Structure in Chemistry

The philosophical vision of the world and the consequent methodology behind the book are clarified. The perspective used is the systemic one, but since today this term has assumed a wide and diversified meaning in the literature, this introduction will clarify the specific meaning of our approach, starting from the meaning of the term "system". Our idea of system is based on three key assertions that may seem contradictory, but are necessary and complementary to its definition. In particular, we considered (...) the usual idea that the system is more and less than the sum of its juxtaposed parts, highlighting the role of emergencies and constraints. In our idea of a system, however, we must consider a third fundamental characteristic: its dynamism, the dual nature of the system as an entity and as a process, its role as a "dynamic entity". Afterwards, the holistic and reductionist approaches were analysed in detail, and both the specific merits and the fact that these two opposing worldviews, considered individually, cannot give a complete and balanced description of reality, were taken into account. For us, only the systemic approach provides a balanced description of both the parts and the whole and must, therefore, be preferred. Finally, the differences between our approach and the approaches mentioned above have been considered in detail in this introduction. (shrink)

The article summarizes the software tool on astrophysical analysis with multi-wavelength space telescope data. It recaps the evidence analysis conducted on the Kerr-Newman black hole (KNBH). It was written prior to the article Research on the Kerr-Newman Black Hole in M82 Confirms Black Hole and White Hole Juxtapose not soon after the experiment. The conducted analysis suggested Hawking radiation is caused by the movement of ergosurfaces of the BH and serves as the primal evidence for black hole and white hole (...) juxtapose. A later data exploration was conducted with the radiation trails in the multi-wavelength data. The evidences produced corroborates with Yale professor Priyamvada Natarajan's black hole seeds theory. It implies that the electromagnetic dynamic of fusion and fission temperature determines the pressure of surface tension on the macro particles, and the mass density of the BH is determined by the electromagnetic tension between the outer ergosurface and inner ergosurface. The ring singularity of the BH and the Penrose-Hawking singularity of the BH determine the spin and gravitational singularity of the BH. Inside the ergosurfaces, the BH singularities' backward inflow causes the vicinity's rate on feeding the BH. It makes the active galactic nuclei (AGN) a semi-closed system. The density pressure is released on threshold. During the mass exchange observed by energy momentum upon the AGN's open, the macroparticle composition of the BH changes with the galactic event. This causes the expansion rate of the galaxy and contraction rate of the BH. AGN types and their relative motions determine the expansion rate of the cosmic universe in a generalized quantitative thinking. The article concludes that BH spin is caused by the asymmetric motions of AGN in the BH system. A set of the nuclear resonance caused by BH and white hole (WH) oscillation is processed with the same set of data. (shrink)

In this paper, we try to understand how Bunge’s scientific hylorealism can fit with several crystal chemistry’s objects and their properties. It is found that many of them, lying at the very core of this discipline, bring support to ontologi-cal emergentism. Building units, such as vacancies, their chemical potential, the crystal quantum number and many aspects of the spectroscopic properties of 4f electrons in ionic crystals, are presented as striking examples of emergent (or submergent) objects or properties encountered in the (...) single crystalline state. Among all the types of building. (shrink)

Dans cet article, nous essayons de comprendre comment l’hyloréalisme scientifique de Bunge peut s’accommoder avec plusieurs objets de la chimie des cristaux et leurs propriétés. Nous montrons que plusieurs d’entre eux, constituant le cœur de la discipline, soutiennent l’émergentisme ontologique. Les unités de construction, comme les lacunes, leur potentiel chimique, le nombre quantique cristallographique et plusieurs aspects des propriétés spectroscopiques des électrons 4f dans les cristaux ioniques, sont présentés comme des exemples remarquables d’objets ou de propriétés émergents (ou submergents) rencontrés (...) dans l’état cristallin. Parmi tous les types d’unités de construction, nous montrons que les lacunes s’avèrent ontologiquement réelles et matérielles. (shrink)

