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  1. Discovering DNA Methylation, the History and Future of the Writing on DNA.Joshua D. Tompkins - 2022 - Journal of the History of Biology 55 (4):865-887.
    DNA methylation is a quintessential epigenetic mechanism. Widely considered a stable regulator of gene silencing, it represents a form of “molecular braille,” chemically printed on DNA to regulate its structure and the expression of genetic information. However, there was a time when methyl groups simply existed in cells, mysteriously speckled across the cytosine building blocks of DNA. Why was the code of life chemically modified, apparently by “no accident of enzyme action” (Wyatt 1951 )? If all cells in a body (...)
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  • Incarnate Reason and the Embryo: A Response to Dabrock.C. Tollefsen - 2010 - Christian Bioethics 16 (2):177-186.
    “Incarnate reason” names, in Peter Dabrock's essay, both the task of utilizing natural reason in ethical and political discourse, and an answer to the ontological question about human persons, “What are we?” In this essay, I investigate the significance of this construal for questions about the metaphysical, moral, and political status of the human embryo.
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  • Regeneration: Thomas Hunt Morgan’s Window into Development. [REVIEW]Mary Evelyn Sunderland - 2010 - Journal of the History of Biology 43 (2):325 - 361.
    Early in his career Thomas Hunt Morgan was interested in embryology and dedicated his research to studying organisms that could regenerate. Widely regarded as a regeneration expert, Morgan was invited to deliver a series of lectures on the topic that he developed into a book, Regeneration (1901). In addition to presenting experimental work that he had conducted and supervised, Morgan also synthesized and critiqued a great deal of work by his peers and predecessors. This essay probes into the history of (...)
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  • Regeneration: Thomas Hunt Morgan’s Window into Development.Mary Evelyn Sunderland - 2010 - Journal of the History of Biology 43 (2):325-361.
    Early in his career Thomas Hunt Morgan was interested in embryology and dedicated his research to studying organisms that could regenerate. Widely regarded as a regeneration expert, Morgan was invited to deliver a series of lectures on the topic that he developed into a book, Regeneration. In addition to presenting experimental work that he had conducted and supervised, Morgan also synthesized and critiqued a great deal of work by his peers and predecessors. This essay probes into the history of regeneration (...)
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  • (Re)defining stem cells.Stanley Shostak - 2006 - Bioessays 28 (3):301-308.
    Stem-cell nomenclature is in a muddle! So-called stem cells may be self-renewing or emergent, oligopotent (uni- and multipotent) or pluri- and totipotent, cells with perpetual embryonic features or cells that have changed irreversibly. Ambiguity probably seeped into stem cells from common usage, flukes in biology's history beginning with Weismann's divide between germ and soma and Haeckel's biogenic law and ending with contemporary issues over the therapeutic efficacy of adult versus embryonic cells. Confusion centers on tissue dynamics, whether stem cells are (...)
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  • Systems bioethics and stem cell biology.Jason Scott Robert, Jane Maienschein & Manfred D. Laubichler - 2006 - Journal of Bioethical Inquiry 3 (1-2):19-31.
    The complexities of modern science are not adequately reflected in many bioethical discussions. This is especially problematic in highly contested cases where there is significant pressure to generate clinical applications fast, as in stem cell research. In those cases a more integrated approach to bioethics, which we call systems bioethics, can provide a useful framework to address ethical and policy issues. Much as systems biology brings together different experimental and methodological approaches in an integrative way, systems bioethics integrates aspects of (...)
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  • Response to Open Peer Commentaries on “The Ethos and Ethics of Translational Research”.Jason Scott Robert, Mary Sunderland, Rachel A. Ankeny & Jane Maienschein - 2008 - American Journal of Bioethics 8 (3):1-3.
    Calls for the “translation” of research from bench to bedside are increasingly demanding. What is translation, and why does it matter? We sketch the recent history of outcome-oriented translational research in the United States, with a particular focus on the Roadmap Initiative of the National Institutes of Health. Our main example of contemporary translational research is stem cell research, which has superseded genomics as the translational object of choice. We explore the nature of and obstacles to translational research and assess (...)
