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  1. Asymmetries Between Direct and Indirect Scalar Implicatures in Second Language Acquisition.Shuo Feng & Jacee Cho - 2019 - Frontiers in Psychology 10.
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  • An Ontological Analysis of Drug Prescriptions.Jean-François Ethier, Adrien Barton & Ryeyan Taseen - 2018 - Applied ontology 13 (4):273-294.
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  • A New Functional Magnetic Resonance Imaging Localizer for Preoperative Language Mapping Using a Sentence Completion Task: Validity, Choice of Baseline Condition, and Test–Retest Reliability.Kirill Elin, Svetlana Malyutina, Oleg Bronov, Ekaterina Stupina, Aleksei Marinets, Anna Zhuravleva & Olga Dragoy - 2022 - Frontiers in Human Neuroscience 16.
    To avoid post-neurosurgical language deficits, intraoperative mapping of the language function in the brain can be complemented with preoperative mapping with functional magnetic resonance imaging. The validity of an fMRI “language localizer” paradigm crucially depends on the choice of an optimal language task and baseline condition. This study presents a new fMRI “language localizer” in Russian using overt sentence completion, a task that comprehensively engages the language function by involving both production and comprehension at the word and sentence level. The (...)
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  • Correlations Between Smartphone Addiction and Alexithymia, Attachment Style, and Subjective Well-Being: A Meta-Analysis.Yueming Ding, Haitao Huang, Yiming Zhang, Qianwen Peng, Jingfen Yu, Guangli Lu, Huifang Wu & Chaoran Chen - 2022 - Frontiers in Psychology 13.
    BackgroundSmartphone addiction has become a social problem that affects peoples’ quality of life and is frequently reported to be correlated with alexithymia, avoidant or anxious attachment styles, and subjective well-being. This study aimed to investigate the relationship between SA and alexithymia, attachment style, and subjective well-being.MethodsA meta-analysis was conducted following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines. The following electronic databases were searched: PubMed, Web of Science, Embase, PsycINFO, PsycArticles, China National Knowledge Infrastructure, WANFANG DATA, and Chongqing (...)
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  • Macphail’s Null Hypothesis of Vertebrate Intelligence: Insights From Avian Cognition.Amalia P. M. Bastos & Alex H. Taylor - 2020 - Frontiers in Psychology 11.
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  • The Prevalence and Psychosocial Factors of Problematic Smartphone Use Among Chinese College Students: A Three-Wave Longitudinal Study.Anqi Wang, Zhen Wang, Ya Zhu & Xuliang Shi - 2022 - Frontiers in Psychology 13.
    Problematic smartphone use in college students has been a major public health concern in modern society, which may also lead to adverse health outcomes. Using a three-wave longitudinal study design, the current study aimed to examine the prevalence and psychosocial factors of PSU in a large sample of Chinese college students. The data used in this study was obtained from an ongoing longitudinal study in Guangdong, China. In the current study, a total of 7,434 freshmen and sophomores who completed the (...)
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  • Psychometric Properties and Factor Structures of Chinese Smartphone Addiction Inventory: Test of Two Models.Hsin-Yi Wang, Leif Sigerson, Hongyan Jiang & Cecilia Cheng - 2018 - Frontiers in Psychology 9.
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  • Evaluating and Extending the Informed Consent Ontology for Representing Permissions From the Clinical Domain.Elizabeth E. Umberfield, Cooper Stansbury, Kathleen Ford, Yun Jiang, Sharon L. R. Kardia, Andrea K. Thomer & Marcelline R. Harris - 2022 - Applied ontology 17 (2):321-336.
    The purpose of this study was to evaluate, revise, and extend the Informed Consent Ontology for expressing clinical permissions, including reuse of residual clinical biospecimens and health data. This study followed a formative evaluation design and used a bottom-up modeling approach. Data were collected from the literature on US federal regulations and a study of clinical consent forms. Eleven federal regulations and fifteen permission-sentences from clinical consent forms were iteratively modeled to identify entities and their relationships, followed by community reflection (...)
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  • Taxonomy for Humans or Computers? Cognitive Pragmatics for Big Data.Beckett Sterner & Nico M. Franz - 2017 - Biological Theory 12 (2):99-111.
    Criticism of big data has focused on showing that more is not necessarily better, in the sense that data may lose their value when taken out of context and aggregated together. The next step is to incorporate an awareness of pitfalls for aggregation into the design of data infrastructure and institutions. A common strategy minimizes aggregation errors by increasing the precision of our conventions for identifying and classifying data. As a counterpoint, we argue that there are pragmatic trade-offs between precision (...)
