This paper examines the perspective of Shintoistic Christianity of Ebina Danjo, a Japanese theologian, during the Meiji period, and how his view influences Japanese churches today. Based on the review of literature, this paper investigates the historical background of Christianity in Japan during that period, followed by key issues of Ebina's thoughts on Christianity with respect to his Bible interpretation, nationalism, and view of the Logos. Through the analysis of his perspective of Shintoistic Christianity, this paper presents some missiological implications.