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  • Enhancing bioethics, enhancing bioscience: Bioethics and the New Embryology: Springboards for Debate by Scott F. Gilbert, Anna L. Tyler, and Emily J. Zackin. (2005). Sunderland MA: Sinauer Associates. ISBN: 0716773457. [REVIEW]Jason Scott Robert - 2006 - Bioessays 28 (10):1062-1063.
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  • In vitro veritas: New reproductive and genetic technologies and women's rights in contemporary France.Sandra Reineke - 2008 - International Journal of Feminist Approaches to Bioethics 1 (1):91-125.
    This study examines recent French bioethics laws governing the uses of new reproductive and genetic technologies (NRGTs)—including in-vitro fertilization, surrogate motherhood, prenatal diagnostics, sex selection, and cloning—in light of feminist claims to women's rights, especially a woman's right to reproductive freedom. To this end, the study explores two interrelated questions: First, to what extent have French feminists supported NRGT development and treatment? Second, to what extent do French national bioethics debates, laws, and policies reflect feminist reactions to NRGTs? The investigation (...)
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  • In vitro veritas: New reproductive and genetic technologies and women’s rights in contemporary France.Sandra Reineke - 2008 - International Journal of Feminist Approaches to Bioethics 1 (1):91-125.
    This study examines recent French bioethics laws governing the uses of new reproductive and genetic technologies —including in-vitro fertilization, surrogate motherhood, prenatal diagnostics, sex selection, and cloning—in light of feminist claims to women’s rights, especially a woman’s right to reproductive freedom. To this end, the study explores two interrelated questions: First, to what extent have French feminists supported NRGT development and treatment? Second, to what extent do French national bioethics debates, laws, and policies reflect feminist reactions to NRGTs? The investigation (...)
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  • Three conceptions of explaining how possibly—and one reductive account.Johannes Persson - 2009 - In Henk W. de Regt (ed.), Epsa Philosophy of Science: Amsterdam 2009. Springer. pp. 275--286.
    Philosophers of science have often favoured reductive approaches to how-possibly explanation. This article identifies three alternative conceptions making how-possibly explanation an interesting phenomenon in its own right. The first variety approaches “how possibly X?” by showing that X is not epistemically impossible. This can sometimes be achieved by removing misunderstandings concerning the implications of one’s current belief system but involves characteristically a modification of this belief system so that acceptance of X does not result in contradiction. The second variety offers (...)
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  • The Specter of the Past: What the History of Theoretical Biology Means Today.Manfred D. Laubichler - 2007 - Biological Theory 2 (2):131-133.
  • Why Do Stem Cells Create Such Public Controversy?Jane Maienschein - 2011 - Spontaneous Generations 5 (1):27-35.
    Biological development is about history, the history of an individual through time. Historically, the dominant epigenetic tradition has seen the developmental process as an unfolding of potential or in terms of the emergence of new organization that becomes an individual organism over time. The concept of development has included differentiation, growth, and morphogenesis; since the mid-nineteenth century, it has been seen in terms of cell division. Along the way have come explorations of such issues as the extent to which development (...)
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  • Understanding Embryos in a Changing and Complex World: A Case of Philosophers and Historians Engaging Society. [REVIEW]Jane Maienschein - 2014 - Erkenntnis 79 (S5):1-19.
    The case of embryo research provides insight into the challenges for historians and philosophers of science who want to engage social issues, and even more challenges in engaging society. Yet there are opportunities in doing so. History and philosophy of science research demonstrates that the public impression of embryos does not fit with our scientific understanding. In cases where there are competing understandings of the phenomena and public impacts, we have to negotiate social responses. Historians and philosophers of science can (...)
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  • The ethos and ethics of translational research.Jane Maienschein, Mary Sunderland, Rachel A. Ankeny & Jason Scott Robert - 2008 - American Journal of Bioethics 8 (3):43 – 51.
    Calls for the “translation” of research from bench to bedside are increasingly demanding. What is translation, and why does it matter? We sketch the recent history of outcome-oriented translational research in the United States, with a particular focus on the Roadmap Initiative of the National Institutes of Health (Bethesda, MD). Our main example of contemporary translational research is stem cell research, which has superseded genomics as the translational object of choice. We explore the nature of and obstacles to translational research (...)