This book examines the way in which Robert Boyle seeks to accommodate his complex chemical philosophy within the framework of a mechanistic theory of matter. More specifically, the book proposes that Boyle regards chemical qualities as properties that emerged from the mechanistic structure of chymical atoms. Within Boyle’s chemical ontology, chymical atoms are structured concretions of particles that Boyle regards as chemically elementary entities, that is, as chemical wholes that resist experimental analysis. Although this interpretation of Boyle’s chemical philosophy has (...) already been suggested by other Boyle scholars, the present book provides a sustained philosophical argument to demonstrate that, for Boyle, chemical properties are dispositional, relational, emergent, and supervenient properties. This argument is strengthened by a detailed mereological analysis of Boylean chymical atoms that establishes the kind of theory of wholes and parts that is most consistent with an emergentist conception of chemical properties. The emergentist position that is being attributed to Boyle supports his view that chemical reactions resist direct explanation in terms of the mechanistic properties of fundamental particles, as well as his position regarding the scientific autonomy of chymistry from mechanics and physics. (shrink)

This paper investigates the case of enzyme classification to evaluate different ideals for regulating values in science. I show that epistemic and non-epistemic considerations are inevitably and untraceably entangled in enzyme classification, and argue that this has significant implications for the two main kinds of views on values in science, namely, Epistemic Priority Views and Joint Satisfaction Views. More precisely, I argue that the case of enzyme classification poses a problem for the usability and descriptive accuracy of these two views. (...) The paper ends by suggesting that these two views provide different but complementary perspectives, and that both are useful for evaluating values in science. (shrink)

In 1869, Johann Friedrich Miescher discovered a new substance in the nucleus of living cells. The substance, which he called nuclein, is now known as DNA, yet both Miescher’s name and his theoretical ideas about nuclein are all but forgotten. This paper traces the trajectory of Miescher’s reception in the historiography of genetics. To his critics, Miescher was a “contaminator,” whose preparations were impure. Modern historians portrayed him as a “confuser,” whose misunderstandings delayed the development of molecular biology. Each of (...) these portrayals reflects the disciplinary context in which Miescher’s work was evaluated. Using archival sources to unearth Miescher’s unpublished speculations—including an analogy between the hereditary material and language, and a speculation that a series of asymmetric carbon atoms could account for hereditary variation—this paper clarifies the ways in which the past was judged through the lens of contemporary concerns. It also shows how organization, structure, function, and information were already being considered when nuclein was first discovered nearly 150 years ago. (shrink)

Following Kripke and Putnam, the received view of chemical kinds has been a microstructuralist one. To be a microstructuralist about chemical kinds is to think that membership in said kinds is conferred by microstructural properties. Recently, the received microstructuralist view has been elaborated and defended, but it has also been attacked on the basis of complexities, both chemical and ontological. Here, I look at which complexities really challenge the microstructuralist view; at how the view itself might be made more complicated (...) in order to accommodate such challenges; and finally, at what this increasingly complicated picture implies for our standard assessment of chemical kindhood—primarily, for the widespread assumption that chemical kinds in general are more neat and tidy than those messy biological ones. _1_ The Received View _2_ A Taxonomy of Chemical Kinds _3_ Atomic Number _4_ H2O, H3O+, OH−, and More _5_ Complicating the Microstructuralist Picture _6_ Concrete and Other Mixtures _7_ Macromolecules, Especially Proteins _8_ Abandoning Sameness of Elemental Composition _9_ Not So Different after All. (shrink)

Recent work on Natural Kind Essentialism has taken a deflationary turn. The assumptions about the grounds of essentialist truths concerning natural kinds familiar from the Kripke-Putnam framework are now considered questionable. The source of the problem, however, has not been sufficiently explicated. The paper focuses on the Twin Earth scenario, and it will be demonstrated that the essentialist principle at its core (which I call IDENT)—that necessarily, a sample of a chemical substance, A, is of the same kind as another (...) sample, B, if and only if A and B have the same microstructure—must be re-evaluated. The Twin Earth scenario also assumes the falsity of another essentialist principle (which I call INST): necessarily, there is a 1:1 correlation between (all of ) the chemical properties of a chemical substance and the microstructure of that substance. This assumption will be questioned, and it will be argued that, in fact, the best strategy for defending IDENT is to establish INST. The prospects for Natural Kind Essentialism and microstructural essentialism regarding chemical substances will be assessed with reference to recent work in the philosophy of chemistry. Finally, a weakened form of INST will be presented. (shrink)