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  • Potential use of clinical polygenic risk scores in psychiatry – ethical implications and communicating high polygenic risk.A. C. Palk, S. Dalvie, J. de Vries, A. R. Martin & D. J. Stein - 2019 - Philosophy, Ethics, and Humanities in Medicine 14 (1):1-12.
    Psychiatric disorders present distinct clinical challenges which are partly attributable to their multifactorial aetiology and the absence of laboratory tests that can be used to confirm diagnosis or predict risk. Psychiatric disorders are highly heritable, but also polygenic, with genetic risk conferred by interactions between thousands of variants of small effect that can be summarized in a polygenic risk score. We discuss four areas in which the use of polygenic risk scores in psychiatric research and clinical contexts could have ethical (...)
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  • BFO: Basic Formal Ontology.J. Neil Otte, John Beverley & Alan Ruttenberg - 2022 - Applied ontology 17 (1):17-43.
    Basic Formal Ontology is a top-level ontology consisting of thirty-six classes, designed to support information integration, retrieval, and analysis across all domains of scientific investigation, presently employed in over 350 ontology projects around the world. BFO is a genuine top-level ontology, containing no terms particular to material domains, such as physics, medicine, or psychology. In this paper, we demonstrate how a series of cases illustrating common types of change may be represented by universals, defined classes, and relations employing the BFO (...)
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  • An Ontological Approach to Representing the Product Life Cycle.J. Neil Otte, Dimitris Kiritsi, Munira Mohd Ali, Ruoyu Yang, Binbin Zhang, Ron Rudnicki, Rahul Rai & Barry Smith - 2019 - Applied ontology 14 (2):1-19.
    The ability to access and share data is key to optimizing and streamlining any industrial production process. Unfortunately, the manufacturing industry is stymied by a lack of interoperability among the systems by which data are produced and managed, and this is true both within and across organizations. In this paper, we describe our work to address this problem through the creation of a suite of modular ontologies representing the product life cycle and its successive phases, from design to end of (...)
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  • Cue-Reactivity Among Young Adults With Problematic Instagram Use in Response to Instagram-Themed Risky Behavior Cues: A Pilot fMRI Study.Nisha Syed Nasser, Hamed Sharifat, Aida Abdul Rashid, Suzana Ab Hamid, Ezamin Abdul Rahim, Jia Ling Loh, Siew Mooi Ching, Fan Kee Hoo, Siti Irma Fadillah Ismail, Rohit Tyagi, Mazlyfarina Mohammad & Subapriya Suppiah - 2020 - Frontiers in Psychology 11.
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  • Aging Neuro-Behavior Ontology.Fernando Martínez-Santiago, M. Rosario García-Viedma, John A. Williams, Luke T. Slater & Georgios V. Gkoutos - 2020 - Applied ontology 15 (2):219-239.
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  • Disrupted Module Efficiency of Structural and Functional Brain Connectomes in Clinically Isolated Syndrome and Multiple Sclerosis.Yaou Liu, Yunyun Duan, Huiqing Dong, Frederik Barkhof, Kuncheng Li & Ni Shu - 2018 - Frontiers in Human Neuroscience 12.
  • Optimizing Magnetoencephalographic Imaging Estimation of Language Lateralization for Simpler Language Tasks.Leighton B. N. Hinkley, Elke De Witte, Megan Cahill-Thompson, Danielle Mizuiri, Coleman Garrett, Susanne Honma, Anne Findlay, Maria Luisa Gorno-Tempini, Phiroz Tarapore, Heidi E. Kirsch, Peter Mariën, John F. Houde, Mitchel Berger & Srikantan S. Nagarajan - 2020 - Frontiers in Human Neuroscience 14.
  • A Comprehensive Update on CIDO: The Community-Based Coronavirus Infectious Disease Ontology.Yongqun He, Hong Yu, Anthony Huffman, Asiyah Yu Lin, Darren A. Natale, John Beverley, Ling Zheng, Yehoshua Perl, Zhigang Wang, Yingtong Liu, Edison Ong, Yang Wang, Philip Huang, Long Tran, Jinyang Du, Zalan Shah, Easheta Shah, Roshan Desai, Hsin-hui Huang, Yujia Tian, Eric Merrell, William D. Duncan, Sivaram Arabandi, Lynn M. Schriml, Jie Zheng, Anna Maria Masci, Liwei Wang, Hongfang Liu, Fatima Zohra Smaili, Robert Hoehndorf, Zoë May Pendlington, Paola Roncaglia, Xianwei Ye, Jiangan Xie, Yi-Wei Tang, Xiaolin Yang, Suyuan Peng, Luxia Zhang, Luonan Chen, Junguk Hur, Gilbert S. Omenn, Brian Athey & Barry Smith - 2022 - Journal of Biomedical Semantics 13 (1):25.