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  • Regenerative Medicine in Historical Context.Jane Maienschein - 2009 - Medicine Studies 1 (1):33-40.
    The phrase “regenerative medicine” is used so often and for so many different things, with such enthusiasm or worry, and often with a sense that this is something radically new. This paper places studies of regeneration and applications in regenerative medicine into historical perspective. In fact, the first stem cell experiment was carried out in 1907, and many important lines of research have contributed since. This paper explores both what we can learn about the history and what we can learn (...)
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  • Competing Views of Embryos for the Twenty-First Century: Textbooks and Society.Jane Maienschein & Karen Wellner - 2013 - Science & Education 22 (2):241-253.
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  • Controlling Life: From Jacques Loeb to Regenerative Medicine. [REVIEW]Jane Maienschein - 2009 - Journal of the History of Biology 42 (2):215 - 230.
    In his 1987 book "Controlling Life: Jacques Loeb and the Engineering Ideal in Biology", Philip Pauly presented his readers with the biologist Jacques Loeb and his role in developing an emphasis on control of life processes. Loeb's work on artificial parthenogenesis, for example, provided an example of bioengineering at work. This paper revisits Pauly's study of Loeb and explores the way current research in regenerative medicine reflects the same tradition. A history of regeneration research reveals patterns of thinking and research (...)
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  • Building Biophysics in Mid-Century China: The University of Science and Technology of China.Yi Lai Christine Luk - 2015 - Journal of the History of Biology 48 (2):201-235.
    Biophysics has been either an independent discipline or an element of another discipline in the United States, but it has always been recognized as a stand-alone discipline in the People’s Republic of China since 1949. To inquire into this apparent divergence, this paper investigates the formational history of biophysics in China by examining the early institutional history of one of the best-known and prestigious science and technology universities in the PRC, the University of Science and Technology of China. By showing (...)
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  • Taking development seriously: Who, what, when, where, why, how? [REVIEW]Alan C. Love - 2006 - Biology and Philosophy 21 (4):575-589.
  • What’s Manifest in the History of SciTech: Reflections on The History Manifesto.Daniel J. Kevles - 2016 - Isis 107 (2):315-323.
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  • The Cyborg Embryo.Sarah Franklin - 2006 - Theory, Culture and Society 23 (7-8):167-187.
    It is useful on the occasion of the 21st anniversary of the ‘Cyborg Manifesto’ not only to reconsider its lessons in the context of what is frequently described as the re-engineering of ‘life itself’, but to look at Haraway’s earlier work on embryos. In this article I begin with Haraway’s analysis of embryology in the 1970s to suggest her cyborg embryo was already there, and has, if anything, gained relevance in today’s embryo-strewn society. I argue further, as the title suggests, (...)
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  • Synthetic Biology and the Translational Imperative.Raheleh Heidari Feidt, Marcello Ienca, Bernice Simone Elger & Marc Folcher - 2019 - Science and Engineering Ethics 25 (1):33-52.
    Advances at the interface between the biological sciences and engineering are giving rise to emerging research fields such as synthetic biology. Harnessing the potential of synthetic biology requires timely and adequate translation into clinical practice. However, the translational research enterprise is currently facing fundamental obstacles that slow down the transition of scientific discoveries from the laboratory to the patient bedside. These obstacles including scarce financial resources and deficiency of organizational and logistic settings are widely discussed as primary impediments to translational (...)
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  • The Stem Cell Uncertainty Principle.Melinda Bonnie Fagan - 2013 - Philosophy of Science 80 (5):945-957.
    Stem cells are defined as having capacities for both self-renewal and differentiation. Many different entities satisfy this working definition. I show that this general stem cell concept is relative to a cell lineage, temporal duration, and characters of interest. Experiments specify values for these variables. So claims about stem cells must be understood in terms of experimental methods used to identify them. Furthermore, the stem cell concept imposes evidential constraints on interpretation of experimental results. From these constraints, it follows that (...)
