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  1. Structuralism in Phylogenetic Systematics.Richard H. Zander - 2010 - Biological Theory 5 (4):383-394.
    Systematics based solely on structuralist principles is non-science because it is derived from first principles that are inconsistent in dealing with both synchronic and diachronic aspects of evolution, and its evolutionary models involve hidden causes, and unnameable and unobservable entities. Structuralist phylogenetics emulates axiomatic mathematics through emphasis on deduction, and “hypotheses” and “mapped trait changes” that are actually lemmas and theorems. Sister-group-only evolutionary trees have no caulistic element of scientific realism. This results in a degenerate systematics based on patterns of (...)
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  • Proxy measurement in paleoclimatology.Joseph Wilson & F. Garrett Boudinot - 2022 - European Journal for Philosophy of Science 12 (1):1-20.
    In this paper we argue that the difference between standard measurement and proxy measurement in paleoclimatology should not be understood in terms of ‘directness’. Measurements taken by climatologists to be paradigmatically non-proxy exhibit the kinds of indirectness that are thought to separate them proxy measurement. Rather, proxy measurements and standard measurements differ in how they account for confounding causal factors. Measurements are ‘proxy’ to the extent that the measurements require vicarious controls, while measurements are not proxy, but rather ‘standard’, to (...)
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  • Variety-of-evidence reasoning about the distant past: A case study in paleoclimate reconstruction.Martin A. Vezér - 2017 - European Journal for Philosophy of Science 7 (2):257-265.
    The epistemology of studies addressing questions about historical and prehistorical phenomena is a subject of increasing discussion among philosophers of science. A related field of inquiry that has yet to be connected to this topic is the epistemology of climate science. Branching these areas of research, I show how variety-of-evidence reasoning accounts for scientific inferences about the past by detailing a case study in paleoclimate reconstruction. This analysis aims to clarify the logic of historical inquiry in general and, by focusing (...)
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  • Philosophical Issues in Recent Paleontology.Derek D. Turner - 2014 - Philosophy Compass 9 (7):494-505.
    The distinction between idiographic science, which aims to reconstruct sequences of particular events, and nomothetic science, which aims to discover laws and regularities, is crucial for understanding the paleobiological revolution of the 1970s and 1980s. Stephen Jay Gould at times seemed conflicted about whether to say (a) that idiographic science is fine as it is or (b) that paleontology would have more credibility if it were more nomothetic. Ironically, one of the lasting results of the paleobiological revolution was a new (...)
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  • Historical Science, Over- and Underdetermined: A Study of Darwin’s Inference of Origins.Aviezer Tucker - 2011 - British Journal for the Philosophy of Science 62 (4):805-829.
    The epistemology of the historical sciences has been debated recently. Cleland argued that the effects of the past overdetermine it. Turner argued that the past is underdetermined by its effects because of the decay of information from the past. I argue that the extent of over- and underdetermination cannot be approximated by philosophical inquiry. It is an empirical question that each historical science attempts to answer. Philosophers should examine how paradigmatic cases of historical science handled underdetermination or utilized overdetermination. I (...)
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  • Should Intelligent Design be Taught in Public School Science Classrooms?Anya Plutynski - 2010 - Science & Education 19 (6-8):779-795.
    A variety of different arguments have been offered for teaching ‘‘both sides’’ of the evolution/ID debate in public schools. This article reviews five of the most common types of arguments advanced by proponents of Intelligent Design and demonstrates how and why they are founded on confusion and misunderstanding. It argues on behalf of teaching evolution, and relegating discussion of ID to philosophy or history courses.
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  • When Science Studies Religion: Six Philosophy Lessons for Science Classes.Massimo Pigliucci - 2013 - Science & Education 22 (1):49-67.
    It is an unfortunate fact of academic life that there is a sharp divide between science and philosophy, with scientists often being openly dismissive of philosophy, and philosophers being equally contemptuous of the naivete ́ of scientists when it comes to the philosophical underpinnings of their own discipline. In this paper I explore the possibility of reducing the distance between the two sides by introducing science students to some interesting philosophical aspects of research in evolutionary biology, using biological theories of (...)
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  • On the Relationship between Science and Ethics.Massimo Pigliucci - 2003 - Zygon 38 (4):871-894.
    The relationship between ethics and science has been discussed within the framework of continuity versus discontinuity theories, each of which can take several forms. Continuity theorists claim that ethics is a science or at least that it has deep similarities with the modus operandi of science. Discontinuity theorists reject such equivalency, while at the same time many of them claim that ethics does deal with objective truths and universalizable statements, just not in the same sense as science does. I propose (...)