Contingentism, generally contrasted with law necessitarianism, is the view that the laws of nature are contingent. It is often coupled with the claim that their contingency is knowable a priori. This paper considers Bird's (2001, 2002, 2005, 2007) arguments for the thesis that, necessarily, salt dissolves in water; and it defends his view against Beebee's (2001) and Psillos's (2002) contingentist objections. A new contingentist objection is offered and several reasons for scepticism about its success are raised. It is concluded that (...) certain higher-level laws describing the behaviours of molecular compounds may be necessary due to their dependence on underlying physical laws, and that the modal status of laws of nature cannot be determined a priori, as the structural features of the substances and properties they govern must first be investigated. (shrink)

The concept of molecular structure is fundamental to the practice and understanding of chemistry, but the meaning of this term has evolved and is still evolving. The Born–Oppenheimer separation of electronic and nuclear motions lies at the heart of most modern quantum chemical models of molecular structure. While this separation introduces a great computational and practical simplification, it is neither essential to the conceptual formulation of molecular structure nor universally valid. Going beyond the Born–Oppenheimer approximation introduces new paradigms, bringing fresh (...) insight into the chemistry of fluxional molecules, proteins, superconductors and macroscopic dielectrics, thus opening up new avenues for exploration. But it requires that our ideas of molecular structure need to evolve beyond simple ball-and-stick-type models. (shrink)

The "usual story" regarding molecular chemistry is that it is roughly an application of quantum mechanics. That is to say, quantum mechanics supplies everything necessary and sufficient, both ontologically and epistemologically, to reduce molecular chemistry to quantum mechanics. This is a reductive story, to be sure, but a key explanatory element of molecular chemistry, namely molecular structure, is absent from the quantum realm. On the other hand, typical characterizations of emergence, such as the unpredictability or inexplicability of molecular structure based (...) on quantum mechanics, do not characterize the relationship between molecular chemistry and quantum mechanics well either. A different scheme for characterizing reduction and emergence is proposed that accommodates the relationship between quantum mechanics and molecular chemistry and some initial objections to the scheme are considered. (shrink)

الكيمياء علمٌ تجريبي بطبيعته، يشتغل معمليًا بالجواهر تحليلاً وتركيبًا، ويُقيم بناءاته النسقية استرشادًا بقواعد محددة تحكم إجراءات البحث التجريبي ونتائجه. وكشأن أي نشاط علمي آخر، تستلزم الممارسة الكيميائية لغة جزئية خاصة تصف بناءاتها التجريبية وتُنمّط أشكالها. وما دام التحليل والتركيب – كإجراءين تجريبيين – هما عمادا البحث الكيميائي وجوهره، فمن الضروري أن تحوي لغة الكيمياء تمثيلات صورية توصف بدورها بأنها صيغٌ أو عبارات تحليلية وتركيبية. يمكننا إذن الزعم بأن ثمة علاقة اعتماد متبادلة بين لغة الكيمياء وممارساتها المعملية؛ فاللغة تؤثر مباشرة (...) – وبأكثر من طريقة – على مجرى البحث الكيميائي وتطوره, ومن خلالها يمكن تحديد مدى قوته أو ضعفه ... تقدمه أو تخلفه ... شرعية تنبؤاته أو افتقادها لسمة الشرعية المنطقية؛ كما أن سُبل البحث المعملي للكيمياء تنعكس بالضرورة على قواعد الصياغة الصورية لهذه اللغة ومدى إمكانية تطويرها وتنقيتها من شوائب اللغة العادية التي اشتُقت منها. ويعني ذلك – بعبارة أخرى – أن اللغة والتجريب شقان مُكملان لبعضهما البعض؛ وجهان لعملة واحدة تحمل اسم الممارسة العلمية. فهل تختلف اللغة الكيميائية عن غيرها من لغات العلم الخاصة؟ وكيف يستخدم الكيميائيون لغتهم؟ ما هي القواعد الحاكمة لهذه اللغة؟, وما هي نتائج استخدامها بالنسبة للكيمياء ككل؟. (shrink)

This essay analyzes the historical and philosophical context that led to the basic concepts of stereochemistry proposed by Van’t Hoff and Le Bel. Although it is now well established that the key idea of tetrahedral carbon, and in general a geometric view of matter, was pioneered by other chemists, Van’t Hoff and Le Bel used this idea to solve the puzzle of optical activity, thereby establishing a direct linkage between structure and physical properties. It is also interesting to note that (...) their proposals came without experimental verification and they were largely based on experiments conducted by others. Philosophical arguments can, however, be invoked to satisfactorily validate this deductive reasoning. (shrink)