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  • Philosophy of Stem Cell Biology – an Introduction.Melinda Bonnie Fagan - 2013 - Philosophy Compass 8 (12):1147-1158.
    This review surveys three central issues in philosophy of stem cell biology: the nature of stem cells, stem cell experiments, and explanations of stem cell capacities. First, I argue that the fundamental question ‘what is a stem cell?’ has no single substantive answer. Instead, the core idea is explicated via an abstract model, which accounts for many features of stem cell experiments. The second part of this essay examines several of these features: uncertainty, model organisms, and manipulability. The results shed (...)
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  • Stem cell lacunae: Sarah Franklin: Biological relatives: IVF, stem cells, and the future of kinship. Durham and London: Duke University Press, 2013, 376pp, $26.95, £17.99 PB Charis Thompson: Good science: The ethical choreography of stem cell research. Cambridge, MA: The MIT Press, 2013, 360pp, $36.00, £24.95 HB.Melinda Bonnie Fagan - 2014 - Metascience 24 (1):147-153.
    Sarah Franklin’s Biological relatives: IVF, stem cells, and the future of kinship and Charis Thompson’s Good science: the ethical choreography of stem cell research, examine recently normalized biotechnologies. Franklin’s monograph extends her previous work on in vitro fertilization , deconstructing the success of a technology that, she argues, has grown “curiouser and curiouser” while taking hold in scientific and social life. IVF in its diverse aspects becomes a lens for scrutinizing our ambivalence about new technology, which Franklin articulates by putting (...)
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  • Commentary on ‘How causal are microbiomes?’.Melinda Bonnie Fagan - 2019 - Biology and Philosophy 34 (6):58.
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  • Commentary on ‘How causal are microbiomes?’.Melinda Bonnie Fagan - 2019 - Biology and Philosophy 34 (6):58.
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  • Crucial Stem Cell Experiments? Stem Cells, Uncertainty, and Single-Cell Experiments.Melinda Bonnie Fagan - 2015 - Theoria: Revista de Teoría, Historia y Fundamentos de la Ciencia 30 (2):183-205.
    I have previously argued that stem cell experiments cannot demonstrate that a single cell is a stem cell (Fagan 2013a, b). Laplane and others dispute this claim, citing experiments that identify stem cells at the singlecell level. This paper rebuts the counterexample, arguing that the alleged ‘crucial stem cell experiments’ do not measure self-renewal for a single cell, do not establish a single cell’s differentiation potential, and, if interpreted as providing results about single cells, fall into epistemic circularity. I then (...)
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  • What justifies the United States ban on federal funding for nonreproductive cloning?Thomas V. Cunningham - 2013 - Medicine, Health Care and Philosophy 16 (4):825-841.
    This paper explores how current United States policies for funding nonreproductive cloning are justified and argues against that justification. I show that a common conceptual framework underlies the national prohibition on the use of public funds for cloning research, which I call the simple argument. This argument rests on two premises: that research harming human embryos is unethical and that embryos produced via fertilization are identical to those produced via cloning. In response to the simple argument, I challenge the latter (...)
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  • Cancer, Conflict, and the Development of Nuclear Transplantation Techniques.Nathan Crowe - 2014 - Journal of the History of Biology 47 (1):63-105.
    The technique of nuclear transplantation – popularly known as cloning – has been integrated into several different histories of twentieth century biology. Historians and science scholars have situated nuclear transplantation within narratives of scientific practice, biotechnology, bioethics, biomedicine, and changing views of life. However, nuclear transplantation has never been the focus of analysis. In this article, I examine the development of nuclear transplantation techniques, focusing on the people, motivations, and institutions associated with the first successful nuclear transfer in metazoans in (...)
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  • Die zwei (und mehr) Kulturen des „Klons“: Utopie und Fiktion im biowissenschaftlichen Diskurs der Nachkriegszeit.Christina Brandt - 2009 - NTM Zeitschrift für Geschichte der Wissenschaften, Technik und Medizin 17 (3):243-275.