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  • The other eukaryotes in light of evolutionary protistology.Maureen A. O’Malley, Alastair G. B. Simpson & Andrew J. Roger - 2013 - Biology and Philosophy 28 (2):299-330.
    In order to introduce protists to philosophers, we outline the diversity, classification, and evolutionary importance of these eukaryotic microorganisms. We argue that an evolutionary understanding of protists is crucial for understanding eukaryotes in general. More specifically, evolutionary protistology shows how the emphasis on understanding evolutionary phenomena through a phylogeny-based comparative approach constrains and underpins any more abstract account of why certain organismal features evolved in the early history of eukaryotes. We focus on three crucial episodes of this history: the origins (...)
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  • Histories of molecules: Reconciling the past.Maureen A. O'Malley - 2016 - Studies in History and Philosophy of Science Part A 55:69-83.
  • Types of experiments and causal process tracing: What happened on the Kaibab Plateau in the 1920s.Roberta L. Millstein - 2019 - Studies in History and Philosophy of Science Part A 78:98-104.
    In a well-cited book chapter, ecologist Jared Diamond characterizes three main types of experiment performed in community ecology: laboratory experiment, field experiment, and natural experiment. Diamond argues that each form of experiment has strengths and weaknesses, with respect to, for example, realism or the ability to follow a causal trajectory. But does Diamond’s typology exhaust the available kinds of cause-finding practices? Some social scientists have characterized something they call “causal process tracing.” Is this a fourth type of experiment or something (...)
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  • Philosophy of sustainability experimentation _ experimental legacy, normativity and transfer of evidence.Stojanovic Milutin - 2021 - European Journal for Philosophy of Science 11 (3):1-22.
    The recent proliferation of types and accounts of experimentation in sustainability science still lacks philosophical reflection. The present paper introduces this burgeoning topic to the philosophy of science by identifying key notions and dynamics in sustainability experimentation, by discussing taxonomies of sustainability experimentation and by focusing on barriers to the transfer of evidence. It integrates three topics: the philosophy of experimentation; the sustainability science literature on experimentation; and discussions on values in science coming from the general philosophy of science, the (...)
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  • Understanding scientific study via process modeling.Robert W. P. Luk - 2010 - Foundations of Science 15 (1):49-78.
    This paper argues that scientific studies distinguish themselves from other studies by a combination of their processes, their (knowledge) elements and the roles of these elements. This is supported by constructing a process model. An illustrative example based on Newtonian mechanics shows how scientific knowledge is structured according to the process model. To distinguish scientific studies from research and scientific research, two additional process models are built for such processes. We apply these process models: (1) to argue that scientific progress (...)
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  • Why is Information Retrieval a Scientific Discipline?Robert W. P. Luk - 2022 - Foundations of Science 27 (2):427-453.
    It is relatively easy to state that information retrieval is a scientific discipline but it is rather difficult to understand why it is science because what is science is still under debate in the philosophy of science. To be able to convince others that IR is science, our ability to explain why is crucial. To explain why IR is a scientific discipline, we use a theory and a model of scientific study, which were proposed recently. The explanation involves mapping the (...)
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  • Sketching a Theology based on Historical Science.Robert W. P. Luk - 2022 - Science and Philosophy 10 (1):21-44.
    St. Thomas Aquinas envisaged theology to be a kind of scientia which was considered as a kind of first cause science. However, science of that time is different from “modern” science. Recently, a theory of scientific study is developed, which outlines science by a theory and some models similar to knowledge in physics. According to this theory, sciences organize their knowledge consisting of theories, models and experiments interacting with physical situations. Perhaps, it is possible to organize knowledge of Christian theology (...)
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  • A theory of scientific study.Robert W. P. Luk - 2017 - Foundations of Science 22 (1):11-38.
    This paper presents a theory of scientific study which is regarded as a social learning process of scientific knowledge creation, revision, application, monitoring and dissemination with the aim of securing good quality, general, objective, testable and complete scientific knowledge of the domain. The theory stipulates the aim of scientific study that forms the basis of its principles. It also makes seven assumptions about scientific study and defines the major participating entities. It extends a recent process model of scientific study into (...)
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  • Why experiments matter.Arnon Levy & Adrian Currie - 2019 - Inquiry: An Interdisciplinary Journal of Philosophy 62 (9-10):1066-1090.
    ABSTRACTExperimentation is traditionally considered a privileged means of confirmation. However, why and how experiments form a better confirmatory source relative to other strategies is unclear, and recent discussions have identified experiments with various modeling strategies on the one hand, and with ‘natural’ experiments on the other hand. We argue that experiments aiming to test theories are best understood as controlled investigations of specimens. ‘Control’ involves repeated, fine-grained causal manipulation of focal properties. This capacity generates rich knowledge of the object investigated. (...)
