una línea de argumentación novedosa, que toma su inspiración en la crítica al “inductivismo estrecho” de Hempel. Se sostiene que los genetistas de poblaciones (...) serían incapaces de aplicar exitosamente su teoría sin hipótesis “ecológicas” preconcebidas, provenientes de la teoría darwiniana, que permitan particionar a la población en rasgos selectivamente relevantes. Se enfatiza además que la falla en notar este punto se debe a una mala comprensión de la estructura de la teoría darwiniana y de su ley o principio fundamental. A la luz de una mejor reconstrucción de dicho principio, se reexamina en mayor detalle la relación existente entre ambas teorías. (shrink)

In a recent issue of Biology and Philosophy, Kenneth Waters argues that the principle of survival of the fittest should be eliminated from the theory of natural selection, because it is an untestable law of probability, and as such, has no place in evolutionary theory. His argument is impressive, but it does not do justice to the practice of biology. The principle of survival of the fittest should not be eliminated from the theory of natural selection because it is important (...) to biological practice: it plays an essential role in explanation and discovery, and in unffying the theory of natural selection. (shrink)

Reductionists in biology claim that all biological events can be explained in terms of genes and macromolecules alone, while antireductionists argue that some biological events must be explained at a higher level. The literature, however, does not distinguish between different kinds of molecular explanation. The goal of this article is to identify and analyze three such kinds. The analysis of molecular explanations herein carries an important philosophical implication; in shunning crude reductionism and extreme versions of holism, we can combine the (...) insights of thoughtful reductionists with sophisticated antireductionism. When this is done, the question of explanatory reductionism becomes less substantial than often supposed. (shrink)

Many have felt that it is impossible to defend autonomous laws of social science: where the regularities upheld are law-like it is argued that they are not at base social scientific, and where the phenomena to be explained would seem to require social descriptions, it is argued that laws governing the phenomena are unavailable at that level. But is it possible to develop an ontology that supports the dependence of the social on the physical, while nonetheless supporting the explanatory power (...) of genuinely autonomous social scientific laws? The aim of this paper is to show that reductive explanation is not a requirement of a `naturalist' ontology, thereby defending an account of supervenience as a suitable framework within which to recognize a metaphysical relationship between the natural and the social that is consistent with the pursuit of autonomous nomological social scientific explanations. (shrink)

Are there laws in evolutionary biology? Stephen J. Gould has argued that there are factors unique to biological theorizing which prevent the formulation of laws in biology, in contradistinction to the case in physics and chemistry. Gould offers the problem of complexity as just such a fundamental barrier to biological laws in general, and to Dollos Law in particular. But I argue that Gould fails to demonstrate: (1) that Dollos Law is not law-like, (2) that the alleged failure of Dollos (...) Law demonstrates why there cannot be laws in biological science, and (3) that complexity is a fundamental barrier to nomologicality. (shrink)

Our understanding of the universe has grown rapidly in recent decades. We’ve discovered evidence of water in nearby planets, discovered planets outside our solar system, mapped the genomes of thousands of organisms, and probed the very origins and limits of life. The scientific perspective of life-as-it-could-be has expanded in part by research in astrobiology, synthetic biology, and artificial life. In the face of such scientific developments, we argue there is an ever-growing need for universal biology, life-as-it-must-be, the multidisciplinary study of (...) non-contingent aspects of life as guided by biological theory and constrained by the universe. We present three distinct but connected ways of universalizing biology—with respect to characterizing aspects of life everywhere, with respect to the explanatory scope of biological theory, and with respect to extending biological insights to the structure of nonbiological entities. For each of these, we sketch the theoretical goals and challenges, as well as give examples of current research that might be labeled universal biology. (shrink)

Science depends on judgments of the bearing of evidence on theory. Scientists must judge whether an observation or the result of an experiment supports, disconfirms, or is simply irrelevant to a given hypothesis. Similarly, scientists may judge that, given all the available evidence, a hypothesis ought to be accepted as correct or nearly so, rejected as false, or neither. Occasionally, these evidential judgments can be made on deductive grounds. If an experimental result strictly contradicts a hypothesis, then the truth of (...) the data deductively entails the falsity of the hypothesis. In the great majority of cases, however, the connection between evidence and hypothesis is non-demonstrative, or inductive. In particular, this is so whenever a general hypothesis is inferred to be correct on the basis of the available data, since the truth of the data will not deductively entail the truth of the hypothesis. It always remains possible that the hypothesis is false even though the data are correct. (shrink)