En este trabajo se define formamente el concepto de representacion en química utilizando homomorfismos desde estructuras algebraicas, que llamamos sistemas de tipo C, en otras estructuras especiales de símbolos muy relacionados con los que son habituales en la qímica experimental. Para la definicion de los sistemas de tipo C se ha seleccionado un conjunto minimo de relaciones y funciones, que son necesarias para expresar proposiciones significativas en química. Tambien se define un lenguaje formal de primer orden adecuado a los sistemas (...) de tipo C, que llamamos L. EI resultado principal que se demuestra es que toda representación que verifica las mismas sentencias de L que un sistema de tipo C, es necesariamente isomorfo a él. Se concluye por lo tanto que puede existir un problema linguístico subyacente en la aplicacion que de la mecaníca cuántica se hace en la química teórica.The concept of representation in chemistry bas been formallv defined by means of homomorphisms from algebraical structures, which we call type-C systems, to some special sets of symbols which can be related to the symbols ordinarily used in experimental chemistry. A minimum number of relations and functions, which would suffice to express significant propositions in chemistry, have been chosen to define type-C systems. A first order formal language L adequate to type-C systems has been defined. It has been shown that each representation that verifies the same sentences of L as a type-C system is necessarily isomorphic to it. It is concluded that a systematic study of the representation problem in chemistry is in order because a deep language problem underlies the application of quantum mechanies to chemical problems. (shrink)

An exposition of Pierre Duhem’s formulation of the structure of chemical substances as expressed by their formulas is given, presenting it as a development of his essentially Aristotelian view of mixtures. Duhem’s masterly development of the subject displays an eye for logical clarity familiar from his work in thermodynamics but applied here to the extraction of what he regarded as true from the history of chemistry. Though no longer defensible, the account has a conceptual interest in its own right and (...) illuminates a less frequently discussed side of Duhem’s views. (shrink)

Quantum systems have a holistic structure, which implies that they cannot be divided into parts. In order tocreate (sub)objects like individual substances, molecules, nuclei, etc., in a universal whole, the Einstein-Podolsky-Rosen correlations between all the subentities, e.g. all the molecules in a substance, must be suppressed by perceptual and mental processes.Here the particular problems ofGestalt (shape)perception are compared with the attempts toattribute a shape to a quantum mechanical system like a molecule. Gestalt perception and quantum mechanics turn out (on an (...) informal level) to show similar features and problems: holistic aspects, creation of objects, dressing procedures, influence of the observer, classical quantities and structures. The attribute classical of a property or structure means thatholistic correlations to any other quantity do not exist or that these correlations are considered as irrelevant and therefore eliminated (either deliberately and by declaration or in a mental process that is not under rational control). An example of animposed classical structure is the nuclear frame of a molecule. Candidates for classical properties that arenot imposed by the observer could be the charge of a particle or the handedness of a molecule. It is argued here that at least part of a molecule's shape can begenerated automatically by the environment. A molecular shape of this sort arises in addition to Lamb shift-type energy corrections. (shrink)

THE CONCEPTS OF ASYMMETRY and optical activity, although introduced fairly late into inorganic chemistry, have played venerable and central roles in organic chemistry. Modern organic chemistry is usually considered to commence with Friedrich Wohler's synthesis of urea in 1828, and Jean Baptiste Biot's discovery of optical activity in 1812 antedates the very genesis of this field. Moreover, Joseph Achille Le Bel and Jacobus Henricusvan't Hoff's concept of the tetrahedral carbon atom, which constitutes the foundation of stereochemistry, was proposed a century (...) ago (1874), primarily in order to explain the optical isomerism investigated by Louis Pasteur and others. It is to Alfred Werner, the founder of coordination chemistry, however, that we owe the introduction of the concept of optical activity into coordination chemistry, together with its experimental proof. ' The purpose of this paper is to examine and speculate upon the circumstances of Werner's discovery of optically active coordination compounds, to trace its antecedents in earlier work, and to assess its impact upon the future course of inorganic stereochemistry. (shrink)