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  • Down to Earth: History and philosophy of geoscience in practice for undergraduate education.Maarten G. Kleinhans - 2021 - European Journal for Philosophy of Science 11 (3):1-15.
    Undergraduate geoscience students are rarely exposed to history and philosophy of science. I will describe the experiences with a short course unfavourably placed in the first year of a bachelor of earth science. Arguments how HPS could enrich their education in many ways are sketched. One useful didactic approach is to develop a broader interest by connecting HPS themes to practical cases throughout the curriculum, and develop learning activities that allow students to reflect on their skills, methods and their field (...)
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  • Testing times: regularities in the historical sciences.Ben Jeffares - 2008 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 39 (4):469-475.
  • Testing times: Regularities in the historical sciences.Ben Jeffares - 2008 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 39 (4):469-475.
    The historical sciences, such as geology, evolutionary biology, and archaeology, appear to have no means to test hypotheses. However, on closer examination, reasoning in the historical sciences relies upon regularities, regularities that can be tested. I outline the role of regularities in the historical sciences, and in the process, blur the distinction between the historical sciences and the experimental sciences: all sciences deploy theories about the world in their investigations.
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  • Guessing the future of the past: Derek Turner, Making Prehistory: Historical Science and the Realism Debate. Cambridge University Press, Cambridge, UK, 2007.Ben Jeffares - 2010 - Biology and Philosophy 25 (1):125-142.
    I review the book “Making Prehistory: Historical Science and the Scientific Realism Debate” by Derek Turner. Turner suggests that philosophers should take seriously the historical sciences such as geology when considering philosophy of science issues. To that end, he explores the scientific realism debate with the historical sciences in mind. His conclusion is a view allied to that of Arthur Fine: a view Turner calls the natural historical attitude. While I find Turner’s motivations good, I find his characterisation of the (...)
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  • Explaining the past in the geosciences.Robert John Inkpen - 2008 - Philosophia 36 (4):495-507.
    Abductive reasoning is central to reconstructing the past in the geosciences. This paper outlines the nature of the abductive method and restates it in Bayesian terms. Evidence plays a key role in this working method and, in particular, traces of the past are important in this explanatory framework. Traces, whether singularly or as groups, are interpreted within the context of the event for which they have evidential claims. Traces are not considered as independent entities but rather as inter-related pieces of (...)
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  • Non-Cognitive Values and Objectivity in Scientific Explanation: Egalitarianism and the Case of the Movius Line.Raoul Gervais - 2013 - Perspectives on Science 21 (4):429-452.
    In the debate about values in science, it is a time-honored tradition to distinguish between the normative question of whether non-cognitive values should play a role in science and the descriptive question of whether they in fact do so or not.1 Among philosophers of science, it is now an accepted view that the descriptive question has been settled. That is, it is no longer disputed that non-cognitive values play a role in science. Hence, all that is left to do on (...)
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  • Historical Reconstruction: Gaining Epistemic Access to the Deep Past.Patrick Forber - 2011 - Philosophy, Theory, and Practice in Biology 3 (20130604).
    We discuss the scientific task of historical reconstruction and the problem of epistemic access. We argue that strong epistemic support for historical claims consists in the consilience of multiple independent lines of evidence, and analyze the impact hypothesis for the End-Cretaceous mass extinction to illustrate the accrual of epistemic support. Although there are elements of the impact hypothesis that enjoy strong epistemic support, the general conditions for this are strict, and help to clarify the difficulties associated with reconstructing the deep (...)
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  • The 'requirement of total evidence' and its role in phylogenetic systematics.Kirk Fitzhugh - 2006 - Biology and Philosophy 21 (3):309-351.
    The question of whether or not to partition data for the purposes of inferring phylogenetic hypotheses remains controversial. Opinions have been especially divided since Kluge's (1989, Systematic Zoology 38, 7–25) claim that data partitioning violates the requirement of total evidence (RTE). Unfortunately, advocacy for or against the RTE has not been based on accurate portrayals of the requirement. The RTE is a basic maxim for non-deductive inference, stipulating that evidence must be considered if it has relevance to an inference. Evidence (...)
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  • Sequence Data, Phylogenetic Inference, and Implications of Downward Causation.Kirk Fitzhugh - 2016 - Acta Biotheoretica 64 (2):133-160.