This article argues that it is possible to bring the social sciences into evolutionary focus without being committed to a thesis the author calls ontological reductionism, which is a widespread predilection for lower-level explanations. After showing why we should reject ontological reductionism, the author argues that there is a way to construe cultural evolution that does justice to the autonomy of social science explanations. This paves the way for a liberal approach to explanation the author calls explanatory pluralism, which allows (...) for the possibility of explaining cultural phenomena in terms of different evolutionary processes. (shrink)

Cognitive science's basic premises are under attack. In particular, its focus on internal cognitive processes is a target. Intelligence is increasingly interpreted, not as a matter of reclusive thought, but as successful agent-environment interaction. The critics claim that a major reorientation of the field is necessary. However, this will only occur when there is a distinct alternative conceptual framework to replace the old one. Whether or not a serious alternative is provided is not clear. Among the critics there is some (...) consensus, however, that this role could be fulfilled by the concept of a 'behavioral system'. This integrates agent and environment into one encompassing general system. We will discuss two contexts in which the behavioral systems idea is being developed. Autonomous Agents Research is the enterprise of building behavior-based robots. Dynamical Systems Theory provides a mathematical framework well suited for describing the interactions between complex systems. We will conclude that both enterprises provide important contributions to the behavioral systems idea. But neither turns it into a full conceptual alternative which will initiate a major paradigm switch in cognitive science. The concept will need a lot of fleshing out before it can assume that role. (shrink)

The inapplicability of variations on theory reduction in the context of genetics and their irrelevance to ongoing research has led to an anti-reductionist consensus in philosophy of biology. One response to this situation is to focus on forms of reductive explanation that better correspond to actual scientific reasoning (e.g. part–whole relations). Working from this perspective, we explore three different aspects (intrinsicality, fundamentality, and temporality) that arise from distinct facets of reductive explanation: composition and causation. Concentrating on these aspects generates new (...) forms of reductive explanation and conditions for their success or failure in biology and other sciences. This analysis is illustrated using the case of protein folding in molecular biology, which demonstrates its applicability and relevance, as well as illuminating the complexity of reductive reasoning in a specific biological context. (shrink)

Aunque parece una teoría relativamente simple, la teoría de la selección natural ha traído muchas discusiones al respecto de su reconstrucción. En particular, los autores han tenido dificultades a la hora de elucidar el concepto de aptitud (fitness) adecuadamente. El punto de vista de este trabajo consiste en que para entender adecuadamente esta cuestión, y además, para dar cuenta de manera adecuada de las explicaciones seleccionistas, tanto las dadas por Darwin como sus aplicaciones más actuales, es necesario a la hora (...) de reconstruir la teoría utilizar más conceptos de los que habitualmente se utilizan. En este trabajo se explayará sobre este punto y se presentará una reconstrucción de la teoría en cuestión con las herramientas del estructuralismo metateórico. -/- Title: Structuralist Reconstruction of Natural Selection Theory Abstract: Despite seeming relatively simple Natural Selection Theory has brought up many discussions regarding its reconstruction. In particular, many authors have had difficulties in explicating the concept of fitness. The point of view of this paper is that more concepts are needed in order to, on the one hand, understand more adequately this issue, and on the other hand, to account for selectionist explanations, both Darwin’s and current applications, in an adequate way. Having this in mind, I will offer a reconstruction of Natural Selection Theory using the tools of metatheoretical structuralism. (shrink)

The concept of fitness has generated a lot of discussion in philosophy of biology. There is, however, relative agreement about the need to distinguish at least two uses of the term: ecological fitness on the one hand, and population genetics fitness on the other. The goal of this paper is to give an explication of the concept of ecological fitness by providing a reconstruction of the theory of natural selection in which this concept was framed, that is, based on the (...) way the theory was put to use in Darwin’s main texts. I will contend that this reconstruction enables us to account for the current use of the theory of natural selection. The framework presupposed in the analysis will be that of metatheoretical structuralism. This framework will provide both a better understanding of the nature of ecological fitness and a more complete reconstruction of the theory. In particular, it will provide what I think is a better way of understanding how the concept of fitness is applied through heterogeneous cases. One of the major advantages of my way of thinking about natural selection theory is that it would not have the peculiar metatheoretical status that it has in other available views. I will argue that in order to achieve these goals it is necessary to make several concepts explicit, concepts that are frequently omitted in usual reconstructions. (shrink)