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  1. Design patterns of biological cells.Steven S. Andrews, H. Steven Wiley & Herbert M. Sauro - 2024 - Bioessays 46 (3):2300188.
    Design patterns are generalized solutions to frequently recurring problems. They were initially developed by architects and computer scientists to create a higher level of abstraction for their designs. Here, we extend these concepts to cell biology to lend a new perspective on the evolved designs of cells' underlying reaction networks. We present a catalog of 21 design patterns divided into three categories: creational patterns describe processes that build the cell, structural patterns describe the layouts of reaction networks, and behavioral patterns (...)
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  • Epigenomics: Large scale analysis of chromatin modifications and transcription factors/genome interactions.Thierry Grange, Jean Imbert & Denis Thieffry - 2005 - Bioessays 27 (11):1203-1205.
  • The other cooperation problem: Generating benefit.Brett Calcott - 2008 - Biology and Philosophy 23 (2):179-203.
    Understanding how cooperation evolves is central to explaining some core features of our biological world. Many important evolutionary events, such as the arrival of multicellularity or the origins of eusociality, are cooperative ventures between formerly solitary individuals. Explanations of the evolution of cooperation have primarily involved showing how cooperation can be maintained in the face of free-riding individuals whose success gradually undermines cooperation. In this paper I argue that there is a second, distinct, and less well explored, problem of cooperation (...)
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