    Framing systematics as a field consistent with scientific inquiry entails that inferences of phylogenetic hypotheses have the goal of producing accounts of past causal events that explain differentially shared characters among organisms. Linking observations of characters to inferences occurs by way of why-questions implied by data matrices. Because of their form, why-questions require the use of common-cause theories. Such theories in phylogenetic inferences include natural selection and genetic drift. Selection or drift can explain ‘morphological’ characters but selection cannot be causally (...)
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  • Phylogenetic Inference and the Misplaced Premise of Substitution Rates.Kirk Fitzhugh - 2021 - Acta Biotheoretica 69 (4):799-819.
    Three competing ‘methods’ have been endorsed for inferring phylogenetic hypotheses: parsimony, likelihood, and Bayesianism. The latter two have been claimed superior because they take into account rates of sequence substitution. Can rates of substitution be justified on its own accord in inferences of explanatory hypotheses? Answering this question requires addressing four issues: (1) the aim of scientific inquiry, (2) the nature of why-questions, (3) explanatory hypotheses as answers to why-questions, and (4) acknowledging that neither parsimony, likelihood, nor Bayesianism are inferential (...)
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  • Understanding Scientific Methodology in the Historical and Experimental Sciences via Language Analysis.Jeff Dodick, Shlomo Argamon & Paul Chase - 2009 - Science & Education 18 (8):985-1004.
  • Introduction: Scientific knowledge of the deep past.Adrian Currie & Derek Turner - 2016 - Studies in History and Philosophy of Science Part A 55:43-46.
  • Prediction and Explanation in Historical Natural Science.Carol E. Cleland - 2011 - British Journal for the Philosophy of Science 62 (3):551-582.
    In earlier work ( Cleland [2001] , [2002]), I sketched an account of the structure and justification of ‘prototypical’ historical natural science that distinguishes it from ‘classical’ experimental science. This article expands upon this work, focusing upon the close connection between explanation and justification in the historical natural sciences. I argue that confirmation and disconfirmation in these fields depends primarily upon the explanatory (versus predictive or retrodictive) success or failure of hypotheses vis-à-vis empirical evidence. The account of historical explanation that (...)
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  • Evidential reasoning in historical sciences: applying Toulmin schemes to the case of Archezoa.Thomas Bonnin - 2019 - Biology and Philosophy 34 (2):30.
    This article is a study of the role and use of evidence in the evaluation of claims in the historical sciences. In order to do this, I develop a “snapshot” approach to Toulmin schemas. This framework is applied to the case of Archezoa, an initially supported then eventually rejected hypothesis in evolutionary biology. From this case study, I criticize Cleland’s “smoking gun” account of the methodology of the historical sciences. I argue that Toulmin schemas are conceptually precise tools that allow (...)
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  • International Handbook of Research in History, Philosophy and Science Teaching.Michael R. Matthews (ed.) - 2014 - Springer.
    This inaugural handbook documents the distinctive research field that utilizes history and philosophy in investigation of theoretical, curricular and pedagogical issues in the teaching of science and mathematics. It is contributed to by 130 researchers from 30 countries; it provides a logically structured, fully referenced guide to the ways in which science and mathematics education is, informed by the history and philosophy of these disciplines, as well as by the philosophy of education more generally. The first handbook to cover the (...)
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  • Explanation in Biology: An Enquiry into the Diversity of Explanatory Patterns in the Life Sciences.P.-A. Braillard and C. Malaterre (ed.) - 2015 - Springer.
  • Aggregating Evidence in Climate Science: Consilience, Robustness and the Wisdom of Multiple Models.Martin A. Vezér - unknown
    The goal of this dissertation is to contribute to the epistemology of science by addressing a set of related questions arising from current discussions in the philosophy and science of climate change: (1) Given the imperfection of computer models, how do they provide information about large and complex target systems? (2) What is the relationship between consilient reasoning and robust evidential support in the production of scientific knowledge? (3) Does taking the mean of a set of model outputs provide epistemic (...)
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  • Teaching Controversies in Earth Science: The Role of History and Philosophy of Science.Glenn Dolphin & Jeff Dodick - 2014 - In Michael R. Matthews (ed.), International Handbook of Research in History, Philosophy and Science Teaching. Springer. pp. 553-599.
    The state of geoscience education, in terms of numbers of teachers, students taught, and perceived importance, has been lagging behind the other science disciplines for decades. Part of the reason for this is that geology is seen as a “derivative” science as compared to its “experimental” counterparts (for instance, physics and chemistry). However, with current global issues facing the populations of the world (climate change, scarcity of clean water, increasing fossil fuel usage), being geoscience literate is a must. We will (...)
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