    The current COVID-19 pandemic and the previous SARS/MERS outbreaks of 2003 and 2012 have resulted in a series of major global public health crises. We argue that in the interest of developing effective and safe vaccines and drugs and to better understand coronaviruses and associated disease mechenisms it is necessary to integrate the large and exponentially growing body of heterogeneous coronavirus data. Ontologies play an important role in standard-based knowledge and data representation, integration, sharing, and analysis. Accordingly, we initiated the (...)
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  • Problematic Mobile Phone and Smartphone Use Scales: A Systematic Review.Bethany Harris, Timothy Regan, Jordan Schueler & Sherecce A. Fields - 2020 - Frontiers in Psychology 11.
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  • 基于基本形式化本体的本体构建.Robert Arp, Barry Smith & Andrew D. Spear - 2020 - Beijing: People's Medical Publishing House.
    In the era of “big data,” science is increasingly information driven, and the potential for computers to store, manage, and integrate massive amounts of data has given rise to such new disciplinary fields as biomedical informatics. Applied ontology offers a strategy for the organization of scientific information in computer-tractable form, drawing on concepts not only from computer and information science but also from linguistics, logic, and philosophy. This book provides an introduction to the field of applied ontology that is of (...)
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  • The ImmPort Antibody Ontology.William Duncan, Travis Allen, Jonathan Bona, Olivia Helfer, Barry Smith, Alan Ruttenberg & Alexander D. Diehl - 2016 - Proceedings of the International Conference on Biological Ontology 1747.
    Monoclonal antibodies are essential biomedical research and clinical reagents that are produced by companies and research laboratories. The NIAID ImmPort (Immunology Database and Analysis Portal) resource provides a long-term, sustainable data warehouse for immunological data generated by NIAID, DAIT and DMID funded investigators for data archiving and re-use. A variety of immunological data is generated using techniques that rely upon monoclonal antibody reagents, including flow cytometry, immunofluorescence, and ELISA. In order to facilitate querying, integration, and reuse of data, standardized terminology (...)
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  • The Ontology of Biological and Clinical Statistics (OBCS) for Standardized and Reproducible Statistical Analysis.Jie Zheng, Marcelline R. Harris, Anna Maria Masci, Lin Yu, Alfred Hero, Barry Smith & Yongqun He - 2016 - Journal of Biomedical Semantics 7 (53).
    Statistics play a critical role in biological and clinical research. However, most reports of scientific results in the published literature make it difficult for the reader to reproduce the statistical analyses performed in achieving those results because they provide inadequate documentation of the statistical tests and algorithms applied. The Ontology of Biological and Clinical Statistics (OBCS) is put forward here as a step towards solving this problem. Terms in OBCS, including ‘data collection’, ‘data transformation in statistics’, ‘data visualization’, ‘statistical data (...)
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  • Enriching the Functionally Graded Materials (FGM) Ontology for Digital Manufacturing.Munira Mohd Ali, Ruoyu Yang, Binbin Zhang, Francesco Furini, Rahul Rai, J. Neil Otte & Barry Smith - 2021 - International Journal of Production Research 59 (18):5540-5557.
    Functionally graded materials (FGMs) have been used in many different kinds of applications in recent years and have attracted significant research attention. However, we do not yet have a commonly accepted way of representing the various aspects of FGMs. Lack of standardised vocabulary creates obstacles to the extraction of useful information relating to pertinent aspects of different applications. A standard resource is needed for describing various elements of FGMs, including existing applications, manufacturing techniques, and material characteristics. This motivated the creation (...)
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  • The Infectious Disease Ontology in the Age of COVID-19.Shane Babcock, Lindsay G. Cowell, John Beverley & Barry Smith - 2021 - Journal of Biomedical Semantics 12 (13).
    The Infectious Disease Ontology (IDO) is a suite of interoperable ontology modules that aims to provide coverage of all aspects of the infectious disease domain, including biomedical research, clinical care, and public health. IDO Core is designed to be a disease and pathogen neutral ontology, covering just those types of entities and relations that are relevant to infectious diseases generally. IDO Core is then extended by a collection of ontology modules focusing on specific diseases and pathogens. In this paper we (...)
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  • Ontobull and BFOConvert: Web-Based Programs to Support Automatic Ontology Conversion.Ong Edison: Xiang, Zheng Jie, Barry Smith & He Yongqun - 2016 - Proceedings of the Joint International Conference on Biological Ontology and Biocreative 1747.
    When a widely reused ontology appears in a new version which is not compatible with older versions, the ontologies reusing it need to be updated accordingly. Ontobull has been developed to automatically update ontologies with new term IRI(s) and associated metadata to take account of such version changes. To use the Ontobull web interface a user is required to (i) upload one or more ontology OWL source files; (ii) input an ontology term IRI mapping; and (where needed) (iii) provide update (...)
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