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  • Development and Heredity in the Interwar Period: Hans Spemann and Fritz Baltzer on Organizers and Merogones.Christina Brandt - 2022 - Journal of the History of Biology 55 (2):253-283.
    This article explores the collaborative research of the Nobel laureate Hans Spemann (1869–1941) and the Swiss zoologist Fritz Baltzer (1884–1974) on problems at the intersection of development and heredity and raises more general questions concerning science and politics in Germany in the interwar period. It argues that Spemann and Baltzer’s collaborative work made a significant contribution to the then ongoing debates about the relation between developmental physiology and hereditary studies, although Spemann distanced himself from _Drosophila_ genetics because of his anti-reductionist (...)
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  • Traversing birth: continuity and contingency in research on development in nineteenth-century life and human sciences.Caroline Arni - 2015 - History and Philosophy of the Life Sciences 37 (1):50-67.
    In the history of life sciences, it has often been argued that the individual organism emerged, around 1800, as a four-dimensional entity—a temporalized entity. Against this backdrop, the article asks how research on development contributed to structuring the time of the organism in terms of a historical process, that is, by understanding a given phenomenon as brought forth by what preceded it and as establishing conditions for what will follow, thus relating the past, the present and the future in a (...)
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  • Hidden Entities and Experimental Practice: Renewing the Dialogue Between History and Philosophy of Science.Theodore Arabatzis - 2011 - Boston Studies in the Philosophy of Science 263:125-139.
    In this chapter I investigate the prospects of integrated history and philosophy of science, by examining how philosophical issues raised by “hidden entities”, entities that are not accessible to unmediated observation, can enrich the historical investigation of their careers. Conversely, I suggest that the history of those entities has important lessons to teach to the philosophy of science. Hidden entities have played a crucial role in the development of the natural sciences. Despite their centrality to past scientific practice, however, several (...)
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  • Special Issue: Philosophical Considerations in the Teaching of Biology. Part II, Evolution, Development and Genetics.Kostas Kampourakis (ed.) - 2013 - Springer (Science & Education).
  • What Justifies the Ban on Federal Funding for Nonreproductive Cloning?Thomas V. Cunningham - 2013 - Medicine, Health Care, and Philosophy 16:825-841.
    This paper explores how current United States policies for funding nonreproductive cloning are justified and argues against that justification. I show that a common conceptual framework underlies the national prohibition on the use of public funds for cloning research, which I call the simple argument. This argument rests on two premises: that research harming human embryos is unethical and that embryos produced via fertilization are identical to those produced via cloning. In response to the simple argument, I challenge the latter (...)
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  • Organismo y organización en la biología teórica¿ Vuelta al organicismo.Arantza Etxeberria & Jon Umerez - 2006 - Ludus Vitalis 14 (26):3-38.
    ABSTRACT. This paper contemplates Organicism and its relation with molecular and evolutionary biology. We explore whether twentieth-first century biology is returning to positions held at the beginning of the twentieth century and then abandoned. The guiding line is a history of theoretical biology in which we distinguish three periods: 1. The 20s-30s, and the Theoretical Biology Club (Needham, Woodger, and Waddington, among others); 2. An intermediate period in the 60s-70s, in which, in spite of the eclosion of the molecular and (...)
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  • Standards in History: Evaluating Success in Stem Cell Experiments.Melinda Fagan - 2012 - In Henk W. de Regt (ed.), Epsa Philosophy of Science: Amsterdam 2009. Springer. pp. 43--53.
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  • Psa 2012.-Preprint Volume- - unknown
    These preprints were automatically compiled into a PDF from the collection of papers deposited in PhilSci-Archive in conjunction with the PSA 2012.
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  • Experimental standards: Evaluating success in stem cell biology.Melinda Fagan - unknown
    This paper aims to bring the epistemic dimensions of stem cell experiments out of the background, and show that they can be critically evaluated. After introducing some basic concepts of stem cell biology, I set out the current “gold standard” for experimental success in that field (§2). I then trace the origin of this standard to a 1988 controversy over blood stem cells (§3). Understanding the outcome of this controversy requires attention to the details of experimental techniques, the organization of (...)
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